==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-OCT-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 10-OCT-06 2J7J . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR IIIA; . SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; . AUTHOR D.LU,A.KLUG . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7057.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 55.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 27 31.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 148 0, 0.0 2,-0.6 0, 0.0 13,-0.2 0.000 360.0 360.0 360.0 144.8 5.1 25.7 -3.4 2 2 A Y E -A 13 0A 110 11,-3.0 11,-2.0 13,-0.1 2,-0.4 -0.842 360.0-152.1 -93.3 121.5 5.9 28.2 -0.5 3 3 A V E -A 12 0A 88 -2,-0.6 2,-0.4 9,-0.2 9,-0.2 -0.786 12.2-123.3-108.0 134.1 7.4 31.4 -2.0 4 4 A C - 0 0 3 7,-2.6 6,-0.7 -2,-0.4 5,-0.2 -0.615 16.3-164.2 -78.3 124.1 9.8 33.8 -0.2 5 5 A H + 0 0 110 -2,-0.4 -1,-0.1 4,-0.1 3,-0.1 0.470 49.6 117.4 -87.8 -6.5 8.4 37.3 -0.1 6 6 A F S > S- 0 0 26 1,-0.1 3,-1.0 2,-0.1 4,-0.4 -0.279 78.7 -82.8 -65.9 150.9 11.7 39.0 0.7 7 7 A E T 3 S+ 0 0 185 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 -0.221 108.3 5.7 -60.0 140.2 13.1 41.5 -1.8 8 8 A N T 3 S+ 0 0 165 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.1 0.820 117.8 80.2 57.4 36.7 15.1 40.2 -4.7 9 9 A C < + 0 0 42 -3,-1.0 -1,-0.1 -5,-0.2 -2,-0.1 0.276 36.1 162.8-130.3-102.2 14.3 36.6 -3.8 10 10 A G + 0 0 40 -6,-0.7 -5,-0.1 -4,-0.4 -3,-0.1 0.612 27.0 166.9 80.0 12.6 11.2 34.6 -4.6 11 11 A K - 0 0 125 -8,-0.1 -7,-2.6 1,-0.1 2,-0.3 -0.321 24.5-143.8 -55.8 142.5 12.9 31.3 -3.9 12 12 A A E -A 3 0A 46 -9,-0.2 2,-0.4 -11,-0.0 -9,-0.2 -0.897 14.9-166.8-120.0 146.7 10.2 28.5 -3.6 13 13 A F E -A 2 0A 44 -11,-2.0 -11,-3.0 -2,-0.3 6,-0.1 -0.992 25.6-135.4-136.8 138.6 10.1 25.4 -1.4 14 14 A K S S+ 0 0 156 -2,-0.4 2,-0.3 -13,-0.2 -1,-0.1 0.881 92.2 46.4 -56.8 -42.1 8.0 22.3 -1.4 15 15 A K S > S- 0 0 134 1,-0.1 4,-1.3 -13,-0.1 3,-0.4 -0.812 77.6-131.5-111.6 146.3 7.4 22.4 2.4 16 16 A H H > S+ 0 0 91 -2,-0.3 4,-2.0 1,-0.2 5,-0.1 0.832 107.7 54.5 -60.4 -37.9 6.5 25.3 4.7 17 17 A N H > S+ 0 0 113 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.823 102.6 57.1 -69.7 -31.4 9.3 24.5 7.2 18 18 A Q H > S+ 0 0 90 -3,-0.4 4,-1.9 2,-0.2 -1,-0.2 0.852 107.7 48.2 -64.9 -37.9 11.9 24.7 4.4 19 19 A L H X S+ 0 0 13 -4,-1.3 4,-2.6 2,-0.2 -2,-0.2 0.930 109.8 52.6 -65.4 -46.1 10.8 28.2 3.6 20 20 A K H X S+ 0 0 98 -4,-2.0 4,-0.8 1,-0.2 -2,-0.2 0.912 111.0 46.2 -58.5 -43.4 10.9 29.2 7.2 21 21 A V H >< S+ 0 0 83 -4,-2.3 3,-0.8 1,-0.2 4,-0.5 0.912 112.3 51.1 -65.8 -41.5 14.5 27.9 7.6 22 22 A H H >< S+ 0 0 28 -4,-1.9 3,-1.8 1,-0.2 4,-0.4 0.915 103.7 59.6 -58.4 -41.7 15.5 29.7 4.4 23 23 A Q H >X S+ 0 0 17 -4,-2.6 4,-2.4 1,-0.3 3,-0.9 0.686 86.1 74.7 -68.9 -18.1 14.0 32.9 5.6 24 24 A F H S+ 0 0 32 -3,-0.9 3,-1.1 -4,-0.4 4,-0.6 0.909 115.4 50.0 -80.2 -50.5 17.0 37.2 5.6 27 27 A T H 3< S+ 0 0 31 -4,-2.4 3,-0.3 1,-0.3 -2,-0.2 0.755 100.8 63.7 -68.8 -25.8 15.8 37.9 9.1 28 28 A Q T 3< S+ 0 0 151 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.1 0.822 108.5 43.2 -60.5 -35.1 19.3 37.5 10.6 29 29 A Q T <4 S+ 0 0 137 -3,-1.1 -1,-0.2 -4,-0.3 -2,-0.2 0.551 118.5 45.5 -86.5 -13.8 20.2 40.6 8.5 30 30 A L < + 0 0 49 -4,-0.6 -1,-0.2 -3,-0.3 14,-0.2 -0.606 65.8 161.0-128.6 69.1 17.0 42.4 9.5 31 31 A P + 0 0 75 0, 0.0 2,-0.9 0, 0.0 13,-0.2 0.620 51.3 85.5 -69.8 -15.6 16.7 41.9 13.2 32 32 A Y E -B 43 0B 91 11,-2.5 11,-2.3 13,-0.0 2,-0.3 -0.793 63.1-171.1 -97.8 102.7 14.3 44.8 13.8 33 33 A E E -B 42 0B 111 -2,-0.9 9,-0.2 9,-0.2 7,-0.1 -0.725 28.7-110.7 -97.3 138.4 10.7 43.7 13.2 34 34 A C - 0 0 2 7,-2.4 5,-0.1 -2,-0.3 -1,-0.1 -0.459 22.5-145.8 -62.1 131.4 7.6 45.9 13.1 35 35 A P + 0 0 83 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.566 64.8 108.8 -78.9 -9.2 5.5 45.1 16.2 36 36 A H S > S- 0 0 77 1,-0.1 3,-1.6 2,-0.1 2,-0.1 -0.505 79.1-110.0 -71.9 133.3 2.1 45.7 14.4 37 37 A E T 3 S+ 0 0 192 1,-0.2 -1,-0.1 -2,-0.2 3,-0.1 -0.407 102.0 17.4 -63.7 132.7 0.1 42.5 13.7 38 38 A G T 3 S+ 0 0 69 1,-0.2 2,-0.6 -2,-0.1 -1,-0.2 0.215 95.3 118.6 90.7 -13.6 0.1 41.6 10.1 39 39 A C < - 0 0 26 -3,-1.6 -1,-0.2 1,-0.1 -5,-0.1 -0.783 40.5-174.0 -93.0 123.1 3.0 43.8 9.1 40 40 A D + 0 0 111 -2,-0.6 2,-0.2 -3,-0.1 -1,-0.1 0.284 38.7 131.8 -96.7 8.9 6.0 42.0 7.7 41 41 A K + 0 0 126 -8,-0.1 -7,-2.4 11,-0.0 2,-0.3 -0.427 30.3 176.1 -70.8 134.1 8.3 45.0 7.5 42 42 A R E -B 33 0B 53 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.2 -0.963 9.0-166.7-137.8 155.6 11.8 44.5 9.0 43 43 A F E -B 32 0B 38 -11,-2.3 -11,-2.5 -2,-0.3 6,-0.0 -0.910 28.5-135.4-141.4 162.0 15.0 46.6 9.2 44 44 A S S S+ 0 0 49 -2,-0.3 -14,-0.1 -14,-0.2 3,-0.1 0.542 91.2 51.3 -94.6 -11.5 18.7 46.4 10.0 45 45 A L S > S- 0 0 71 -13,-0.1 4,-1.5 1,-0.1 3,-0.4 -0.980 74.5-133.5-129.1 142.2 18.7 49.5 12.2 46 46 A P H > S+ 0 0 75 0, 0.0 4,-2.4 0, 0.0 5,-0.2 0.860 107.2 59.3 -56.1 -39.1 16.6 50.6 15.2 47 47 A S H > S+ 0 0 78 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.867 104.3 49.6 -61.0 -38.7 16.2 54.1 13.7 48 48 A R H > S+ 0 0 108 -3,-0.4 4,-1.9 2,-0.2 -1,-0.2 0.863 110.7 50.0 -68.9 -36.7 14.6 52.7 10.5 49 49 A L H X S+ 0 0 25 -4,-1.5 4,-2.3 2,-0.2 -2,-0.2 0.922 110.5 50.1 -63.6 -44.7 12.2 50.7 12.6 50 50 A K H X S+ 0 0 136 -4,-2.4 4,-2.0 1,-0.2 -2,-0.2 0.928 109.8 49.7 -62.8 -45.4 11.3 53.7 14.6 51 51 A R H X S+ 0 0 158 -4,-2.2 4,-1.6 1,-0.2 -1,-0.2 0.907 111.0 51.0 -56.6 -43.5 10.7 55.8 11.5 52 52 A H H X S+ 0 0 28 -4,-1.9 4,-1.6 1,-0.2 -2,-0.2 0.883 107.3 52.0 -64.2 -39.2 8.5 53.0 10.2 53 53 A E H X S+ 0 0 73 -4,-2.3 4,-1.1 1,-0.2 -1,-0.2 0.866 106.6 54.5 -66.8 -33.8 6.4 52.9 13.4 54 54 A K H X S+ 0 0 141 -4,-2.0 4,-0.9 1,-0.2 -1,-0.2 0.860 103.9 55.4 -65.3 -35.1 5.8 56.7 13.1 55 55 A V H >< S+ 0 0 69 -4,-1.6 3,-0.8 1,-0.2 -2,-0.2 0.901 103.0 55.6 -63.1 -40.2 4.5 56.1 9.6 56 56 A H H 3< S+ 0 0 73 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.848 104.1 55.1 -56.5 -36.5 2.0 53.6 11.1 57 57 A A H 3< S+ 0 0 82 -4,-1.1 -1,-0.2 -3,-0.1 -2,-0.2 0.723 101.4 76.9 -71.9 -23.6 0.8 56.4 13.4 58 58 A G S << S- 0 0 14 -4,-0.9 14,-0.2 -3,-0.8 -3,-0.1 0.225 94.0 -86.2 -76.6-161.2 0.1 58.7 10.5 59 59 A Y E -C 71 0C 93 12,-2.5 12,-2.7 14,-0.1 2,-0.1 -0.863 39.7-153.0-119.6 94.1 -2.7 59.0 7.9 60 60 A P E -C 70 0C 63 0, 0.0 2,-0.3 0, 0.0 10,-0.2 -0.451 20.5-116.1 -72.5 139.0 -2.1 56.8 4.8 61 61 A C + 0 0 12 8,-2.5 8,-0.0 -2,-0.1 6,-0.0 -0.583 35.1 171.2 -70.9 127.9 -3.7 57.8 1.5 62 62 A K + 0 0 168 -2,-0.3 -1,-0.1 1,-0.0 3,-0.1 0.213 58.1 91.2-122.1 11.2 -6.3 55.3 0.3 63 63 A K S S+ 0 0 125 1,-0.2 2,-0.4 2,-0.0 -1,-0.0 0.902 102.2 26.9 -65.8 -43.5 -7.7 57.3 -2.6 64 64 A D - 0 0 69 1,-0.1 -1,-0.2 3,-0.1 3,-0.2 -0.978 