==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 22-MAY-01 1J8K . COMPND 2 MOLECULE: FIBRONECTIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NIIMI,M.OSAWA,N.YAMAJI,K.YASUNAGA,H.SAKASHITA,T.MASE, . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6302.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 33.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 22 23.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 153 0, 0.0 75,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 156.6 -6.8 13.9 6.5 2 2 A I - 0 0 10 74,-0.1 24,-0.1 1,-0.1 74,-0.1 -0.091 360.0-153.9 -70.4 178.5 -5.0 10.9 5.0 3 3 A D - 0 0 82 22,-0.1 -1,-0.1 0, 0.0 23,-0.1 0.334 34.1-118.7-137.6 3.9 -3.5 8.1 7.2 4 4 A R - 0 0 109 21,-0.1 69,-0.0 23,-0.0 77,-0.0 0.568 27.5-108.0 61.8 135.0 -0.7 6.6 5.1 5 5 A P - 0 0 25 0, 0.0 19,-0.1 0, 0.0 77,-0.1 0.017 21.7-152.3 -79.8-169.2 -0.8 2.9 4.2 6 6 A K - 0 0 176 1,-0.2 2,-0.4 17,-0.2 16,-0.0 0.483 60.3 -11.1-132.4 -75.0 1.4 0.2 5.6 7 7 A G - 0 0 35 77,-0.1 16,-0.2 79,-0.0 -1,-0.2 -0.997 56.8-144.6-137.9 140.7 2.2 -2.9 3.5 8 8 A L - 0 0 31 -2,-0.4 14,-0.3 77,-0.3 2,-0.2 -0.574 13.2-150.4 -99.4 166.2 0.6 -4.2 0.2 9 9 A A E -A 21 0A 56 12,-3.5 12,-2.4 -2,-0.2 2,-0.4 -0.745 7.9-128.0-127.5 177.2 -0.0 -7.8 -0.8 10 10 A F E -A 20 0A 63 10,-0.2 10,-0.3 -2,-0.2 3,-0.1 -0.984 16.4-179.1-131.5 139.8 -0.2 -9.7 -4.1 11 11 A T E S- 0 0 90 8,-3.1 2,-0.5 -2,-0.4 -1,-0.1 0.844 74.9 -2.5 -99.4 -73.7 -2.9 -12.1 -5.4 12 12 A D E - 0 0 96 7,-0.2 7,-2.0 2,-0.0 2,-0.4 -0.930 66.8-174.3-126.1 111.5 -1.9 -13.5 -8.8 13 13 A V E +A 18 0A 33 -2,-0.5 2,-0.3 5,-0.3 5,-0.3 -0.866 10.7 164.9-106.7 135.8 1.4 -12.4 -10.4 14 14 A D E > -A 17 0A 67 3,-1.6 3,-2.3 -2,-0.4 78,-0.2 -0.997 52.7-105.4-146.8 150.8 2.4 -13.4 -14.0 15 15 A V T 3 S+ 0 0 17 76,-3.3 48,-1.1 -2,-0.3 51,-0.1 0.798 126.8 23.6 -45.8 -26.8 5.0 -12.3 -16.6 16 16 A D T 3 S+ 0 0 76 1,-0.3 -1,-0.3 75,-0.2 45,-0.2 -0.182 130.5 33.9-134.7 44.8 2.0 -10.8 -18.4 17 17 A S E < +A 14 0A 43 -3,-2.3 -3,-1.6 43,-0.2 2,-0.4 -0.494 57.8 175.8 167.1 118.4 -0.7 -10.2 -15.6 18 18 A I E -AB 13 59A 7 41,-1.2 41,-2.1 -5,-0.3 2,-0.5 -0.993 14.0-157.0-140.6 136.7 -0.4 -9.3 -11.9 19 19 A K E - B 0 58A 83 -7,-2.0 -8,-3.1 -2,-0.4 2,-0.3 -0.933 18.0-179.6-113.4 125.1 -3.0 -8.6 -9.2 20 20 A I E -AB 10 57A 4 37,-1.6 37,-2.7 -2,-0.5 2,-0.4 -0.900 12.6-164.7-124.0 154.3 -2.0 -6.5 -6.2 21 21 A A E -AB 9 56A 23 -12,-2.4 -12,-3.5 -2,-0.3 35,-0.3 -0.943 7.8-168.5-139.7 117.2 -3.9 -5.3 -3.1 22 22 A W - 0 0 9 33,-1.5 2,-0.4 -2,-0.4 -14,-0.2 -0.522 31.9 -97.0 -99.3 170.8 -2.6 -2.5 -0.8 23 23 A E - 0 0 113 -16,-0.2 -17,-0.2 -2,-0.2 -1,-0.0 -0.722 40.0-114.0 -89.4 132.6 -4.0 -1.6 2.7 24 24 A S - 0 0 40 -2,-0.4 2,-0.5 1,-0.1 -1,-0.1 -0.309 22.0-122.1 -61.6 147.1 -6.4 1.4 2.8 25 25 A P - 0 0 2 0, 0.0 -1,-0.1 0, 0.0 -21,-0.1 -0.080 39.1-115.0 -82.8 38.2 -5.1 4.4 4.6 26 26 A Q S S+ 0 0 164 -2,-0.5 -2,-0.1 1,-0.2 -3,-0.0 0.768 104.1 85.4 36.4 27.7 -8.0 4.3 7.1 27 27 A G S S- 0 0 21 0, 0.0 -1,-0.2 0, 0.0 -23,-0.0 0.155 98.7-116.2-139.8 20.3 -9.0 7.7 5.5 28 28 A Q - 0 0 141 24,-0.1 2,-0.1 1,-0.1 24,-0.1 0.891 36.0-139.4 41.2 92.4 -11.0 6.7 2.4 29 29 A V - 0 0 13 1,-0.1 47,-0.2 47,-0.0 3,-0.1 -0.419 12.4-151.9 -78.9 157.9 -8.8 8.1 -0.4 30 30 A S S S+ 0 0 74 45,-0.7 2,-0.3 1,-0.3 46,-0.1 0.649 79.0 12.6-102.0 -19.6 -10.3 9.8 -3.4 31 31 A R - 0 0 119 44,-0.3 44,-1.3 18,-0.2 2,-0.4 -0.997 62.4-148.6-153.8 153.1 -7.5 8.9 -5.9 32 32 A Y E -C 74 0B 3 -2,-0.3 2,-1.1 42,-0.2 42,-0.2 -0.967 5.6-153.8-130.6 122.5 -4.6 6.5 -6.0 33 33 A R E +C 73 0B 130 40,-2.9 40,-1.3 -2,-0.4 2,-0.7 -0.744 20.2 178.9 -94.5 96.4 -1.3 7.2 -7.9 34 34 A V E +CD 72 46B 0 12,-1.5 12,-2.0 -2,-1.1 2,-0.4 -0.845 2.7 176.8-102.2 112.6 0.1 3.8 -8.8 35 35 A T E -CD 71 45B 18 36,-2.3 36,-3.9 -2,-0.7 2,-0.4 -0.895 10.1-166.5-114.4 143.7 3.4 4.0 -10.8 36 36 A Y E -CD 70 44B 33 8,-1.4 8,-1.4 -2,-0.4 2,-0.3 -0.982 5.3-171.5-131.9 128.0 5.5 1.0 -11.9 37 37 A S E -CD 69 43B 36 32,-3.1 32,-1.6 -2,-0.4 6,-0.3 -0.796 1.0-169.8-115.9 159.9 9.1 1.2 -13.2 38 38 A S E > - D 0 42B 18 4,-1.0 2,-3.1 -2,-0.3 4,-0.8 -0.996 35.9-112.6-149.7 143.2 11.4 -1.3 -14.8 39 39 A P T 4 S+ 0 0 106 0, 0.0 4,-0.0 0, 0.0 -2,-0.0 -0.312 110.9 17.3 -71.3 62.6 15.1 -1.5 -15.7 40 40 A E T 4 S+ 0 0 189 -2,-3.1 -2,-0.0 2,-0.0 -3,-0.0 -0.198 125.1 41.8 171.9 -68.6 14.3 -1.6 -19.5 41 41 A D T 4 S- 0 0 120 1,-0.2 2,-0.3 -4,-0.0 -4,-0.0 0.901 98.3-134.5 -72.4 -38.7 10.8 -0.6 -20.5 42 42 A G E < -D 38 0B 29 -4,-0.8 -4,-1.0 2,-0.0 2,-0.3 -0.872 30.3 -53.7 119.5-154.4 10.7 2.4 -18.2 43 43 A I E -D 37 0B 99 -2,-0.3 2,-0.3 -6,-0.3 -6,-0.3 -0.852 41.4-162.6-124.5 162.4 7.9 3.6 -15.8 44 44 A H E -D 36 0B 119 -8,-1.4 -8,-1.4 -2,-0.3 2,-0.5 -0.961 17.5-124.9-140.7 158.8 4.2 4.4 -16.2 45 45 A E E -D 35 0B 128 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.900 19.8-161.0-109.6 128.8 1.5 