==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS 21-MAY-01 1J8C . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN HPLIC-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.J.WALTERS,M.F.KLEIJNEN,A.M.GOH,G.WAGNER,P.M.HOWLEY . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8367.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 56.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 15.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 226 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -63.8 -1.5 4.7 -40.0 2 2 A A + 0 0 60 3,-0.0 3,-0.4 2,-0.0 0, 0.0 0.431 360.0 175.5-148.0 -44.8 -2.7 7.0 -42.8 3 3 A E - 0 0 144 1,-0.2 2,-1.1 3,-0.0 3,-0.1 0.088 59.5 -55.9 52.1-175.7 -0.2 9.7 -43.6 4 4 A N S S- 0 0 174 1,-0.1 -1,-0.2 0, 0.0 2,-0.0 -0.646 109.6 -29.1 -98.3 81.2 -1.0 12.1 -46.5 5 5 A G - 0 0 60 -2,-1.1 2,-0.2 -3,-0.4 -1,-0.1 0.037 60.6-138.8 93.8 153.0 -1.4 9.7 -49.4 6 6 A E + 0 0 117 -3,-0.1 -1,-0.1 1,-0.0 -3,-0.0 -0.722 24.6 169.1-153.2 98.5 0.2 6.2 -49.9 7 7 A S + 0 0 131 -2,-0.2 2,-0.5 2,-0.0 -1,-0.0 -0.064 44.4 120.0-100.2 34.9 1.6 5.1 -53.3 8 8 A S - 0 0 97 1,-0.1 -2,-0.0 3,-0.0 0, 0.0 -0.849 48.6-154.1-102.5 131.3 3.4 2.0 -51.9 9 9 A G - 0 0 63 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.016 46.0 -48.7 -84.3-161.8 2.4 -1.5 -53.1 10 10 A P - 0 0 127 0, 0.0 -1,-0.2 0, 0.0 4,-0.1 -0.481 61.3-119.5 -73.1 140.6 2.7 -4.8 -51.2 11 11 A P - 0 0 98 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 -0.199 25.5-106.5 -72.8 168.9 6.1 -5.4 -49.6 12 12 A R S S+ 0 0 243 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.982 104.5 45.3 -61.9 -56.1 8.3 -8.5 -50.6 13 13 A P S S- 0 0 96 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.065 75.8-147.6 -73.6-169.4 7.6 -10.4 -47.4 14 14 A S - 0 0 109 -4,-0.1 2,-0.3 2,-0.0 -2,-0.0 -0.548 6.5-143.4-166.8 94.1 4.1 -10.8 -45.8 15 15 A R + 0 0 249 -2,-0.1 3,-0.1 1,-0.1 0, 0.0 -0.432 37.2 161.2 -62.9 120.6 3.5 -11.0 -42.0 16 16 A G - 0 0 54 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 -0.286 46.5 -34.5-120.3-152.4 0.6 -13.5 -41.5 17 17 A P S S+ 0 0 138 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.497 71.7 145.8 -72.6 135.2 -0.7 -15.6 -38.7 18 18 A A - 0 0 94 -2,-0.2 2,-1.3 -3,-0.1 3,-0.3 -0.726 62.2 -60.6-148.5-161.4 2.0 -17.0 -36.3 19 19 A A + 0 0 75 -2,-0.2 0, 0.0 1,-0.2 0, 0.0 -0.397 62.2 151.3 -91.2 61.5 2.6 -17.8 -32.6 