==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 29-MAY-01 1JA3 . COMPND 2 MOLECULE: MHC CLASS I RECOGNITION RECEPTOR LY49I; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR N.DIMASI,W.M.SAWICKI,L.A.REINECK,Y.LI,K.NATARAJAN, . 228 5 8 4 4 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 13134.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 131 57.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 1.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 62 27.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 4 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 1 3 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 140 A V 0 0 117 0, 0.0 15,-4.0 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 118.2 20.7 4.6 -27.0 2 141 A K E +A 15 0A 89 13,-0.2 2,-0.2 14,-0.1 13,-0.2 -0.684 360.0 157.9-142.4 84.2 20.6 2.5 -23.9 3 142 A Y E -A 14 0A 83 11,-1.2 11,-3.7 -2,-0.3 2,-0.3 -0.664 23.3-145.8-103.6 159.5 24.0 1.9 -22.3 4 143 A W E +A 13 0A 50 9,-0.3 2,-0.3 -2,-0.2 9,-0.2 -0.894 14.5 179.3-129.1 158.8 24.8 0.9 -18.7 5 144 A F E -A 12 0A 57 7,-1.2 7,-4.3 -2,-0.3 2,-0.4 -0.951 17.5-138.4-148.5 166.2 27.4 1.5 -16.1 6 145 A a E +A 11 0A 0 119,-0.5 119,-0.5 -2,-0.3 2,-0.4 -0.991 16.5 176.2-135.8 125.4 28.3 0.6 -12.5 7 146 A Y E > -A 10 0A 74 3,-2.4 3,-1.2 -2,-0.4 2,-0.3 -0.979 66.4 -30.3-130.5 118.3 29.7 2.9 -9.8 8 147 A G B 3 S-D 123 0B 7 115,-2.4 115,-1.1 -2,-0.4 -2,-0.0 -0.626 124.2 -28.0 77.7-132.6 30.1 1.6 -6.3 9 148 A T T 3 S+ 0 0 45 -2,-0.3 103,-0.4 113,-0.1 2,-0.4 0.361 124.8 84.4 -97.6 2.6 27.5 -1.1 -5.4 10 149 A K E < -A 7 0A 9 -3,-1.2 -3,-2.4 101,-0.2 2,-0.4 -0.872 59.7-160.6-111.3 140.6 25.0 0.4 -7.8 11 150 A a E -AB 6 110A 0 99,-1.1 99,-1.7 -2,-0.4 -5,-0.3 -0.913 15.0-163.9-113.2 143.4 24.7 -0.2 -11.5 12 151 A Y E -AB 5 109A 3 -7,-4.3 -7,-1.2 -2,-0.4 2,-0.4 -0.645 14.0-147.0-120.5 178.1 22.8 2.3 -13.7 13 152 A Y E -AB 4 108A 37 95,-2.2 95,-1.4 -9,-0.2 2,-0.7 -0.980 9.7-154.3-145.2 128.9 21.3 2.4 -17.1 14 153 A F E -AB 3 107A 0 -11,-3.7 -11,-1.2 -2,-0.4 2,-0.5 -0.897 9.8-160.9-114.6 107.6 21.2 5.6 -19.2 15 154 A I E -AB 2 106A 0 91,-1.7 91,-1.4 -2,-0.7 2,-0.7 -0.735 6.4-159.0 -88.0 131.0 18.4 5.6 -21.7 16 155 A M E + 0 0 38 -15,-4.0 2,-0.3 -2,-0.5 89,-0.1 -0.631 55.0 111.9-107.9 69.4 18.8 8.1 -24.5 17 156 A N E - 0 0 78 -2,-0.7 2,-0.9 87,-0.2 87,-0.2 -0.758 65.6-137.3-143.0 86.6 15.2 8.4 -25.6 18 157 