==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 16-NOV-06 2J9V . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR D.J.GILL,H.L.TEO,J.SUN,O.PERISIC,D.B.VEPRINTSEV,S.D.EMR, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6334.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 76.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 62 62.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 144 A H 0 0 181 0, 0.0 2,-0.2 0, 0.0 98,-0.0 0.000 360.0 360.0 360.0 169.8 -7.5 -6.3 11.1 2 145 A H - 0 0 145 2,-0.0 2,-0.6 1,-0.0 0, 0.0 -0.498 360.0-147.9 -73.8 140.0 -3.7 -6.4 10.3 3 146 A H - 0 0 119 -2,-0.2 4,-0.1 1,-0.1 95,-0.1 -0.971 10.9-171.5-115.3 115.4 -1.9 -3.0 10.4 4 147 A M + 0 0 116 -2,-0.6 2,-0.3 2,-0.1 -1,-0.1 0.700 58.5 70.2 -85.3 -18.0 1.0 -3.0 7.9 5 148 A F S S- 0 0 36 94,-0.3 2,-0.4 1,-0.0 43,-0.1 -0.757 84.1-109.2-107.4 145.8 2.7 0.3 8.9 6 149 A N > - 0 0 76 -2,-0.3 4,-2.2 42,-0.2 5,-0.2 -0.555 24.8-147.9 -65.4 122.1 4.7 1.4 11.9 7 150 A A H > S+ 0 0 75 -2,-0.4 4,-2.3 1,-0.2 -1,-0.1 0.803 95.3 55.8 -74.6 -26.4 2.5 3.9 13.8 8 151 A K H > S+ 0 0 168 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.923 109.0 48.4 -67.5 -44.9 5.4 6.0 15.1 9 152 A Y H > S+ 0 0 87 1,-0.2 4,-2.4 2,-0.2 39,-0.2 0.880 112.4 48.8 -59.6 -44.4 6.6 6.5 11.5 10 153 A V H X S+ 0 0 28 -4,-2.2 4,-2.7 2,-0.2 -2,-0.2 0.912 108.2 53.0 -65.5 -37.9 3.1 7.5 10.5 11 154 A A H X S+ 0 0 64 -4,-2.3 4,-2.1 1,-0.2 -2,-0.2 0.918 112.6 46.0 -62.7 -42.4 2.8 9.9 13.4 12 155 A E H X S+ 0 0 99 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.898 112.5 48.1 -62.5 -46.7 6.0 11.5 12.3 13 156 A A H X S+ 0 0 0 -4,-2.4 4,-2.0 31,-0.3 -2,-0.2 0.902 112.4 50.9 -57.7 -43.9 5.1 11.7 8.6 14 157 A T H X S+ 0 0 29 -4,-2.7 4,-2.0 1,-0.2 -2,-0.2 0.920 110.1 49.0 -60.4 -46.6 1.7 13.1 9.6 15 158 A G H X S+ 0 0 31 -4,-2.1 4,-3.0 1,-0.2 -2,-0.2 0.888 110.1 51.9 -61.4 -38.9 3.4 15.8 11.8 16 159 A N H X S+ 0 0 33 -4,-2.4 4,-1.9 2,-0.2 -1,-0.2 0.845 106.4 53.9 -69.8 -32.0 5.8 16.7 8.9 17 160 A F H X S+ 0 0 0 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.959 113.5 41.6 -62.7 -51.6 2.9 17.1 6.5 18 161 A I H X S+ 0 0 84 -4,-2.0 4,-3.1 1,-0.2 5,-0.2 0.891 110.3 58.7 -66.5 -41.0 1.2 19.5 8.8 19 162 A T H X S+ 0 0 69 -4,-3.0 4,-2.5 2,-0.2 -1,-0.2 0.923 108.7 43.5 -48.1 -50.9 4.4 21.3 9.7 20 163 A V H X S+ 0 0 2 -4,-1.9 4,-2.4 1,-0.2 -1,-0.2 0.894 112.7 53.6 -71.8 -38.4 5.2 22.2 6.0 21 164 A M H X S+ 0 0 23 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.941 111.0 45.3 -57.3 -52.1 1.6 23.2 5.5 22 165 A D H X S+ 0 0 84 -4,-3.1 4,-1.7 2,-0.2 -2,-0.2 0.886 110.2 54.3 -55.7 -44.7 1.7 25.6 8.6 23 166 A A H <>S+ 0 0 8 -4,-2.5 5,-2.1 -5,-0.2 3,-0.4 0.926 107.0 52.3 -56.4 -44.6 5.1 27.0 7.4 24 167 A L H ><5S+ 0 0 3 -4,-2.4 3,-1.2 1,-0.2 -1,-0.2 0.894 109.6 48.8 -55.7 -44.3 3.5 27.7 4.1 25 168 A K H 3<5S+ 0 0 135 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.731 105.6 56.8 -67.3 -28.2 0.7 29.6 5.9 26 169 A L T 3<5S- 0 0 130 -4,-1.7 -1,-0.3 -3,-0.4 -2,-0.2 0.146 125.4-105.2 -87.8 16.0 3.2 31.6 8.0 27 170 A N T < 5 + 0 0 94 -3,-1.2 2,-0.6 1,-0.2 -3,-0.2 0.856 59.3 164.1 55.1 46.4 4.7 32.7 4.7 28 171 A Y < + 0 0 98 -5,-2.1 -1,-0.2 -8,-0.1 -2,-0.1 -0.829 11.2 150.9 -79.4 122.5 7.8 30.6 4.5 29 172 A N + 0 0 40 -2,-0.6 46,-3.3 44,-0.0 2,-0.3 0.373 31.7 92.6-138.8 3.0 8.6 31.0 0.8 30 173 A A B >> S-A 74 0A 8 44,-0.2 4,-2.8 1,-0.1 3,-1.3 -0.721 77.7-114.8-107.8 153.7 12.4 30.7 0.4 31 174 A K H 3> S+ 0 0 71 42,-0.7 4,-2.4 39,-0.3 -1,-0.1 0.891 116.4 54.3 -48.5 -44.0 14.7 27.7 -0.4 32 175 A D H 34 S+ 0 0 115 1,-0.2 -1,-0.3 2,-0.2 39,-0.0 0.747 116.7 37.7 -68.1 -24.9 16.4 28.0 3.0 33 176 A Q H <> S+ 0 0 52 -3,-1.3 4,-0.5 2,-0.1 -2,-0.2 0.864 125.2 34.5 -86.5 -42.5 13.0 27.8 4.7 34 177 A L H X S+ 0 0 2 -4,-2.8 4,-2.5 1,-0.2 5,-0.2 0.788 105.9 64.6 -95.0 -30.3 11.2 25.3 2.6 35 178 A H H X S+ 0 0 57 -4,-2.4 4,-2.2 -5,-0.4 -1,-0.2 0.861 102.3 45.9 -65.7 -45.4 13.8 22.9 1.5 36 179 A P H > S+ 0 0 69 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.853 115.6 51.2 -65.8 -28.2 14.8 21.4 4.9 37 180 A L H X S+ 0 0 44 -4,-0.5 4,-1.8 2,-0.2 -2,-0.2 0.914 112.7 41.4 -72.4 -50.7 11.1 21.0 5.6 38 181 A L H X S+ 0 0 3 -4,-2.5 4,-2.7 2,-0.2 -1,-0.2 0.881 113.5 55.9 -60.9 -43.4 10.1 19.2 2.3 39 182 A A H X S+ 0 0 33 -4,-2.2 4,-2.0 -5,-0.2 -2,-0.2 0.907 109.4 44.0 -60.3 -45.2 13.3 17.1 2.6 40 183 A E H X S+ 0 0 84 -4,-1.8 4,-2.6 2,-0.2 -1,-0.2 0.851 111.2 56.3 -67.8 -37.6 12.4 15.8 6.1 41 184 A L H X S+ 0 0 2 -4,-1.8 4,-2.9 2,-0.2 5,-0.2 0.983 109.3 45.6 -54.7 -51.3 8.8 15.3 5.0 42 185 A L H X S+ 0 0 39 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.888 112.3 49.8 -64.8 -40.5 10.0 13.1 2.1 43 186 A I H X S+ 0 0 93 -4,-2.0 4,-1.1 2,-0.2 -1,-0.2 0.923 113.1 48.5 -58.9 -42.8 12.4 11.1 4.4 44 187 A S H X S+ 0 0 0 -4,-2.6 4,-1.4 1,-0.2 -31,-0.3 0.900 110.5 49.1 -66.7 -45.2 9.5 10.6 6.9 45 188 A I H X S+ 0 0 0 -4,-2.9 4,-2.2 1,-0.2 3,-0.5 0.933 109.9 52.5 -55.6 -46.5 7.0 9.4 4.2 46 189 A N H < S+ 0 0 74 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.765 101.7 60.3 -67.4 -24.8 9.6 7.0 2.8 47 190 A R H < S+ 0 0 89 -4,-1.1 -1,-0.3 -3,-0.3 -2,-0.2 0.882 110.0 42.8 -72.1 -36.2 10.1 5.5 6.3 48 191 A V H < S- 0 0 13 -4,-1.4 2,-0.3 -3,-0.5 -2,-0.2 0.939 134.6 -17.9 -69.8 -49.0 6.4 4.6 6.3 49 192 