==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-MAY-01 1JAA . COMPND 2 MOLECULE: DAPE : (ACE)IWG(DAP)SGKLIETTA ANALOGUE OF HIV . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1450.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 153 0, 0.0 2,-0.3 0, 0.0 10,-0.1 0.000 360.0 360.0 360.0 95.5 5.2 3.9 1.0 2 3 A W 0 0 164 11,-0.1 10,-0.1 0, 0.0 7,-0.1 -0.738 360.0 360.0-129.3 81.0 6.5 5.4 4.4 3 4 A G 0 0 103 -2,-0.3 0, 0.0 10,-0.1 0, 0.0 0.843 360.0 360.0 48.9 360.0 8.1 2.4 6.4 4 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 5 6 A S 0 0 153 0, 0.0 2,-0.9 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 149.2 4.6 -3.6 5.2 6 7 A G + 0 0 68 2,-0.0 2,-1.0 0, 0.0 0, 0.0 -0.562 360.0 61.5 98.6 -68.1 1.2 -5.2 4.5 7 8 A K S S- 0 0 159 -2,-0.9 2,-1.6 1,-0.1 0, 0.0 -0.785 70.6-169.4 -94.1 91.9 -0.9 -1.9 4.2 8 9 A L + 0 0 129 -2,-1.0 2,-0.1 1,-0.1 -1,-0.1 -0.428 61.7 86.5 -84.5 64.1 0.8 -0.2 1.2 9 10 A I + 0 0 126 -2,-1.6 2,-0.3 -7,-0.1 -1,-0.1 -0.592 46.6 135.0-161.5 81.6 -1.0 3.2 1.6 10 11 A E + 0 0 55 1,-0.1 -7,-0.0 -2,-0.1 -2,-0.0 -0.862 21.2 174.3-138.9 97.5 1.1 5.4 4.1 11 12 A T S S- 0 0 119 -2,-0.3 -1,-0.1 2,-0.2 0, 0.0 0.866 85.6 -13.2 -74.7 -39.1 1.7 9.1 3.0 12 13 A T 0 0 112 1,-0.3 -2,-0.1 -10,-0.1 0, 0.0 0.568 360.0 360.0-125.6 -66.5 3.5 10.3 6.4 13 14 A A 0 0 109 0, 0.0 -1,-0.3 0, 0.0 -2,-0.2 -0.782 360.0 360.0 -93.7 360.0 3.1 7.6 9.2