==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 15-MAY-02 1J5N . COMPND 2 MOLECULE: NONHISTONE CHROMOSOMAL PROTEIN 6A; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.E.MASSE,B.WONG,Y.-M.YEN,F.H.-T.ALLAIN,R.C.JOHNSON,J.FEIGON . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8150.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 72.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 219 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 32.4 -10.5 -3.0 -20.9 2 2 A V + 0 0 139 1,-0.2 0, 0.0 2,-0.0 0, 0.0 0.694 360.0 55.5 -72.4 -18.8 -10.8 0.1 -18.6 3 3 A T S S- 0 0 85 2,-0.0 -1,-0.2 0, 0.0 0, 0.0 -0.801 87.1-143.7-119.4 89.1 -7.4 -0.7 -17.1 4 4 A P - 0 0 103 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.210 2.0-151.0 -51.9 132.3 -4.8 -0.9 -19.9 5 5 A R + 0 0 210 2,-0.0 3,-0.0 -4,-0.0 -2,-0.0 0.063 62.1 111.7 -94.3 24.2 -2.2 -3.6 -19.3 6 6 A E S S- 0 0 157 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.775 79.3 -92.6-101.3 144.2 0.5 -1.7 -21.2 7 7 A P + 0 0 117 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.160 42.8 170.2 -52.2 141.3 3.5 -0.0 -19.7 8 8 A K - 0 0 161 -3,-0.0 -2,-0.0 2,-0.0 -3,-0.0 -0.200 59.0 -86.7-151.3 49.3 3.1 3.6 -18.7 9 9 A K + 0 0 189 1,-0.2 2,-0.4 4,-0.0 0, 0.0 0.906 63.3 175.2 40.7 92.4 6.1 4.7 -16.6 10 10 A R + 0 0 164 3,-0.1 -1,-0.2 2,-0.0 2,-0.1 -0.991 18.1 111.8-131.1 136.1 5.2 3.6 -13.1 11 11 A T S S- 0 0 87 -2,-0.4 3,-0.1 3,-0.0 0, 0.0 -0.421 86.4 -18.3 161.1 120.1 7.2 3.8 -9.9 12 12 A T S S- 0 0 143 -2,-0.1 -2,-0.0 1,-0.1 0, 0.0 0.852 85.0-143.6 36.3 48.4 7.1 5.8 -6.7 13 13 A R - 0 0 178 1,-0.0 -1,-0.1 0, 0.0 -3,-0.1 0.103 18.6 -98.7 -36.1 151.3 4.9 8.3 -8.6 14 14 A K - 0 0 193 1,-0.1 2,-0.1 -3,-0.1 -3,-0.0 0.247 49.5 -78.0 -61.1-166.2 5.5 11.9 -7.7 15 15 A K + 0 0 119 2,-0.0 -1,-0.1 0, 0.0 5,-0.0 -0.384 44.5 163.8 -94.0 174.5 3.3 13.9 -5.3 16 16 A K + 0 0 165 1,-0.2 3,-0.1 -2,-0.1 4,-0.1 -0.113 43.9 59.0 168.1 82.6 -0.1 15.4 -5.8 17 17 A D S S- 0 0 64 1,-0.1 -1,-0.2 3,-0.1 71,-0.0 -0.670 74.9-105.3 157.3 150.3 -2.3 16.5 -2.9 18 18 A P S S- 0 0 76 0, 0.0 -1,-0.1 0, 0.0 71,-0.1 0.972 120.6 -0.9 -57.8 -57.0 -2.4 18.8 0.2 19 19 A N S S- 0 0 56 69,-0.2 -2,-0.1 -3,-0.1 69,-0.1 0.710 90.4-154.7-104.3 -28.9 -1.9 15.9 2.7 20 20 A A - 0 0 10 68,-0.1 -3,-0.1 65,-0.1 65,-0.1 0.976 8.1-165.7 50.5 79.0 -1.8 13.1 0.1 21 21 A P - 0 0 12 0, 0.0 64,-0.1 0, 0.0 63,-0.1 0.949 23.6-140.2 -55.6 -52.1 -2.9 10.1 2.1 22 22 A K - 0 0 147 62,-0.1 59,-0.1 2,-0.0 63,-0.0 0.907 28.3-102.0 88.6 54.5 -1.7 7.7 -0.6 23 23 A R - 0 0 171 58,-0.1 2,-0.3 59,-0.0 