A T < - 0 0 11 -4,-2.2 -1,-0.3 2,-0.1 -2,-0.1 -0.968 39.3-149.9-158.0 141.7 6.1 3.2 2.7 50 193 A R + 0 0 208 -2,-0.3 -4,-0.1 -3,-0.1 -3,-0.1 0.410 59.2 130.6 -90.9 2.3 8.1 3.4 -0.5 51 194 A D - 0 0 90 1,-0.1 2,-1.9 -5,-0.1 -2,-0.1 -0.304 65.1-128.9 -58.0 134.0 4.9 3.1 -2.5 52 195 A D - 0 0 124 4,-0.0 -1,-0.1 3,-0.0 3,-0.1 -0.499 41.5-177.4 -84.7 69.2 4.6 5.7 -5.2 53 196 A F > - 0 0 14 -2,-1.9 3,-1.9 1,-0.2 4,-0.4 -0.107 39.6 -65.1 -67.1 162.8 1.1 6.8 -4.1 54 197 A E T 3 S+ 0 0 146 1,-0.2 39,-0.2 39,-0.2 -1,-0.2 -0.244 120.0 7.7 -55.2 134.2 -0.9 9.4 -5.9 55 198 A N T 3> S+ 0 0 30 -3,-0.1 4,-0.8 38,-0.1 -1,-0.2 0.303 92.9 111.3 81.9 -7.3 0.6 12.9 -5.8 56 199 A R H <> S+ 0 0 17 -3,-1.9 4,-1.2 1,-0.2 3,-0.3 0.827 74.4 56.9 -59.8 -38.7 3.9 11.8 -4.1 57 200 A S H > S+ 0 0 53 -4,-0.4 4,-2.3 1,-0.2 -1,-0.2 0.841 97.8 61.5 -63.4 -37.2 5.8 12.6 -7.4 58 201 A K H > S+ 0 0 98 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.878 100.2 55.8 -52.7 -39.1 4.5 16.2 -7.3 59 202 A L H X S+ 0 0 4 -4,-0.8 4,-2.3 -3,-0.3 -1,-0.2 0.909 107.5 46.9 -64.6 -43.7 6.4 16.5 -3.9 60 203 A I H X S+ 0 0 71 -4,-1.2 4,-2.3 2,-0.2 -1,-0.2 0.911 109.9 55.1 -60.0 -43.8 9.6 15.5 -5.6 61 204 A D H X S+ 0 0 82 -4,-2.3 4,-2.2 1,-0.2 -2,-0.2 0.884 109.8 46.2 -54.7 -46.0 8.8 17.9 -8.4 62 205 A W H X S+ 0 0 21 -4,-2.6 4,-3.4 2,-0.2 5,-0.3 0.893 109.3 54.0 -67.1 -43.7 8.5 20.8 -5.8 63 206 A I H X S+ 0 0 28 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.879 111.6 45.4 -53.3 -45.8 11.7 19.8 -4.0 64 207 A V H X S+ 0 0 69 -4,-2.3 4,-0.6 2,-0.2 -2,-0.2 0.914 115.7 47.6 -68.1 -41.7 13.6 19.9 -7.3 65 208 A R H >X S+ 0 0 136 -4,-2.2 3,-1.4 2,-0.2 4,-0.6 0.953 113.6 45.4 -58.4 -55.6 12.0 23.3 -8.2 66 209 A I H >< S+ 0 0 0 -4,-3.4 3,-1.3 1,-0.3 -2,-0.2 0.888 107.6 59.9 -60.4 -38.6 12.6 24.8 -4.8 67 210 A N H 3< S+ 0 0 76 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.710 98.9 59.1 -59.9 -22.0 16.2 23.5 -4.9 68 211 A K H << S+ 0 0 173 -3,-1.4 -1,-0.3 -4,-0.6 -2,-0.2 0.677 81.3 112.1 -86.6 -17.3 16.8 25.6 -8.1 69 212 A L << - 0 0 27 -3,-1.3 2,-0.2 -4,-0.6 3,-0.1 -0.250 67.8-125.4 -54.9 138.6 16.0 28.9 -6.4 70 213 A S > - 0 0 79 1,-0.1 3,-1.7 4,-0.1 -39,-0.3 -0.511 44.2 -81.6 -75.3 153.3 18.8 31.4 -5.9 71 214 A I T 3 S+ 0 0 167 1,-0.3 -1,-0.1 -2,-0.2 3,-0.1 -0.370 124.1 17.7 -58.9 129.0 19.4 32.7 -2.4 72 215 A G T 3 S+ 0 0 69 1,-0.4 -1,-0.3 -3,-0.1 2,-0.2 0.097 97.7 118.4 90.2 -27.2 16.8 35.4 -1.8 73 216 A D < - 0 0 82 -3,-1.7 -42,-0.7 1,-0.0 -1,-0.4 -0.544 50.4-166.1 -59.8 134.1 14.8 34.1 -4.7 74 217 A T B -A 30 0A 61 -2,-0.2 2,-0.3 -44,-0.2 -44,-0.2 -0.795 25.8 -96.2-120.6 165.8 11.4 33.1 -3.3 75 218 A L - 0 0 