==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 21-NOV-06 2JA4 . COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.RODAMILANS,I.G.MUNOZ,M.R.SARRIAS,F.LOZANO,F.J.BLANCO, . 101 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6094.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 49.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 24.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 269 A A 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-113.7 -18.1 33.2 8.8 2 270 A F + 0 0 213 1,-0.2 3,-0.1 0, 0.0 0, 0.0 0.539 360.0 163.0 66.8 10.2 -16.1 30.8 11.0 3 271 A Q - 0 0 108 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 -0.322 48.1 -81.7 -68.4 150.4 -13.8 29.3 8.3 4 272 A P - 0 0 83 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.024 48.4-118.1 -52.2 158.8 -10.6 27.4 9.3 5 273 A K - 0 0 119 -3,-0.1 2,-0.5 78,-0.1 21,-0.2 -0.822 7.1-128.2-112.0 130.7 -7.6 29.4 10.2 6 274 A V - 0 0 19 76,-0.7 2,-0.3 -2,-0.4 19,-0.2 -0.674 34.1-149.6 -68.1 124.9 -4.2 29.4 8.6 7 275 A Q E -A 24 0A 83 17,-2.4 17,-1.9 -2,-0.5 2,-0.3 -0.763 13.0-164.5 -92.5 155.7 -1.8 28.9 11.5 8 276 A S E +A 23 0A 19 -2,-0.3 2,-0.3 15,-0.2 15,-0.2 -0.896 11.8 172.7-136.8 156.2 1.8 30.4 11.6 9 277 A R E -A 22 0A 94 13,-2.2 13,-3.5 -2,-0.3 2,-0.4 -0.955 27.4-124.4-157.0 168.9 5.0 29.9 13.5 10 278 A L E -A 21 0A 21 -2,-0.3 2,-0.3 6,-0.2 11,-0.2 -0.934 29.2-165.7-121.2 125.1 8.7 31.1 13.4 11 279 A V E +A 20 0A 48 9,-2.2 9,-3.0 -2,-0.4 -2,-0.0 -0.917 59.3 18.1-122.2 154.1 11.5 28.5 13.3 12 280 A G S S+ 0 0 78 -2,-0.3 -1,-0.2 1,-0.2 7,-0.1 0.594 79.4 154.5 74.8 11.4 15.3 28.5 13.8 13 281 A G - 0 0 28 5,-0.4 -1,-0.2 -3,-0.2 6,-0.1 -0.321 58.9-125.9 -62.7 156.5 15.2 31.9 15.7 14 282 A S S S+ 0 0 112 2,-0.0 2,-0.3 3,-0.0 -1,-0.1 0.406 105.5 16.4 -72.6 0.1 18.0 32.8 18.1 15 283 A S S > S- 0 0 56 3,-0.3 3,-1.0 1,-0.0 -2,-0.2 -0.943 92.5-100.9-151.7 178.2 14.8 33.3 20.2 16 284 A I T 3 S+ 0 0 142 -2,-0.3 -6,-0.2 1,-0.2 -3,-0.1 0.737 115.2 62.5 -79.0 -12.0 11.1 32.2 20.0 17 285 A a T 3 S+ 0 0 9 82,-0.1 82,-2.4 83,-0.1 2,-0.3 0.237 105.0 46.1 -95.4 15.9 10.1 35.7 18.7 18 286 A E E < + B 0 98A 32 -3,-1.0 -5,-0.4 80,-0.2 -3,-0.3 -0.988 68.4 94.5-148.3 157.8 12.1 35.5 15.5 19 287 A G E S- B 0 97A 0 78,-2.4 78,-2.8 -2,-0.3 2,-0.3 -0.919 71.9 -40.9 149.9-176.3 12.7 33.0 12.8 20 288 A T E -AB 11 96A 31 -9,-3.0 -9,-2.2 -2,-0.3 2,-0.4 -0.636 65.1-113.3 -86.6 137.8 11.7 31.8 9.3 21 289 A V E -A 10 0A 0 74,-2.7 11,-2.3 -2,-0.3 2,-0.3 -0.579 36.8-179.7 -81.6 