6.3 -14.2 46 46 A L E -D 34 0B 45 -12,-2.0 -12,-1.5 -2,-0.5 -2,-0.0 -0.869 8.3-174.0-108.2 138.2 -1.8 4.6 -13.3 47 47 A F + 0 0 111 -2,-0.4 2,-1.5 -14,-0.2 -14,-0.1 -0.486 18.8 156.4-130.0 66.3 -4.9 6.6 -12.2 48 48 A P - 0 0 51 0, 0.0 -15,-0.0 0, 0.0 -2,-0.0 -0.515 34.7-149.7 -89.5 69.1 -7.5 4.1 -11.1 49 49 A A - 0 0 58 -2,-1.5 -18,-0.2 -18,-0.1 -2,-0.1 -0.137 20.4-157.8 -41.9 102.1 -9.6 6.5 -8.9 50 50 A P - 0 0 20 0, 0.0 5,-0.1 0, 0.0 -1,-0.0 -0.053 15.7-152.9 -75.6-177.1 -10.8 3.9 -6.4 51 51 A D - 0 0 118 3,-0.2 4,-0.1 -20,-0.0 -2,-0.0 0.592 53.2 -83.2-130.2 -34.7 -13.9 4.4 -4.2 52 52 A G S S+ 0 0 37 2,-0.1 3,-0.1 -24,-0.1 -28,-0.1 0.070 118.9 64.5 150.2 -27.9 -13.4 2.3 -1.0 53 53 A E S S+ 0 0 185 1,-0.2 2,-0.9 2,-0.0 0, 0.0 0.715 93.8 64.5 -93.5 -22.6 -14.4 -1.3 -1.9 54 54 A E + 0 0 133 1,-0.1 -3,-0.2 2,-0.0 -1,-0.2 -0.756 52.6 158.2-103.4 91.3 -11.6 -1.8 -4.5 55 55 A D + 0 0 47 -2,-0.9 -33,-1.5 -3,-0.1 2,-0.2 -0.011 56.9 67.2-100.8 31.9 -8.3 -1.6 -2.6 56 56 A T E -B 21 0A 74 -35,-0.3 2,-0.3 -48,-0.1 -35,-0.3 -0.836 67.1-136.9-139.0 177.8 -6.4 -3.5 -5.3 57 57 A A E -B 20 0A 10 -37,-2.7 -37,-1.6 -2,-0.2 2,-0.5 -0.930 8.1-138.0-137.3 162.4 -5.2 -3.1 -8.9 58 58 A E E -B 19 0A 102 -2,-0.3 2,-2.3 -39,-0.2 -39,-0.2 -0.787 11.8-172.1-125.0 92.1 -5.0 -5.2 -12.1 59 59 A L E +B 18 0A 13 -41,-2.1 -41,-1.2 -2,-0.5 2,-0.7 -0.456 24.9 162.4 -80.2 72.4 -1.7 -4.8 -14.0 60 60 A Q + 0 0 122 -2,-2.3 -43,-0.2 -43,-0.2 -2,-0.1 -0.828 49.0 46.7 -98.1 116.9 -2.9 -6.8 -17.1 61 61 A G S S+ 0 0 66 -2,-0.7 -1,-0.2 -45,-0.2 -44,-0.1 0.673 70.6 129.6 122.0 55.1 -0.8 -6.2 -20.2 62 62 A L - 0 0 37 -3,-0.2 -46,-0.2 1,-0.1 -47,-0.1 0.269 35.4-163.3-106.2-127.0 2.9 -6.4 -19.3 63 63 A R + 0 0 205 -48,-1.1 -1,-0.1 1,-0.6 -47,-0.1 -0.015 56.3 81.2 172.5 -55.2 5.6 -8.5 -21.1 64 64 A P - 0 0 54 0, 0.0 -1,-0.6 0, 0.0 4,-0.1 -0.185 61.1-144.2 -71.2 167.1 8.8 -9.0 -19.1 65 65 A G + 0 0 24 -3,-0.1 27,-0.4 -49,-0.1 2,-0.2 -0.375 61.8 94.7-129.3 54.1 9.1 -11.6 -16.3 66 66 A S S S- 0 0 67 -51,-0.1 24,-3.8 25,-0.1 2,-0.7 -0.658 87.0 -55.0-131.2-171.0 11.3 -9.9 -13.7 67 67 A E E - E 0 89B 88 22,-0.3 2,-0.6 -2,-0.2 22,-0.3 -0.562 52.3-157.0 -72.5 111.8 11.0 -7.8 -10.5 68 68 A Y E - E 0 88B 13 20,-2.9 20,-1.5 -2,-0.7 2,-1.3 -0.781 10.1-139.8 -92.7 123.0 8.8 -4.8 -11.3 69 69 A T E +CE 37 87B 55 -32,-1.6 -32,-3.1 -2,-0.6 2,-0.3 -0.643 30.9 177.8 -82.9 96.9 9.3 -1.8 -9.0 70 70 A V E -CE 36 86B 7 16,-1.5 16,-3.2 -2,-1.3 2,-0.5 -0.734 16.2-157.7-100.5 149.9 5.8 -0.6 -8.4 71 71 A S E -CE 35 85B 24 -36,-3.9 -36,-2.3 -2,-0.3 2,-0.6 -0.913 1.5-162.7-130.0 109.8 4.9 2.4 -6.1 72 72 A V E +CE 34 84B 1 12,-3.4 12,-2.5 -2,-0.5 2,-0.5 -0.780 13.8 178.8 -92.4 121.9 1.3 2.7 -4.7 73 73 A V E -C 33 0B 19 -40,-1.3 -40,-2.9 -2,-0.6 9,-0.1 -0.962 19.1-142.5-126.9 122.7 0.6 6.2 -3.4 74 74 A A E -C 32 0B 0 -2,-0.5 7,-0.5 8,-0.4 2,-0.3 -0.279 22.3-155.9 -72.9 165.5 -2.8 7.2 -1.9 75 75 A L - 0 0 18 -44,-1.3 -45,-0.7 5,-0.1 -44,-0.3 -0.821 21.3-176.0-136.9 177.9 -4.1 10.7 -2.6 76 76 A H S S- 0 0 53 -2,-0.3 2,-4.2 3,-0.2 -74,-0.1 -0.387 72.0 -55.2-177.5 89.6 -6.4 13.4 -1.2 77 77 A D S S- 0 0 148 1,-0.2 -2,-0.0 -2,-0.1 0, 0.0 -0.180 128.5 -17.5 64.6 -58.2 -7.2 16.7 -3.1 78 78 A D S S+ 0 0 152 -2,-4.2 2,-0.3 0, 0.0 -1,-0.2 -0.150 99.2 123.6-174.5 66.1 -3.4 17.4 -3.3 79 79 A M - 0 0 96 -5,-0.0 -3,-0.2 2,-0.0 2,-0.1 -0.815 47.2-143.3-128.0 170.4 -1.2 15.4 -0.8 80 80 A E - 0 0 174 -2,-0.3 -5,-0.1 -5,-0.1 -6,-0.0 -0.516 24.4-171.9-133.4 67.9 1.8 13.0 -1.0 81 81 A S - 0 0 2 -7,-0.5 3,-0.1 1,-0.2 -5,-0.0 -0.105 52.6 -59.5 -55.6 159.7 1.3 10.3 1.6 82 82 A Q - 0 0 117 1,-0.1 2,-0.5 -77,-0.1 -8,-0.4 -0.156 62.9-116.3 -43.9 125.5 4.2 7.9 2.2 83 83 A P - 0 0 86 0, 0.0 2,-0.6 0, 0.0 -10,-0.2 -0.537 25.3-142.5 -70.1 115.6 4.8 6.2 -1.2 84 84 A L E -E 72 0B 18 -12,-2.5 -12,-3.4 -2,-0.5 2,-0.2 -0.691 15.1-149.4 -83.5 118.4 4.2 2.5 -0.7 85 85 A I E -E 71 0B 87 -2,-0.6 -77,-0.3 -14,-0.3 -14,-0.3 -0.546 12.5-169.8 -85.7 152.5 6.7 0.4 -2.8 86 86 A G E -E 70 0B 4 -16,-3.2 -16,-1.5 -2,-0.2 2,-1.1 -0.632 3.5-177.6-142.9 82.1 5.7 -3.0 -4.2 87 87 A T E +E 69 0B 71 -18,-0.2 2,-0.3 -2,-0.2 -18,-0.2 -0.678 18.9 164.1 -84.5 102.5 8.7 -4.9 -5.7 88 88 A Q E -E 68 0B 46 -20,-1.5 -20,-2.9 -2,-1.1 2,-0.8 -0.863 39.3-119.4-118.2 153.8 7.2 -8.1 -7.1 89 89 A S E -E 67 0B 51 -2,-0.3 2,-0.7 -22,-0.3 -22,-0.3 -0.792 26.4-129.2 -94.6 112.0 8.7 -10.7 -9.6 90 90 A T - 0 0 2 -24,-3.8 -75,-0.2 -2,-0.8 2,-0.2 -0.391 34.2-113.2 -60.0 105.6 6.7 -10.9 -12.8 91 91 A A - 0 0 36 -2,-0.7 -76,-3.3 -74,-0.2 -75,-0.2 -0.153 35.6-136.2 -44.3 102.3 6.2 -14.7 -13.0 92 92 A I - 0 0 87 -27,-0.4 2,-1.9 -2,-0.2 -77,-0.2 -0.043 35.8 -80.0 -55.6 167.4 8.2 -15.5 -16.1 93 93 A P 0 0 111 0, 0.0 -1,-0.2 0, 0.0 -28,-0.0 -0.502 360.0 360.0 -73.3 84.0 6.7 -18.0 -18.6 94 94 A A 0 0 154 -2,-1.9 -2,-0.0 -3,-0.1 -3,-0.0 0.937 360.0 360.0 -91.1 360.0 7.6 -21.2 -16.8