20 20 A A - 0 0 94 -2,-1.3 -1,-0.2 1,-0.0 0, 0.0 0.807 30.7-176.5 -62.2 -25.5 2.0 -14.3 -31.3 21 21 A Q + 0 0 162 -3,-0.3 -1,-0.0 1,-0.1 -3,-0.0 0.077 27.0 150.9 52.3-174.8 0.9 -15.9 -28.0 22 22 A G + 0 0 58 2,-0.1 2,-0.3 3,-0.0 4,-0.1 0.013 62.5 64.9 142.1 -30.7 -0.4 -13.6 -25.2 23 23 A S S S+ 0 0 126 1,-0.1 -2,-0.1 2,-0.1 2,-0.0 -0.526 80.0 81.8-119.8 66.9 -2.9 -15.8 -23.3 24 24 A A S S- 0 0 73 -2,-0.3 -1,-0.1 2,-0.0 -2,-0.1 -0.410 110.1 -45.3-167.4 82.6 -0.8 -18.6 -21.8 25 25 A A S S+ 0 0 108 1,-0.2 -2,-0.1 -3,-0.1 -3,-0.0 0.965 79.2 153.9 52.6 83.2 1.1 -18.0 -18.5 26 26 A A - 0 0 71 -4,-0.1 -1,-0.2 2,-0.0 -2,-0.0 -0.765 21.7-169.1-146.5 98.3 2.7 -14.6 -19.2 27 27 A P - 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.030 11.5-155.6 -72.5-173.6 3.6 -12.3 -16.2 28 28 A A - 0 0 74 0, 0.0 23,-0.2 0, 0.0 3,-0.1 0.111 47.5 -94.9-155.6 26.9 4.6 -8.6 -16.7 29 29 A E - 0 0 109 1,-0.2 2,-0.6 21,-0.1 22,-0.4 0.966 37.0-158.8 51.8 81.0 6.7 -7.7 -13.6 30 30 A P + 0 0 103 0, 0.0 2,-3.5 0, 0.0 -1,-0.2 -0.071 40.3 143.2 -82.0 38.7 4.0 -6.1 -11.3 31 31 A K - 0 0 128 -2,-0.6 2,-0.9 -3,-0.1 19,-0.5 -0.341 37.2-165.8 -74.4 64.8 6.6 -4.3 -9.3 32 32 A I - 0 0 79 -2,-3.5 2,-0.2 17,-0.2 -1,-0.1 -0.360 4.2-156.4 -58.0 99.9 4.1 -1.4 -9.1 33 33 A I E -A 48 0A 3 15,-1.8 15,-1.5 -2,-0.9 2,-0.4 -0.525 14.2-122.0 -78.7 146.3 6.3 1.4 -7.8 34 34 A K E -A 47 0A 105 -2,-0.2 62,-0.8 13,-0.2 2,-0.5 -0.740 25.0-167.6 -91.4 132.8 4.5 4.3 -6.0 35 35 A V E -Ab 46 96A 1 11,-2.4 11,-2.3 -2,-0.4 2,-0.9 -0.937 10.0-152.6-123.1 114.2 4.9 7.8 -7.5 36 36 A T E -Ab 45 97A 17 60,-1.9 62,-1.8 -2,-0.5 2,-0.5 -0.714 16.9-170.6 -86.3 108.1 3.9 10.9 -5.4 37 37 A V E -Ab 44 98A 0 7,-2.0 7,-1.7 -2,-0.9 2,-0.6 -0.852 11.0-149.1-102.3 128.4 2.9 13.6 -7.9 38 38 A K E +Ab 43 99A 67 60,-1.8 62,-1.4 -2,-0.5 5,-0.2 -0.823 22.8 176.6 -97.3 122.7 2.3 17.1 -6.5 39 39 A T - 0 0 21 3,-1.8 2,-3.3 -2,-0.6 3,-0.4 -0.776 48.1 -87.5-120.7 168.0 -0.3 19.2 -8.5 40 40 A P S S+ 0 0 100 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.300 122.7 36.8 -70.5 62.4 -1.9 22.6 -8.1 41 41 A K S S- 0 0 156 -2,-3.3 2,-0.3 1,-0.2 -3,-0.0 0.134 122.5 -33.0-174.7 -46.5 -4.7 21.2 -5.9 42 42 A E - 0 0 133 -3,-0.4 -3,-1.8 -5,-0.1 2,-0.6 -0.977 64.9 -81.0-173.6-179.2 -3.4 18.4 -3.6 43 43 A K E +A 38 0A 148 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.881 45.7 174.2-105.6 115.3 -0.8 15.5 -3.3 44 