61,-0.1 0.174 57.2 -71.8 29.8-151.8 -4.4 5.0 -0.8 24 24 A A - 0 0 13 1,-0.3 54,-0.1 57,-0.1 50,-0.1 -0.844 45.9 -87.6-128.5 169.7 -3.5 1.8 1.0 25 25 A L - 0 0 90 -2,-0.3 2,-0.3 52,-0.1 -1,-0.3 0.222 47.6-113.8 -58.1-169.6 -1.2 -1.2 0.5 26 26 A S >> - 0 0 69 1,-0.0 4,-1.9 51,-0.0 3,-1.5 -0.908 20.0-108.6-131.8 161.7 -2.2 -4.2 -1.5 27 27 A A H 3> S+ 0 0 14 -2,-0.3 4,-1.7 1,-0.3 5,-0.2 0.711 121.8 60.0 -59.2 -17.8 -3.0 -7.9 -0.8 28 28 A Y H 3> S+ 0 0 79 3,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.755 103.4 48.6 -81.8 -26.6 0.3 -8.4 -2.7 29 29 A M H <> S+ 0 0 74 -3,-1.5 4,-1.5 3,-0.2 -2,-0.2 0.915 115.7 41.6 -78.8 -45.2 2.3 -6.4 -0.2 30 30 A F H X S+ 0 0 12 -4,-1.9 4,-1.6 2,-0.2 -2,-0.2 0.957 122.8 40.5 -67.1 -47.0 0.9 -8.2 2.9 31 31 A F H X S+ 0 0 7 -4,-1.7 4,-2.6 -5,-0.2 3,-0.5 0.967 115.4 50.4 -64.3 -51.2 1.1 -11.6 1.2 32 32 A A H X S+ 0 0 17 -4,-1.7 4,-2.0 1,-0.2 5,-0.3 0.813 104.2 62.9 -56.2 -28.0 4.4 -10.7 -0.3 33 33 A N H X S+ 0 0 83 -4,-1.5 4,-1.0 1,-0.2 -1,-0.2 0.950 107.8 39.5 -61.7 -48.7 5.4 -9.7 3.2 34 34 A E H X S+ 0 0 116 -4,-1.6 4,-1.9 -3,-0.5 -2,-0.2 0.901 123.0 43.2 -66.6 -42.2 4.9 -13.3 4.4 35 35 A N H X S+ 0 0 12 -4,-2.6 4,-0.8 2,-0.2 6,-0.4 0.999 98.2 67.5 -66.9 -73.7 6.4 -14.7 1.3 36 36 A R H X S+ 0 0 139 -4,-2.0 4,-1.7 1,-0.3 5,-0.2 0.665 114.8 33.3 -10.1 -63.8 9.5 -12.5 0.7 37 37 A D H X S+ 0 0 62 -4,-1.0 4,-1.6 -5,-0.3 -1,-0.3 0.961 127.5 40.7 -67.8 -51.2 10.9 -14.0 3.9 38 38 A I H >X S+ 0 0 76 -4,-1.9 4,-1.5 -3,-0.2 3,-0.5 0.994 118.1 44.8 -57.8 -69.9 9.4 -17.4 3.4 39 39 A V H >X S+ 0 0 16 -4,-0.8 4,-1.4 1,-0.3 3,-1.4 0.907 121.2 38.7 -39.2 -64.1 10.0 -17.7 -0.3 40 40 A R H 3< S+ 0 0 166 -4,-1.7 -1,-0.3 -5,-0.4 -2,-0.2 0.769 109.8 63.9 -63.3 -24.5 13.5 -16.4 -0.2 41 41 A S H << S+ 0 0 87 -4,-1.6 -1,-0.3 -3,-0.5 -2,-0.2 0.754 110.8 37.1 -70.6 -23.3 14.0 -18.4 3.0 42 42 A E H << S+ 0 0 146 -4,-1.5 -2,-0.2 -3,-1.4 -1,-0.2 0.600 129.1 34.4-100.6 -17.1 13.4 -21.6 1.0 43 43 A N >< + 0 0 59 -4,-1.4 3,-1.0 -5,-0.3 -2,-0.2 -0.385 62.8 154.5-135.2 56.7 15.3 -20.4 -2.0 44 44 A P T 3 S+ 0 0 88 0, 0.0 -3,-0.1 0, 0.0 -1,-0.1 0.617 77.6 58.7 -59.1 -12.1 18.1 -18.2 -0.7 45 45 A D T 3 S+ 0 0 161 -3,-0.1 2,-0.2 2,-0.1 -2,-0.1 0.810 89.4 81.4 -87.3 -34.8 19.9 -19.1 -3.9 46 46 A I S < S- 0 0 45 -3,-1.0 -3,-0.1 -6,-0.1 2,-0.0 -0.505 72.2-144.3 -76.0 139.6 17.3 -17.7 -6.3 47 47 A T >> - 0 0 103 -2,-0.2 4,-2.5 4,-0.0 3,-2.0 -0.075 41.5 -72.0 -90.1-167.5 17.3 -13.9 -6.9 48 48 A F H 3>>S+ 0 0 169 1,-0.3 4,-1.7 2,-0.2 5,-0.8 0.811 127.9 66.3 -56.5 -33.9 14.5 -11.4 -7.5 49 49 A G H 345S+ 0 0 25 3,-0.2 -1,-0.3 2,-0.1 -3,-0.0 0.416 115.2 28.4 -73.2 6.3 13.9 -12.9 -10.9 50 50 A Q H <>5S+ 0 0 79 -3,-2.0 4,-2.0 3,-0.1 5,-0.3 0.606 123.2 43.5-127.0 -53.4 12.8 -16.1 -9.2 51 51 A V H X5S+ 0 0 16 -4,-2.5 4,-1.0 3,-0.2 -3,-0.2 0.893 120.5 44.4 -61.9 -43.0 11.4 -15.2 -5.8 52 52 A G H >X5S+ 0 0 9 -4,-1.7 4,-1.8 -5,-0.4 3,-0.5 0.997 119.1 36.3 -67.1 -67.9 9.5 -12.2 -7.3 53 53 A K H 3>X S+ 0 0 21 -4,-1.7 4,-0.7 -5,-0.2 3,-0.6 0.980 111.3 29.1 -57.4 -60.7 0.3 -15.9 -5.0 60 60 A K H 3< S+ 0 0 164 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.682 112.1 72.1 -73.1 -17.9 -2.8 -16.5 -7.1 61 61 A A H 3< S+ 0 0 69 -4,-1.4 -1,-0.2 -5,-0.3 -2,-0.2 0.862 89.4 60.9 -65.1 -37.0 -1.9 -20.2 -7.1 62 62 A L H << S- 0 0 62 -4,-1.7 -2,-0.2 -3,-0.6 -1,-0.2 0.981 106.1-117.3 -52.8 -71.5 -2.9 -20.5 -3.4 63 63 A T >X - 0 0 63 -4,-0.7 4,-1.6 1,-0.1 3,-0.6 -0.405 25.0 -79.7 136.1 147.2 -6.6 -19.5 -3.7 64 64 A P H >> S+ 0 0 81 0, 0.0 4,-1.4 0, 0.0 3,-0.6 0.855 129.9 53.1 -38.1 -48.2 -8.9 -16.8 -2.5 65 65 A E H >4 S+ 0 0 130 1,-0.3 3,-0.9 2,-0.2 -2,-0.1 0.939 105.7 52.0 -56.2 -49.5 -9.1 -18.6 0.9 66 66 A E H <4 S+ 0 0 87 -3,-0.6 4,-0.4 1,-0.3 -1,-0.3 0.775 109.2 52.9 -58.0 -26.2 -5.3 -18.6 1.2 67 67 A K H XX>S+ 0 0 47 -4,-1.6 4,-1.7 -3,-0.6 5,-0.7 0.760 80.6 93.2 -79.7 -27.7 -5.5 -14.9 0.5 68 68 A Q H 5S+ 0 0 74 0, 0.0 4,-1.2 0, 0.0 -1,-0.3 0.949 126.8 18.5 -53.2 -56.8 -5.1 -13.6 5.6 70 70 A Y H <>5S+ 0 0 33 -3,-0.6 4,-1.7 -4,-0.4 6,-0.2 0.968 124.6 52.7 -82.0 -62.0 -3.5 -10.9 3.4 71 71 A E H >X5S+ 0 0 68 -4,-1.7 4,-1.6 1,-0.3 3,-1.0 0.902 116.2 44.0 -39.6 -50.0 -6.3 -9.9 1.1 72 72 A A H 3XX S+ 0 0 133 -4,-2.1 3,-0.9 1,-0.3 4,-0.6 0.895 112.5 30.3 -37.4 -59.0 -5.7 2.3 7.9 81 81 A Y H >X S+ 0 0 41 -4,-2.0 4,-1.8 1,-0.2 3,-0.7 0.855 104.4 77.8 -71.3 -35.0 -5.1 4.9 5.2 82 82 A E H 3X S+ 0 0 73 -4,-1.9 4,-2.4 -5,-0.3 -1,-0.2 0.766 93.3 55.5 -45.6 -25.0 -8.8 5.6 5.0 83 83 A S H S+ 0 0 80 -4,-1.9 4,-1.1 2,-0.2 5,-0.7 0.900 100.8 73.7 -82.7 -40.8 -8.7 13.8 7.4 88 88 A Y H X5S+ 0 0 44 -4,-1.4 4,-1.5 1,-0.3 3,-0.2 0.843 114.8 27.3 -36.4 -41.9 -6.9 14.5 4.2 89 89 A N H X5S+ 0 0 81 -4,-1.8 4,-1.3 3,-0.2 -1,-0.3 0.772 116.2 61.7 -92.4 -31.0 -10.2 16.3 3.4 90 90 A A H <5S+ 0 0 70 -4,-1.3 -2,-0.2 -5,-0.3 -1,-0.2 0.295 123.1 22.7 -78.2 11.4 -11.0 17.1 7.0 91 91 A T H <5S+ 0 0 82 -4,-1.1 -2,-0.2 -3,-0.2 -3,-0.2 0.470 123.6 48.7-141.8 -41.6 -7.9 19.1 7.1 92 92 A L H << 0 0 63 -4,-1.5 -3,-0.2 -5,-0.7 -2,-0.1 0.824 360.0 360.0 -74.8 -32.7 -7.0 20.1 3.6 93 93 A A < 0 0 125 -4,-1.3 -1,-0.3 -6,-0.3 -2,-0.1 -0.794 360.0 360.0-139.5 360.0 -10.5 21.3 2.9