==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 29-MAY-01 1J9V . COMPND 2 MOLECULE: DABD (ACE)IWG(DAB)SGKLIDTTA ANALOGUE OF HIV GP41; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1288.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 7 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 73 0, 0.0 12,-2.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 120.3 -4.6 2.4 -1.6 2 3 A W - 0 0 192 10,-0.2 2,-1.0 11,-0.0 10,-0.2 -0.890 360.0 -29.4-137.0 102.1 -4.1 0.8 -5.1 3 4 A G S S- 0 0 41 -2,-0.4 2,-0.3 2,-0.1 9,-0.0 -0.766 126.6 -15.4 95.1 -91.6 -0.8 -1.0 -5.8 4 5 A X - 0 0 61 -2,-1.0 2,-0.7 6,-0.2 6,-0.2 -0.917 52.0-165.3-152.0 121.7 1.7 0.9 -3.5 5 6 A S S S- 0 0 61 4,-1.9 2,-0.8 -2,-0.3 4,-0.4 -0.784 79.2 -35.9-109.4 84.6 1.2 4.3 -1.8 6 7 A G S S- 0 0 79 -2,-0.7 4,-0.0 1,-0.2 -2,-0.0 -0.795 104.3 -62.2 106.8 -90.3 4.8 5.3 -0.6 7 8 A K S S+ 0 0 178 -2,-0.8 -1,-0.2 2,-0.0 -2,-0.0 0.221 121.1 41.5-157.2 -67.5 6.6 2.2 0.5 8 9 A L S S+ 0 0 163 1,-0.1 2,-1.0 -3,-0.1 -2,-0.1 0.810 98.9 72.8 -68.3 -34.5 5.2 0.1 3.5 9 10 A I + 0 0 72 -4,-0.4 -4,-1.9 1,-0.0 2,-0.4 -0.732 55.9 156.1 -88.8 97.5 1.4 0.3 2.7 10 11 A D + 0 0 99 -2,-1.0 2,-0.3 -6,-0.2 -6,-0.2 -0.784 21.6 123.4-125.3 83.5 1.0 -2.1 -0.3 11 12 A T - 0 0 70 -2,-0.4 2,-1.4 2,-0.1 -6,-0.0 -0.996 59.8-128.5-144.9 138.9 -2.7 -3.4 -0.5 12 13 A T 0 0 108 -2,-0.3 -10,-0.2 -10,-0.2 -2,-0.0 -0.624 360.0 360.0 -90.0 80.6 -5.4 -3.2 -3.3 13 14 A A 0 0 91 -12,-2.0 -2,-0.1 -2,-1.4 -11,-0.0 -0.820 360.0 360.0-159.3 360.0 -8.3 -1.7 -1.2