44 A E E -A 37 0A 77 -7,-1.7 -7,-2.0 -2,-0.6 2,-0.2 -0.965 19.6-145.0-123.2 134.0 -1.9 12.3 -5.0 45 45 A E E -A 36 0A 90 -2,-0.4 2,-0.3 -9,-0.2 -9,-0.3 -0.651 14.2-154.4 -93.5 151.5 0.2 9.1 -5.4 46 46 A F E -A 35 0A 48 -11,-2.3 -11,-2.4 -2,-0.2 2,-0.5 -0.938 9.7-133.6-126.5 150.1 -0.0 6.9 -8.5 47 47 A A E +A 34 0A 68 -2,-0.3 -13,-0.2 -13,-0.2 -15,-0.1 -0.845 30.6 169.9-102.2 133.4 0.7 3.2 -9.1 48 48 A V E -A 33 0A 10 -15,-1.5 -15,-1.8 -2,-0.5 2,-0.3 -0.998 40.3 -99.3-143.9 147.6 2.8 2.2 -12.2 49 49 A P > - 0 0 49 0, 0.0 3,-0.6 0, 0.0 -17,-0.2 -0.464 34.2-122.8 -67.2 126.3 4.4 -1.0 -13.4 50 50 A E T 3 S+ 0 0 55 -19,-0.5 2,-0.3 1,-0.3 -18,-0.1 0.716 111.0 55.4 -42.4 -20.5 8.2 -0.9 -12.6 51 51 A N T 3 S+ 0 0 82 -22,-0.4 2,-0.3 -23,-0.2 -1,-0.3 -0.456 84.2 112.6-115.0 63.4 8.7 -1.4 -16.3 52 52 A S < - 0 0 27 -3,-0.6 36,-0.7 -2,-0.3 2,-0.2 -0.935 58.0-126.9-130.6 155.0 6.7 1.5 -17.8 53 53 A S >> - 0 0 72 -2,-0.3 4,-1.5 33,-0.1 3,-0.7 -0.666 24.3-117.9 -98.8 156.5 7.8 4.7 -19.8 54 54 A V H 3> S+ 0 0 2 31,-0.7 4,-4.1 28,-0.3 5,-0.3 0.867 108.0 72.7 -60.9 -34.3 6.8 8.2 -18.8 55 55 A Q H 3> S+ 0 0 138 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.917 103.0 41.1 -48.5 -44.1 4.9 8.6 -22.1 56 56 A Q H <> S+ 0 0 143 -3,-0.7 4,-1.3 2,-0.2 -1,-0.2 0.970 118.3 44.7 -69.7 -51.6 2.2 6.3 -20.8 57 57 A F H X S+ 0 0 18 -4,-1.5 4,-1.8 1,-0.2 5,-0.3 0.887 108.0 60.8 -59.9 -37.1 2.1 7.8 -17.3 58 58 A K H X S+ 0 0 25 -4,-4.1 4,-1.4 1,-0.2 -1,-0.2 0.940 107.7 42.9 -57.6 -46.0 2.2 11.3 -18.8 59 59 A E H X S+ 0 0 131 -4,-1.5 4,-2.0 -5,-0.3 5,-0.3 0.740 105.9 67.2 -73.3 -19.6 -1.1 10.7 -20.6 60 60 A A H X S+ 0 0 35 -4,-1.3 4,-2.6 2,-0.2 5,-0.5 0.972 103.8 40.5 -65.7 -52.3 -2.5 9.0 -17.4 61 61 A I H X>S+ 0 0 0 -4,-1.8 5,-1.7 3,-0.2 4,-1.5 0.927 111.9 58.0 -63.7 -41.9 -2.6 12.2 -15.3 62 62 A S H X5S+ 0 0 19 -4,-1.4 4,-0.7 -5,-0.3 5,-0.4 0.958 115.1 35.4 -53.7 -52.0 -3.8 14.2 -18.3 63 63 A K H <5S+ 0 0 153 -4,-2.0 -2,-0.2 3,-0.2 -1,-0.2 0.972 131.1 30.4 -68.6 -53.9 -6.9 12.0 -18.7 64 64 A R H <5S+ 0 0 182 -4,-2.6 -3,-0.2 -5,-0.3 -2,-0.2 0.975 131.1 35.0 -72.2 -54.3 -7.6 11.3 -15.0 65 65 A F H <5S- 0 0 42 -4,-1.5 -3,-0.2 -5,-0.5 -2,-0.2 0.889 98.2-145.9 -68.0 -36.5 -6.2 14.5 -13.4 66 66 A K << + 0 0 173 -5,-1.7 -4,-0.2 -4,-0.7 -3,-0.2 0.980 60.4 101.9 68.7 81.3 -7.4 16.6 -16.4 67 67 A S S S- 0 0 60 -5,-0.4 2,-0.3 1,-0.3 -5,-0.1 0.267 79.5 -49.1-153.0 -65.4 -4.9 19.4 -16.9 68 68 A Q - 0 0 70 -10,-0.1 -1,-0.3 1,-0.1 -2,-0.1 -0.960 29.5-162.7-167.9-176.9 -2.3 18.9 -19.7 69 69 A T S S+ 0 0 48 -2,-0.3 -1,-0.1 -7,-0.1 -9,-0.0 0.376 82.3 46.0-145.9 -63.9 0.2 16.5 -21.3 70 70 A D S S+ 0 0 132 1,-0.2 33,-0.1 32,-0.1 -2,-0.1 0.986 127.2 30.0 -54.9 -63.6 2.8 18.0 -23.7 71 71 A Q S S+ 0 0 92 31,-0.1 32,-1.6 2,-0.0 -1,-0.2 0.798 101.4 102.7 -67.8 -25.5 3.7 20.9 -21.4 72 72 A L E +C 102 0A 2 30,-0.2 2,-0.3 28,-0.1 30,-0.2 -0.392 48.5 149.2 -61.3 125.2 2.9 18.7 -18.4 73 73 A V E -C 101 0A 10 28,-1.5 28,-2.1 -2,-0.2 2,-0.4 -0.954 41.3-119.5-150.1 167.8 6.2 17.5 -16.8 74 74 A L E -CD 100 81A 7 7,-0.9 7,-2.6 -2,-0.3 2,-1.0 -0.940 13.5-142.9-118.3 135.9 7.5 16.5 -13.4 75 75 A I E -CD 99 80A 50 24,-3.5 24,-1.6 -2,-0.4 2,-0.9 -0.762 20.1-175.7 -97.2 96.9 10.5 18.2 -11.7 76 76 A F E > S- D 0 79A 32 -2,-1.0 3,-1.8 3,-0.7 22,-0.1 -0.780 74.6 -36.9 -95.3 104.2 12.4 15.5 -9.8 77 77 A A T 3 S- 0 0 94 -2,-0.9 -1,-0.2 1,-0.3 3,-0.1 0.871 122.6 -48.7 52.5 35.9 15.2 17.1 -7.8 78 78 A G T 3 S+ 0 0 60 1,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 -0.132 121.7 107.1 97.0 -40.2 15.7 19.5 -10.7 79 79 A K E < S-D 76 0A 141 -3,-1.8 -3,-0.7 -4,-0.1 2,-0.6 0.058 79.9-105.4 -59.8-178.5 15.7 16.8 -13.4 80 80 A I E -D 75 0A 56 -5,-0.2 2,-2.6 -3,-0.1 5,-0.3 -0.798 19.5-155.1-117.1 94.5 12.7 16.4 -15.7 81 81 A L E +D 74 0A 8 -7,-2.6 -7,-0.9 -2,-0.6 2,-0.2 -0.373 60.7 106.5 -65.1 81.4 10.6 13.3 -14.8 82 82 A K S > S- 0 0 45 -2,-2.6 3,-0.9 -9,-0.2 -28,-0.3 -0.551 92.8 -61.3-138.0-155.4 9.2 13.1 -18.3 83 83 A D T 3 S+ 0 0 73 1,-0.2 -28,-0.1 -29,-0.2 -29,-0.1 0.747 115.5 81.7 -72.8 -19.6 9.6 11.0 -21.5 84 84 A Q T 3 S+ 0 0 143 -4,-0.2 -1,-0.2 -30,-0.1 2,-0.2 0.863 109.4 11.1 -53.7 -32.8 13.3 11.9 -21.6 85 85 A D S < S- 0 0 43 -3,-0.9 -31,-0.7 -5,-0.3 2,-0.5 -0.728 91.8 -90.9-133.6-175.5 13.9 9.2 -19.0 86 86 A T >>> - 0 0 40 -2,-0.2 5,-1.0 1,-0.2 4,-0.9 -0.875 20.6-143.7-105.8 130.4 11.9 6.3 -17.5 87 87 A L G >4>S+ 0 0 6 -2,-0.5 5,-3.4 1,-0.3 3,-0.9 0.942 107.2 43.2 -55.4 -46.9 9.9 6.9 -14.3 88 88 A I G 345S+ 0 0 33 -36,-0.7 -1,-0.3 1,-0.2 -35,-0.1 0.677 109.4 61.5 -72.8 -15.0 10.8 3.4 -13.0 89 89 A Q G <45S- 0 0 117 -3,-0.7 -1,-0.2 -37,-0.2 -2,-0.2 0.609 137.0 -32.6 -88.2 -10.8 14.4 4.0 -14.1 90 90 A H T <<5S+ 0 0 111 -3,-0.9 3,-0.3 -4,-0.9 -3,-0.2 0.264 123.3 74.4-173.3 -41.6 15.1 7.0 -11.9 91 91 A G T