==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 31-MAY-01 1JAU . COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN (GP41); . SOURCE 2 SYNTHETIC: YES; . AUTHOR D.J.SCHIBLI,R.C.MONTELARO,H.J.VOGEL . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2216.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 10 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 36.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 224 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-167.6 17.3 0.6 1.6 2 2 A W + 0 0 170 1,-0.1 3,-0.4 3,-0.0 4,-0.3 0.123 360.0 114.6-106.9 18.2 13.9 1.9 0.4 3 3 A A + 0 0 55 1,-0.2 -1,-0.1 2,-0.1 4,-0.1 0.032 59.2 81.2 -78.0 30.4 12.2 -1.4 0.8 4 4 A S S S+ 0 0 102 -2,-0.3 -1,-0.2 2,-0.1 -2,-0.0 -0.225 80.4 57.8-129.1 43.3 10.0 0.2 3.4 5 5 A L S > S+ 0 0 71 -3,-0.4 4,-1.6 3,-0.0 3,-0.5 0.466 92.5 61.1-140.4 -26.3 7.4 2.0 1.4 6 6 A W H > S+ 0 0 152 -4,-0.3 4,-2.0 2,-0.2 5,-0.2 0.787 87.6 74.7 -77.3 -29.3 5.8 -0.7 -0.8 7 7 A N H 4 S+ 0 0 77 1,-0.2 -1,-0.2 2,-0.2 -3,-0.0 0.798 116.5 21.4 -53.1 -29.5 4.5 -2.6 2.3 8 8 A W H >> S+ 0 0 142 -3,-0.5 4,-1.1 2,-0.1 3,-0.9 0.641 112.0 72.6-110.0 -26.1 1.9 0.1 2.6 9 9 A F H 3< S+ 0 0 130 -4,-1.6 -2,-0.2 1,-0.3 -3,-0.2 0.793 100.8 48.8 -60.4 -27.7 2.0 1.4 -1.0 10 10 A N T >X S+ 0 0 62 -4,-2.0 3,-1.0 1,-0.2 4,-0.7 0.643 100.0 66.9 -85.7 -16.3 0.2 -1.8 -1.9 11 11 A I H <> S+ 0 0 52 -3,-0.9 4,-2.5 1,-0.2 5,-0.4 0.817 88.5 64.7 -72.6 -31.4 -2.3 -1.3 0.9 12 12 A T H 3< S+ 0 0 31 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.1 0.440 96.9 62.6 -71.3 2.3 -3.7 1.8 -0.8 13 13 A N H <4 S+ 0 0 112 -3,-1.0 4,-0.2 3,-0.1 -1,-0.2 0.865 116.9 20.0 -93.3 -46.8 -4.8 -0.7 -3.5 14 14 A W H >X S+ 0 0 127 -4,-0.7 4,-1.5 -3,-0.3 3,-0.7 0.831 122.0 57.2 -92.1 -38.1 -7.3 -2.9 -1.6 15 15 A L H 3X S+ 0 0 31 -4,-2.5 4,-2.3 1,-0.3 -3,-0.2 0.868 104.2 55.3 -60.5 -34.8 -8.0 -0.5 1.3 16 16 A W H 34 S+ 0 0 187 -5,-0.4 -1,-0.3 1,-0.2 -2,-0.2 0.789 107.9 49.6 -66.9 -26.7 -9.1 2.0 -1.3 17 17 A Y H <4 S+ 0 0 194 -3,-0.7 -1,-0.2 -4,-0.2 -2,-0.2 0.733 109.5 53.2 -82.1 -25.3 -11.5 -0.7 -2.5 18 18 A I H < 0 0 104 -4,-1.5 -2,-0.2 1,-0.2 -3,-0.1 0.974 360.0 360.0 -73.4 -59.0 -12.7 -1.3 1.1 19 19 A K < 0 0 193 -4,-2.3 -1,-0.2 -5,-0.1 -2,-0.2 0.458 360.0 360.0 -78.3 360.0 -13.7 2.3 2.0