==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 31-MAY-01 1JAR . COMPND 2 MOLECULE: DDAB: (ACE)IWGDSGKLI(DAB)TTA ANALOGUE OF HIV . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1401.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 4 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 141 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 115.0 -1.2 5.7 5.5 2 3 A W - 0 0 165 2,-0.1 3,-0.1 6,-0.1 6,-0.0 0.484 360.0 -29.7 -73.4 -2.3 1.9 7.8 4.5 3 4 A G S S+ 0 0 48 1,-0.3 2,-0.3 0, 0.0 5,-0.1 -0.062 118.3 57.6-170.3 -79.7 1.6 6.9 0.7 4 5 A D - 0 0 60 3,-0.1 2,-1.3 1,-0.1 -1,-0.3 -0.611 66.7-136.4 -82.3 133.0 0.2 3.5 -0.6 5 6 A S S S+ 0 0 112 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.1 -0.657 89.5 2.1 -90.2 83.8 -3.5 2.5 0.4 6 7 A G S S+ 0 0 63 -2,-1.3 2,-1.1 0, 0.0 -1,-0.1 -0.765 129.9 43.8 144.1 -91.7 -3.0 -1.3 1.3 7 8 A K S S- 0 0 181 -2,-0.3 2,-1.7 1,-0.1 -3,-0.1 -0.748 74.4-160.2 -87.9 95.0 0.7 -2.5 1.0 8 9 A L + 0 0 61 -2,-1.1 -1,-0.1 1,-0.2 -6,-0.1 -0.514 52.8 111.9 -82.6 75.7 2.5 0.5 2.7 9 10 A I + 0 0 134 -2,-1.7 2,-1.1 4,-0.1 4,-0.2 -0.130 22.7 132.6-138.1 40.4 6.1 0.0 1.4 10 11 A X + 0 0 33 1,-0.1 -2,-0.0 2,-0.1 -1,-0.0 -0.397 26.2 133.3 -93.1 60.5 6.8 3.0 -1.1 11 12 A T S S+ 0 0 123 -2,-1.1 -1,-0.1 2,-0.2 -2,-0.0 0.965 84.1 0.7 -72.7 -85.2 10.3 4.0 0.4 12 13 A T 0 0 147 1,-0.2 -2,-0.1 -3,-0.2 -3,-0.0 0.967 360.0 360.0 -69.9 -53.5 12.7 4.5 -2.8 13 14 A A 0 0 133 -4,-0.2 -1,-0.2 0, 0.0 -2,-0.2 -0.692 360.0 360.0 -94.4 360.0 10.0 3.8 -5.5