==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 31-MAY-01 1JAV . COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN (GP41); . SOURCE 2 SYNTHETIC: YES; . AUTHOR D.J.SCHIBLI,R.C.MONTELARO,H.J.VOGEL . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2183.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 13 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 26.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 36.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K > 0 0 198 0, 0.0 3,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-167.9 16.3 0.7 3.4 2 2 A W G > + 0 0 185 1,-0.3 3,-0.7 2,-0.1 4,-0.2 0.411 360.0 104.0 -69.6 5.0 13.6 2.4 1.4 3 3 A A G 3 + 0 0 38 1,-0.3 4,-0.4 2,-0.1 3,-0.3 0.410 60.6 80.8 -68.1 5.5 11.9 -1.0 1.3 4 4 A S G < S+ 0 0 87 -3,-0.7 -1,-0.3 1,-0.2 -2,-0.1 -0.078 81.3 62.0-102.6 33.2 9.5 0.4 4.0 5 5 A L S <> S+ 0 0 75 -3,-0.7 4,-0.8 3,-0.0 -1,-0.2 0.459 93.4 57.8-130.0 -13.3 7.4 2.2 1.4 6 6 A W H > S+ 0 0 153 -3,-0.3 4,-1.7 2,-0.2 5,-0.2 0.784 89.0 72.3 -89.1 -31.7 6.0 -0.6 -0.7 7 7 A N H 4 S+ 0 0 75 -4,-0.4 -1,-0.2 1,-0.2 -3,-0.1 0.736 115.3 27.3 -55.3 -22.2 4.4 -2.5 2.2 8 8 A W H >> S+ 0 0 138 2,-0.1 4,-1.3 3,-0.1 3,-0.6 0.622 108.4 71.4-111.5 -24.5 1.8 0.3 2.2 9 9 A F H 3< S+ 0 0 137 -4,-0.8 -2,-0.2 1,-0.3 -3,-0.1 0.752 103.0 46.8 -64.3 -23.1 2.0 1.3 -1.4 10 10 A N T >X S+ 0 0 50 -4,-1.7 3,-0.7 1,-0.1 4,-0.6 0.603 102.3 65.0 -92.1 -14.9 0.3 -2.0 -2.2 11 11 A I H <>>S+ 0 0 48 -3,-0.6 4,-2.9 -5,-0.2 5,-0.6 0.815 85.6 70.1 -76.3 -31.9 -2.3 -1.4 0.5 12 12 A T H 3<5S+ 0 0 35 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.1 0.525 94.8 61.4 -63.7 -3.0 -3.7 1.7 -1.3 13 13 A N H <45S+ 0 0 114 -3,-0.7 -1,-0.2 3,-0.1 -2,-0.2 0.879 119.9 16.9 -90.0 -46.3 -5.0 -0.9 -3.8 14 14 A W H >X5S+ 0 0 130 -4,-0.6 4,-1.6 -3,-0.5 3,-0.9 0.820 122.7 58.4 -95.2 -39.1 -7.3 -3.0 -1.6 15 15 A L H 3X5S+ 0 0 36 -4,-2.9 4,-2.4 1,-0.3 -3,-0.2 0.877 101.8 57.8 -58.5 -36.5 -7.7 -0.6 1.3 16 16 A W H 34