==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 23-MAY-01 1J8Z . COMPND 2 MOLECULE: HCYS BETA3-CYS ANALOGUE OF HIV GP41; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1648.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 4 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 202 0, 0.0 2,-0.3 0, 0.0 6,-0.0 0.000 360.0 360.0 360.0 96.2 -8.8 -4.8 -2.6 2 3 A W - 0 0 217 1,-0.2 4,-0.0 2,-0.0 0, 0.0 -0.984 360.0-151.8-145.5 152.8 -5.4 -4.3 -0.7 3 4 A G - 0 0 60 -2,-0.3 5,-0.3 4,-0.1 -1,-0.2 0.898 66.5 -9.5 -88.2 -85.7 -3.8 -1.7 1.7 4 5 A X S > S+ 0 0 58 3,-0.2 2,-1.4 1,-0.1 4,-0.6 0.991 97.0 42.3-105.8 -75.8 0.0 -1.5 1.4 5 6 A S T 4 S+ 0 0 127 1,-0.2 -1,-0.1 4,-0.1 -2,-0.0 -0.724 129.5 18.8 -74.6 86.6 4.2 -3.5 -0.5 6 7 A G T 4 S+ 0 0 81 -2,-1.4 -1,-0.2 -3,-0.1 3,-0.1 -0.271 132.2 44.3 152.3 -54.9 2.5 -4.2 -4.0 7 8 A K T 4 S- 0 0 132 1,-0.2 2,-0.2 -6,-0.0 -3,-0.2 0.975 132.9 -32.6 -77.2 -68.8 -0.5 -1.8 -4.1 8 9 A L S < S- 0 0 132 -4,-0.6 -1,-0.2 -5,-0.3 -3,-0.1 -0.822 70.2-114.0-160.1 113.0 0.9 1.5 -2.6 9 10 A I - 0 0 111 -2,-0.2 2,-1.2 1,-0.1 -4,-0.1 -0.084 29.7-111.5 -52.9 142.0 3.7 1.6 0.1 10 11 A C - 0 0 87 2,-0.1 2,-0.7 1,-0.0 -1,-0.1 -0.662 30.5-149.1 -82.1 95.2 2.9 3.1 3.6 11 12 A T + 0 0 127 -2,-1.2 2,-0.3 -3,-0.0 -1,-0.0 -0.544 34.2 152.9 -70.2 105.8 4.9 6.4 3.7 12 13 A T 0 0 130 -2,-0.7 -2,-0.1 0, 0.0 -1,-0.0 -0.884 360.0 360.0-141.8 102.7 5.8 6.9 7.5 13 14 A A 0 0 184 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.746 360.0 360.0 -90.8 360.0 9.0 9.0 8.2