69.6-151.9-118.6 133.6 -5.0 55.5 -4.8 65 65 A D S S+ 0 0 166 -2,-0.4 -1,-0.1 1,-0.2 -2,-0.0 0.634 101.8 53.8 -77.2 -13.6 -3.6 52.0 -3.9 66 66 A S S S+ 0 0 97 -3,-0.0 -1,-0.2 2,-0.0 2,-0.2 0.679 85.1 106.2 -85.1 -22.7 -0.4 53.1 -5.7 67 67 A C - 0 0 34 -3,-0.2 -6,-0.1 1,-0.1 -3,-0.1 -0.410 51.0-166.0 -70.7 131.7 0.0 56.3 -3.6 68 68 A S + 0 0 118 -2,-0.2 2,-0.2 -8,-0.1 -1,-0.1 0.194 43.8 129.2-100.6 13.4 2.8 56.2 -1.0 69 69 A F + 0 0 59 -9,-0.0 -8,-2.5 8,-0.0 2,-0.4 -0.518 29.9 177.6 -73.2 133.5 1.7 59.3 0.9 70 70 A V E -C 60 0C 49 -10,-0.2 2,-0.2 -2,-0.2 -12,-0.1 -0.933 23.6-137.4-134.4 111.2 1.2 59.1 4.6 71 71 A G E -C 59 0C 2 -12,-2.7 -12,-2.5 -2,-0.4 3,-0.1 -0.465 7.1-153.8 -71.0 135.6 0.3 62.3 6.3 72 72 A K S S+ 0 0 187 -14,-0.2 2,-0.3 -2,-0.2 -1,-0.1 0.758 84.0 24.8 -72.4 -29.1 1.9 63.3 9.6 73 73 A T S > S- 0 0 63 -14,-0.1 4,-2.0 1,-0.1 5,-0.1 -0.914 79.6-116.2-134.2 162.9 -1.1 65.4 10.5 74 74 A W H > S+ 0 0 137 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.889 116.0 56.0 -65.2 -38.9 -4.8 65.5 9.7 75 75 A T H > S+ 0 0 112 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.915 110.2 44.1 -57.7 -47.1 -4.4 68.9 8.1 76 76 A L H > S+ 0 0 82 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.821 111.8 54.4 -71.7 -31.8 -1.7 67.6 5.7 77 77 A Y H X S+ 0 0 30 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.951 110.1 44.5 -63.0 -51.0 -3.8 64.5 5.0 78 78 A L H X S+ 0 0 81 -4,-2.5 4,-1.6 1,-0.2 -2,-0.2 0.830 111.8 54.4 -67.8 -29.1 -6.9 66.4 4.0 79 79 A K H X S+ 0 0 102 -4,-1.6 4,-2.0 -5,-0.2 -1,-0.2 0.890 109.7 47.4 -65.9 -42.4 -4.7 68.8 1.9 80 80 A H H X S+ 0 0 23 -4,-1.8 4,-1.7 2,-0.2 -2,-0.2 0.918 110.1 52.0 -63.5 -46.3 -3.2 65.8 0.1 81 81 A V H < S+ 0 0 42 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.844 114.3 44.1 -60.1 -35.2 -6.7 64.3 -0.6 82 82 A A H < S+ 0 0 85 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.858 119.0 39.7 -78.2 -37.3 -7.9 67.6 -2.0 83 83 A E H < S+ 0 0 129 -4,-2.0 2,-0.3 -5,-0.1 -2,-0.2 0.570 112.9 55.0 -94.0 -12.0 -4.9 68.4 -4.2 84 84 A C < 0 0 49 -4,-1.7 -21,-0.0 -5,-0.1 0, 0.0 -0.830 360.0 360.0-125.6 160.1 -4.1 64.9 -5.5 85 85 A H 0 0 124 -2,-0.3 -21,-0.0 -22,-0.0 -4,-0.0 -0.259 360.0 360.0 61.8 360.0 -5.9 62.1 -7.4