A K E + 0 0 94 -2,-0.3 87,-0.3 85,-0.2 2,-0.2 -0.293 50.2 138.6 -53.1 92.7 13.9 11.9 -24.7 19 158 A T E - B 0 104A 47 85,-2.9 85,-3.3 -2,-0.9 4,-0.1 -0.736 57.9 -65.9-129.8 178.1 10.4 11.2 -23.3 20 159 A T > - 0 0 52 -2,-0.2 3,-3.1 83,-0.2 4,-0.3 -0.401 51.7-109.2 -68.2 140.9 8.1 12.2 -20.5 21 160 A W T >> S+ 0 0 25 79,-2.4 3,-1.9 1,-0.3 4,-1.0 0.824 123.4 64.7 -36.3 -44.7 9.3 11.4 -17.0 22 161 A S H 3> S+ 0 0 54 78,-0.4 4,-1.0 1,-0.3 -1,-0.3 0.372 88.4 78.6 -64.5 9.1 6.5 8.8 -16.9 23 162 A G H <> S+ 0 0 10 -3,-3.1 4,-3.4 77,-0.2 -1,-0.3 0.833 87.0 49.2 -86.5 -40.7 8.7 7.4 -19.6 24 163 A b H <>>S+ 0 0 0 -3,-1.9 4,-1.6 -4,-0.3 5,-0.9 0.979 101.8 64.2 -62.3 -52.8 11.4 5.9 -17.3 25 164 A K H X5S+ 0 0 109 -4,-1.0 4,-2.0 1,-0.2 5,-0.4 0.865 114.4 34.0 -27.2 -65.9 8.5 4.3 -15.4 26 165 A A H X5S+ 0 0 46 -4,-1.0 4,-2.5 3,-0.2 -2,-0.2 0.934 124.9 41.4 -56.7 -59.7 7.9 2.4 -18.7 27 166 A N H X5S+ 0 0 22 -4,-3.4 4,-1.5 2,-0.2 -3,-0.2 0.976 119.0 41.4 -57.0 -63.9 11.5 2.1 -19.9 28 167 A c H ><>S+ 0 0 1 -4,-1.6 5,-2.1 2,-0.3 3,-1.2 0.942 117.8 46.7 -52.8 -53.9 13.3 1.2 -16.6 29 168 A Q H >< - 0 0 43 1,-0.1 4,-5.0 35,-0.0 3,-0.3 -0.972 66.2 -77.6 176.0 171.7 23.7 11.1 -2.1 41 180 A E H > S+ 0 0 111 2,-0.3 4,-3.0 -2,-0.3 5,-0.5 0.819 118.2 58.1 -52.8 -53.9 26.3 13.6 -3.5 42 181 A D H > S+ 0 0 121 2,-0.2 4,-1.5 1,-0.2 -1,-0.3 0.962 121.8 30.8 -44.5 -52.5 29.1 11.0 -3.9 43 182 A E H > S+ 0 0 15 -3,-0.3 4,-1.9 2,-0.2 -2,-0.3 0.971 118.7 55.0 -70.0 -56.8 26.7 9.2 -6.1 44 183 A L H >X S+ 0 0 36 -4,-5.0 4,-2.3 1,-0.2 3,-1.1 0.929 108.8 47.0 -42.4 -64.4 24.8 12.3 -7.4 45 184 A K H 3X S+ 0 0 114 -4,-3.0 4,-3.0 1,-0.3 5,-0.4 0.939 106.6 58.7 -45.5 -56.0 27.9 14.0 -8.6 46 185 A F H 3X S+ 0 0 10 -4,-1.5 4,-2.5 -5,-0.5 5,-0.3 0.834 108.8 46.5 -41.2 -42.9 29.1 10.8 -10.3 47 186 A L H - E 0 127B 48 3,-2.7 3,-2.2 -2,-0.4 -117,-0.2 -0.970 65.4 -22.1-146.8 140.3 33.4 0.8 -12.0 125 147 B G T 3 S- 0 0 9 -119,-0.5 -119,-0.5 -2,-0.3 -120,-0.0 -0.182 126.2 -28.6 51.3-147.1 32.4 0.6 -15.6 126 148 B T T 3 S+ 0 0 45 -121,-0.1 103,-1.5 -3,-0.1 2,-0.3 0.192 125.0 74.6 -87.4 19.3 31.3 -2.9 -16.5 127 149 B K E < -EF 124 228B 13 -3,-2.2 -3,-2.7 -121,-0.2 2,-0.3 -0.943 61.5-151.0-132.5 154.3 33.5 -4.6 -13.9 128 150 B e E -EF 123 227B 0 99,-1.9 99,-1.1 -2,-0.3 2,-0.3 -0.854 15.9-150.0-118.9 155.8 33.5 -5.1 -10.2 129 151 B Y E -EF 122 226B 5 -7,-4.2 -7,-2.3 -2,-0.3 2,-0.5 -0.886 