4 -46,-3.3 2,-0.1 -2,-0.3 -9,-0.0 -0.632 50.2-110.1 -73.0 143.4 8.3 31.1 -4.4 76 219 A T > - 0 0 70 -2,-0.3 4,-2.4 1,-0.1 5,-0.2 -0.394 24.9-108.5 -73.7 155.0 5.6 33.3 -5.7 77 220 A E H > S+ 0 0 127 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.868 122.6 47.0 -49.2 -40.4 2.4 33.8 -3.8 78 221 A T H > S+ 0 0 64 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.870 108.7 52.8 -77.2 -34.8 0.5 31.7 -6.4 79 222 A Q H > S+ 0 0 37 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.823 105.7 57.0 -62.4 -34.6 3.2 28.9 -6.4 80 223 A I H X S+ 0 0 16 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.903 107.3 47.2 -63.0 -42.4 2.7 28.8 -2.6 81 224 A R H X S+ 0 0 153 -4,-1.3 4,-1.8 2,-0.2 -2,-0.2 0.844 111.5 51.0 -67.5 -36.8 -1.0 28.2 -3.1 82 225 A E H X S+ 0 0 106 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.919 110.8 48.5 -64.1 -45.8 -0.2 25.5 -5.7 83 226 A L H X S+ 0 0 1 -4,-2.7 4,-1.9 1,-0.2 -2,-0.2 0.907 110.4 50.5 -60.6 -46.7 2.3 23.8 -3.3 84 227 A L H X S+ 0 0 35 -4,-2.3 4,-1.7 1,-0.2 -1,-0.2 0.873 111.0 50.2 -61.8 -37.8 -0.2 23.8 -0.4 85 228 A F H X S+ 0 0 116 -4,-1.8 4,-2.0 1,-0.2 -2,-0.2 0.929 110.2 48.2 -68.0 -43.9 -2.8 22.3 -2.7 86 229 A D H X S+ 0 0 31 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.830 109.6 54.3 -62.6 -32.2 -0.4 19.5 -3.9 87 230 A L H X S+ 0 0 0 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.826 107.4 50.1 -74.0 -37.9 0.5 18.8 -0.2 88 231 A E H X S+ 0 0 75 -4,-1.7 4,-2.9 2,-0.2 -2,-0.2 0.946 112.3 46.5 -62.3 -49.0 -3.1 18.3 0.8 89 232 A L H X S+ 0 0 44 -4,-2.0 4,-2.2 1,-0.2 -2,-0.2 0.912 113.5 49.1 -60.1 -43.6 -3.7 15.9 -2.1 90 233 A A H X S+ 0 0 0 -4,-2.2 4,-2.1 -35,-0.2 -1,-0.2 0.897 111.2 51.1 -63.6 -36.6 -0.5 14.0 -1.2 91 234 A Y H X S+ 0 0 63 -4,-2.0 4,-3.2 2,-0.2 -2,-0.2 0.934 109.4 49.7 -63.5 -46.5 -1.7 13.9 2.4 92 235 A K H X S+ 0 0 126 -4,-2.9 4,-2.1 1,-0.2 -2,-0.2 0.882 112.0 46.6 -60.7 -41.6 -5.0 12.5 1.4 93 236 A S H X S+ 0 0 19 -4,-2.2 4,-0.7 -39,-0.2 -1,-0.2 0.820 113.7 50.0 -68.8 -37.8 -3.5 9.8 -0.8 94 237 A F H >X S+ 0 0 0 -4,-2.1 3,-1.7 -5,-0.2 4,-0.9 0.969 110.4 49.8 -55.8 -57.1 -1.0 8.9 2.0 95 238 A Y H >< S+ 0 0 151 -4,-3.2 3,-1.4 1,-0.3 -2,-0.2 0.905 105.5 57.6 -54.3 -44.8 -3.8 8.7 4.5 96 239 A A H 3< S+ 0 0 77 -4,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.744 101.0 57.0 -60.1 -26.6 -5.8 6.5 2.1 97 240 A L H << S+ 0 0 54 -3,-1.7 -1,-0.3 -4,-0.7 -2,-0.2 0.784 89.4 100.3 -71.1 -24.8 -2.9 3.9 2.1 98 241 A L << 0 0 47 -3,-1.4 -95,-0.0 -4,-0.9 -3,-0.0 -0.253 360.0 360.0 -74.0 146.5 -3.0 3.6 5.9 99 242 A D 0 0 77 -94,-0.0 -94,-0.3 -98,-0.0 -96,-0.1 -0.872 360.0 360.0-148.2 360.0 -4.7 0.7 7.7