==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID-BINDING PROTEIN 24-OCT-06 2J8B . COMPND 2 MOLECULE: CD59 GLYCOPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.J.LEATH,S.JOHNSON,P.ROVERSI,B.P.MORGAN,R.A.G.SMITH, . 78 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4935.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 55.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 23.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A M 0 0 166 0, 0.0 2,-0.6 0, 0.0 20,-0.1 0.000 360.0 360.0 360.0 160.0 -15.9 -8.7 9.5 2 1 A L - 0 0 30 18,-0.4 18,-2.8 22,-0.1 2,-0.5 -0.870 360.0-153.6 -92.1 123.2 -12.6 -7.2 10.5 3 2 A Q E +A 19 0A 56 -2,-0.6 66,-3.3 16,-0.2 67,-0.4 -0.893 21.6 171.2-101.3 126.7 -10.7 -5.9 7.5 4 3 A a E -A 18 0A 0 14,-1.9 14,-2.5 -2,-0.5 2,-0.4 -0.885 43.5 -99.4-125.3 156.9 -6.9 -5.7 7.9 5 4 A Y E +A 17 0A 54 -2,-0.3 2,-0.4 12,-0.2 23,-0.2 -0.665 49.2 179.4 -69.0 130.2 -3.9 -5.1 5.7 6 5 A N + 0 0 45 10,-2.7 33,-0.2 -2,-0.4 9,-0.1 -0.879 11.6 170.7-144.7 105.0 -2.7 -8.6 4.9 7 6 A b - 0 0 8 31,-2.4 31,-0.4 -2,-0.4 4,-0.1 -0.953 28.9-144.5-114.7 134.2 0.3 -9.3 2.7 8 7 A P S S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 31,-0.0 0.814 87.4 37.5 -69.2 -25.9 1.7 -12.8 2.5 9 8 A N S S- 0 0 111 -3,-0.0 29,-0.2 1,-0.0 27,-0.0 -0.860 104.6 -84.7-118.6 155.4 5.3 -11.5 2.2 10 9 A P - 0 0 63 0, 0.0 2,-0.3 0, 0.0 27,-0.2 -0.364 53.8-177.4 -59.7 141.9 7.0 -8.6 3.9 11 10 A T > - 0 0 56 25,-2.1 3,-0.6 1,-0.1 -4,-0.1 -0.996 35.8-126.6-149.0 135.9 6.3 -5.5 1.9 12 11 A A T 3 S+ 0 0 85 -2,-0.3 2,-0.1 1,-0.3 -1,-0.1 0.845 104.9 6.0 -58.9 -38.2 7.5 -1.9 2.3 13 12 A D T 3 S- 0 0 97 23,-0.1 -1,-0.3 -3,-0.1 2,-0.1 -0.567 79.0-152.9-149.6 84.8 3.9 -0.5 2.3 14 13 A b < + 0 0 7 -3,-0.6 59,-0.1 1,-0.2 -7,-0.1 -0.340 21.6 168.9 -62.2 125.0 1.2 -3.2 2.2 15 14 A K + 0 0 169 -2,-0.1 2,-0.8 -9,-0.1 -1,-0.2 0.289 37.5 118.8-117.1 3.5 -1.9 -1.9 0.6 16 15 A T - 0 0 75 2,-0.0 -10,-2.7 1,-0.0 2,-0.4 -0.653 46.7-164.6 -81.4 107.7 -3.7 -5.3 0.3 17 16 A A E +A 5 0A 42 -2,-0.8 2,-0.3 -12,-0.2 -12,-0.2 -0.802 12.2 175.2 -92.5 131.8 -6.9 -5.1 2.3 18 17 A V E -A 4 0A 40 -14,-2.5 -14,-1.9 -2,-0.4 2,-0.8 -0.965 36.7-118.0-134.5 150.7 -8.7 -8.3 3.1 19 18 A N E -A 3 0A 98 -2,-0.3 -16,-0.2 -16,-0.2 2,-0.1 -0.817 40.0-135.9 -83.0 112.4 -11.7 -9.4 5.2 20 19 A c - 0 0 7 -18,-2.8 -18,-0.4 -2,-0.8 7,-0.0 -0.359 19.2-110.3 -67.1 147.0 -10.2 -11.6 7.9 21 20 A S > - 0 0 55 1,-0.1 3,-2.1 -20,-0.1 -1,-0.1 -0.315 33.3-101.8 -70.7 165.1 -11.9 -14.8 8.7 22 21 A S T 3 S+ 0 0 119 1,-0.3 -1,-0.1 3,-0.1 -2,-0.1 0.569 115.1 78.0 -67.6 -8.6 -13.7 -15.2 12.0 23 22 A D T 3 S+ 0 0 113 2,-0.0 -1,-0.3 19,-0.0 2,-0.3 0.743 91.7 62.4 -63.6 -25.9 -10.7 -17.3 13.2 24 23 A F < + 0 0 85 -3,-2.1 18,-0.2 1,-0.1 -22,-0.1 -0.695 53.0 177.9-106.7 152.9 -8.8 -14.0 13.6 25 24 A D + 0 0 68 16,-1.7 2,-0.3 -2,-0.3 17,-0.2 0.282 62.9 51.2-129.6 3.2 -9.7 -11.1 16.0 26 25 A A E -B 41 0B 0 15,-2.1 15,-3.0 -24,-0.1 2,-0.5 -0.970 63.6-133.5-142.3 154.9 -6.8 -8.7 15.3 27 26 A a E -BC 40 65B 0 38,-2.8 38,-1.8 -2,-0.3 2,-0.4 -0.952 30.9-158.1-102.6 133.1 -4.8 -6.8 12.7 28 27 A L E -BC 39 64B 0 11,-2.9 11,-2.1 -2,-0.5 2,-0.4 -0.913 15.4-177.0-111.6 135.7 -1.0 -7.1 13.3 29 28 A I E -BC 38 63B 0 34,-2.4 34,-2.2 -2,-0.4 2,-0.4 -0.999 10.7-178.7-122.7 135.5 1.7 -4.8 12.0 30 29 A T E -BC 37 62B 0 7,-2.3 7,-2.8 -2,-0.4 2,-0.5 -0.997 14.0-158.7-132.0 136.2 5.3 -5.7 12.8 31 30 A K E +BC 36 61B 20 30,-2.2 30,-1.9 -2,-0.4 2,-0.4 -0.976 14.2 171.8-113.5 120.8 8.6 -3.9 11.9 32 31 A A E > -B 35 0B 4 3,-2.9 3,-2.0 -2,-0.5 2,-0.3 -0.890 69.5 -57.0-128.6 96.3 11.8 -5.9 11.9 33 32 A G T 3 S- 0 0 57 -2,-0.4 27,-0.0 1,-0.3 -1,-0.0 -0.538 119.5 -22.3 64.3-127.7 14.6 -3.7 10.5 34 33 A L T 3 S+ 0 0 158 -2,-0.3 2,-0.4 -3,-0.1 -1,-0.3 0.498 118.7 102.1 -88.3 -7.3 13.3 -2.7 7.0 35 34 A Q E < -B 32 0B 89 -3,-2.0 -3,-2.9 -25,-0.1 2,-0.4 -0.657 53.6-169.2 -80.6 129.4 10.9 -5.6 6.8 36 35 A V E -B 31 0B 14 -2,-0.4 -25,-2.1 -5,-0.2 2,-0.4 -0.985 1.3-165.2-120.9 130.3 7.3 -4.8 7.5 37 36 A Y E -B 30 0B 24 -7,-2.8 -7,-2.3 -2,-0.4 2,-0.4 -0.918 6.0-174.8-115.9 139.1 4.7 -7.4 8.1 38 37 A N E +B 29 0B 7 -2,-0.4 -31,-2.4 -31,-0.4 2,-0.3 -0.985 21.5 157.3-135.6 121.1 0.9 -6.9 8.0 39 38 A K E -B 28 0B 34 -11,-2.1 -11,-2.9 -2,-0.4 2,-0.3 -0.992 50.2-109.9-144.3 149.7 -1.4 -9.8 8.9 40 39 A c E +B 27 0B 15 -2,-0.3 2,-0.2 -13,-0.2 -13,-0.2 -0.654 61.7 159.5 -64.2 135.4 -4.8 -11.0 10.1 41 40 A W E -B 26 0B 31 -15,-3.0 -15,-2.1 -2,-0.3 -16,-1.7 -0.790 41.0-101.3-151.4-177.5 -3.8 -12.3 13.5 42 41 A K > - 0 0 69 -2,-0.2 3,-2.1 -18,-0.2 4,-0.1 -0.986 19.2-136.0-121.0 137.5 -5.0 -13.2 17.0 43 42 A F G > S+ 0 0 78 -2,-0.4 3,-2.0 1,-0.3 -1,-0.1 0.841 105.4 66.6 -56.4 -32.6 -4.6 -11.1 20.1 44 43 A E G 3 S+ 0 0 115 1,-0.3 -1,-0.3 -3,-0.1 6,-0.1 0.723 108.0 40.5 -63.4 -17.8 -3.6 -14.3 22.0 45 44 A H G < S+ 0 0 43 -3,-2.1 2,-1.4 1,-0.1 -1,-0.3 0.179 83.6 107.3-113.3 14.7 -0.5 -14.2 19.8 46 45 A d < + 0 0 18 -3,-2.0 2,-0.3 4,-0.1 18,-0.1 -0.583 57.6 99.0 -90.6 73.2 0.1 -10.5 19.8 47 46 A N S > S- 0 0 50 -2,-1.4 4,-2.4 1,-0.1 5,-0.3 -0.961 85.5-103.1-153.4 157.9 3.2 -10.7 22.1 48 47 A F H > S+ 0 0 99 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.905 116.2 47.4 -57.4 -50.1 6.9 -10.6 21.4 49 48 A N H > S+ 0 0 103 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.924 114.3 45.4 -59.4 -47.1 7.6 -14.3 21.8 50 49 A D H > S+ 0 0 35 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.870 114.5 48.0 -68.7 -34.2 4.7 -15.4 19.6 51 50 A V H X S+ 0 0 0 -4,-2.4 4,-2.7 2,-0.2 5,-0.3 0.938 111.5 49.8 -71.5 -45.2 5.4 -12.9 16.8 52 51 A T H X>S+ 0 0 21 -4,-2.7 4,-1.1 -5,-0.3 5,-1.0 0.900 113.1 46.1 -61.1 -39.3 9.1 -13.7 16.7 53 52 A T H <5S+ 0 0 80 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.798 116.7 44.4 -74.9 -29.1 8.5 -17.5 16.5 54 53 A R H <5S+ 0 0 98 -4,-1.4 -2,-0.2 -5,-0.2 -1,-0.2 0.885 122.7 34.3 -80.3 -41.2 5.8 -17.2 13.8 55 54 A L H <5S- 0 0 23 -4,-2.7 -2,-0.2 -5,-0.2 -3,-0.2 0.532 101.9-130.5 -90.7 -7.5 7.6 -14.6 11.6 56 55 A R T <5 + 0 0 216 -4,-1.1 2,-0.4 -5,-0.3 -3,-0.2 0.904 60.5 135.9 55.5 48.0 11.1 -16.1 12.3 57 56 A E < - 0 0 43 -5,-1.0 -1,-0.2 -6,-0.2 -2,-0.2 -0.990 45.6-155.9-123.0 134.9 12.5 -12.6 13.1 58 57 A N S S+ 0 0 154 -2,-0.4 2,-0.4 1,-0.2 -1,-0.1 0.822 79.8 33.2 -75.2 -42.2 14.8 -12.1 16.2 59 58 A E S S+ 0 0 158 -7,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.988 76.7 124.4-128.7 128.8 14.3 -8.4 16.7 60 59 A L - 0 0 12 -2,-0.4 2,-0.3 -28,-0.2 -28,-0.2 -0.982 43.6-130.5-167.0 166.0 11.1 -6.5 16.1 61 60 A T E -C 31 0B 50 -30,-1.9 -30,-2.2 -2,-0.3 2,-0.3 -0.927 30.0-169.6-123.4 157.1 8.4 -4.2 17.4 62 61 A Y E -C 30 0B 82 -2,-0.3 2,-0.3 -32,-0.2 -32,-0.2 -0.965 15.2-166.1-146.8 159.1 4.7 -4.9 16.9 63 62 A Y E -C 29 0B 82 -34,-2.2 -34,-2.4 -2,-0.3 2,-0.4 -0.981 6.5-166.7-146.2 135.3 1.2 -3.5 17.3 64 63 A d E +C 28 0B 22 -2,-0.3 2,-0.3 -36,-0.2 -36,-0.2 -0.955 14.7 159.8-123.3 151.5 -2.2 -5.1 17.2 65 64 A e E -C 27 0B 13 -38,-1.8 -38,-2.8 -2,-0.4 6,-0.1 -0.923 34.9-137.6-159.2 169.6 -5.7 -3.5 16.9 66 65 A K + 0 0 112 -2,-0.3 2,-0.3 -40,-0.2 -40,-0.0 -0.045 66.0 99.6-136.9 34.9 -9.3 -4.4 16.0 67 66 A K S > S- 0 0 142 -40,-0.1 3,-1.8 -65,-0.1 4,-0.2 -0.896 87.3 -77.0-114.9 152.3 -10.5 -1.5 13.8 68 67 A D T 3 S- 0 0 98 -2,-0.3 -64,-0.2 1,-0.3 -2,-0.1 -0.191 110.4 -9.5 -56.5 129.8 -10.7 -1.7 10.0 69 68 A L T 3 S+ 0 0 47 -66,-3.3 -1,-0.3 -51,-0.2 -65,-0.2 0.762 90.1 139.4 58.0 32.5 -7.3 -1.2 8.3 70 69 A e < + 0 0 9 -3,-1.8 2,-1.6 -67,-0.4 -2,-0.1 0.607 42.5 87.4 -84.8 -12.2 -5.7 -0.2 11.6 71 70 A N + 0 0 0 -4,-0.2 2,-0.2 -43,-0.1 -1,-0.2 -0.460 63.3 143.0 -88.6 64.1 -2.5 -2.1 11.1 72 71 A F > - 0 0 77 -2,-1.6 3,-2.0 -43,-0.1 4,-0.3 -0.692 62.8-104.5-107.4 161.7 -0.7 0.8 9.3 73 72 A N G > S+ 0 0 48 1,-0.3 3,-2.0 -2,-0.2 -1,-0.1 0.826 112.3 59.8 -52.1 -46.9 2.9 1.9 9.4 74 73 A E G 3 S+ 0 0 149 1,-0.3 -1,-0.3 3,-0.0 -3,-0.0 0.546 87.5 75.9 -70.5 -6.8 2.5 5.1 11.5 75 74 A Q G < S+ 0 0 60 -3,-2.0 2,-0.6 1,-0.2 -1,-0.3 0.681 91.1 62.8 -69.3 -21.7 1.1 3.1 14.4 76 75 A L < - 0 0 19 -3,-2.0 -1,-0.2 -4,-0.3 -13,-0.1 -0.920 58.9-171.6-118.3 110.7 4.6 1.9 15.3 77 76 A E 0 0 196 -2,-0.6 -1,-0.2 -3,-0.0 -2,-0.0 0.925 360.0 360.0 -64.5 -45.2 7.2 4.4 16.2 78 77 A N 0 0 113 -16,-0.1 -2,-0.1 -47,-0.0 -17,-0.0 0.978 360.0 360.0 57.8 360.0 9.9 1.7 16.1