11.2-149.8-128.9 158.5 36.5 -5.5 -8.0 130 152 B Y E -EF 121 225B 37 95,-1.6 95,-2.7 -2,-0.3 2,-1.1 -0.946 11.6-163.8-128.1 105.1 37.5 -7.2 -4.8 131 153 B F E -E 120 0B 0 -11,-1.7 -11,-0.8 -2,-0.5 2,-0.3 -0.754 7.8-164.1 -94.8 94.6 40.1 -5.4 -2.8 132 154 B I E -E 119 0B 0 -2,-1.1 91,-1.0 -13,-0.2 2,-0.4 -0.594 6.0-159.6 -74.0 137.7 41.4 -7.9 -0.3 133 155 B M + 0 0 41 -15,-2.9 89,-0.1 -2,-0.3 2,-0.1 -0.616 54.8 112.6-118.9 68.4 43.4 -6.1 2.5 134 156 B N - 0 0 81 -2,-0.4 87,-0.3 87,-0.2 2,-0.2 -0.553 66.2-137.6-140.1 68.9 45.4 -9.1 3.7 135 157 B K + 0 0 93 85,-0.2 87,-0.3 -2,-0.1 2,-0.2 0.002 47.8 143.4 -34.2 87.8 49.1 -8.5 2.8 136 158 B T B -L 221 0D 46 85,-2.7 85,-3.0 -2,-0.2 4,-0.1 -0.751 58.2 -70.4-125.4 171.7 50.1 -12.0 1.6 137 159 B T > - 0 0 57 83,-0.3 3,-3.2 -2,-0.2 81,-0.2 -0.396 56.9-102.0 -65.4 139.0 52.4 -13.4 -1.1 138 160 B W T >> S+ 0 0 12 79,-0.8 3,-2.9 81,-0.5 4,-0.5 0.773 123.5 66.9 -23.1 -56.6 51.1 -12.8 -4.6 139 161 B S H 3> S+ 0 0 68 78,-0.6 4,-1.2 1,-0.3 -1,-0.3 0.467 86.8 77.9 -53.0 2.2 50.0 -16.4 -4.8 140 162 B G H <> S+ 0 0 10 -3,-3.2 4,-2.8 77,-0.2 -1,-0.3 0.828 86.2 53.6 -82.6 -37.0 47.6 -15.2 -2.1 141 163 B f H <> S+ 0 0 0 -3,-2.9 4,-1.7 -4,-0.2 5,-0.4 0.998 106.8 49.3 -59.0 -69.6 45.2 -13.5 -4.5 142 164 B K H X>S+ 0 0 81 -4,-0.5 4,-3.6 1,-0.3 5,-0.7 0.878 112.9 50.0 -32.2 -64.9 44.6 -16.5 -6.6 143 165 B A H X5S+ 0 0 42 -4,-1.2 4,-2.0 2,-0.2 -1,-0.3 0.897 122.5 31.2 -39.8 -62.4 44.0 -18.5 -3.4 144 166 B N H X5S+ 0 0 32 -4,-2.8 4,-3.7 2,-0.2 3,-0.4 0.998 125.8 42.9 -59.6 -74.9 41.5 -15.9 -2.1 145 167 B g H <>S+ 0 0 0 -4,-1.7 5,-2.2 1,-0.3 -3,-0.2 0.873 114.9 48.9 -37.6 -61.7 40.1 -14.7 -5.4 146 168 B Q H ><5S+ 0 0 136 -4,-3.6 3,-1.2 -5,-0.4 -1,-0.3 0.924 116.9 45.4 -48.3 -45.7 39.9 -18.2 -6.9 147 169 B H H 3< S- 0 0 45 1,-0.1 4,-3.0 36,-0.1 3,-0.2 -0.992 70.7-100.5-169.0 164.0 43.0 -0.5 -20.2 158 180 B E H > S+ 0 0 131 36,-0.3 4,-2.5 -2,-0.3 5,-0.4 0.942 117.3 59.3 -55.8 -51.9 44.2 2.9 -19.3 159 181 B D H > S+ 0 0 112 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.875 117.2 34.8 -43.8 -46.3 40.7 4.0 -18.2 160 182 B E H >> S+ 0 0 5 -3,-0.2 4,-1.8 2,-0.2 3,-0.6 0.986 110.8 58.1 -73.9 -67.9 40.8 1.2 -15.7 161 183 B L H 3X S+ 0 0 35 -4,-3.0 4,-1.8 1,-0.3 3,-0.4 0.843 112.2 43.4 -29.0 -60.0 44.4 1.0 -14.6 162 184 B K H 3X S+ 0 0 123 -4,-2.5 4,-3.3 1,-0.2 5,-0.4 0.924 106.5 62.4 -59.7 -41.8 44.2 4.6 -13.5 163 185 B F H