129.8 7.9 31.9 8.9 22 290 A E E -AC 9 31A 36 -13,-3.5 -13,-2.2 -2,-0.4 2,-0.3 -0.911 4.5-167.3-120.4 154.0 6.1 28.6 8.5 23 291 A V E -AC 8 30A 0 7,-2.6 7,-2.3 -2,-0.3 2,-0.3 -0.916 7.5-174.7-134.1 162.8 2.4 28.0 8.0 24 292 A R E -A 7 0A 74 -17,-1.9 -17,-2.4 -2,-0.3 5,-0.2 -0.985 6.7-174.6-149.4 145.7 0.0 25.0 8.1 25 293 A Q S S- 0 0 60 3,-0.4 60,-0.2 -2,-0.3 -19,-0.1 -0.502 86.1 -17.3-141.9 81.5 -3.7 24.8 7.3 26 294 A G S S- 0 0 70 -21,-0.2 2,-0.1 -2,-0.1 -20,-0.0 0.182 129.9 -49.9 94.5 -18.5 -5.0 21.3 8.1 27 295 A A S S+ 0 0 49 1,-0.3 -2,-0.1 -4,-0.0 -4,-0.0 -0.160 88.7 82.9 155.4-161.3 -1.8 20.3 8.2 28 296 A Q - 0 0 111 -2,-0.1 -3,-0.4 -4,-0.1 -1,-0.3 0.511 60.5-121.4 81.5 108.3 1.8 19.7 7.4 29 297 A W + 0 0 58 -5,-0.2 2,-0.3 -7,-0.1 -5,-0.2 -0.659 42.1 163.3 -72.1 136.8 4.0 22.7 8.4 30 298 A A E -C 23 0A 19 -7,-2.3 -7,-2.6 -2,-0.3 41,-0.1 -0.986 44.8 -82.1-151.2 165.2 6.0 24.2 5.5 31 299 A A E -C 22 0A 11 -2,-0.3 41,-3.3 39,-0.3 2,-0.5 -0.367 47.9-117.2 -64.4 144.9 7.9 27.4 4.8 32 300 A L E -e 72 0B 0 -11,-2.3 2,-0.5 39,-0.2 63,-0.3 -0.763 22.3-147.3 -80.2 126.4 5.6 30.2 3.7 33 301 A b E -e 73 0B 0 39,-2.8 41,-0.6 -2,-0.5 2,-0.5 -0.832 13.2-163.3 -86.4 130.0 6.4 31.4 0.1 34 302 A D + 0 0 15 59,-3.6 59,-0.2 -2,-0.5 39,-0.0 -0.982 14.6 179.0-119.3 128.3 5.7 35.1 -0.2 35 303 A S + 0 0 61 -2,-0.5 -1,-0.1 57,-0.1 59,-0.1 0.124 32.1 133.4-116.4 15.9 5.5 36.5 -3.8 36 304 A S - 0 0 55 1,-0.1 -2,-0.1 4,-0.1 3,-0.1 -0.318 43.9-153.9 -56.7 146.0 4.7 40.2 -3.1 37 305 A S S S+ 0 0 132 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.856 82.0 51.9 -96.3 -45.8 6.8 42.6 -5.2 38 306 A A S S- 0 0 80 1,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.696 95.2-120.8 -75.3 143.9 6.7 45.6 -2.9 39 307 A R - 0 0 158 -2,-0.3 2,-0.3 -3,-0.1 -2,-0.0 -0.800 35.7-178.6 -89.6 128.5 7.8 44.6 0.6 40 308 A S - 0 0 60 -2,-0.5 4,-0.3 1,-0.1 3,-0.3 -0.931 30.1-147.2-126.6 148.2 5.1 45.4 3.2 41 309 A S S > S+ 0 0 57 -2,-0.3 4,-1.8 1,-0.2 5,-0.2 0.510 76.2 98.7 -95.8 0.2 5.2 44.8 7.0 42 310 A L H > S+ 0 0 74 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.855 84.3 40.9 -54.4 -48.1 1.4 44.0 7.1 43 311 A R H > S+ 0 0 22 -3,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.859 114.4 52.7 -66.4 -40.2 1.6 40.2 7.1 44 312 A W H > S+ 0 0 8 -4,-0.3 4,-2.6 2,-0.2 -2,-0.2 0.742 105.3 54.4 -76.0 -25.1 4.6 40.1 9.5 45 313 A E H X S+ 0 0 37 -4,-1.8 4,-2.5 2,-0.2 5,-0.2 0.936 111.2 46.3 -71.5 -46.6 2.8 42.3 12.1 46 314 A E H X S+ 0 0 43 -4,-1.5 4,-2.4 -5,-0.2 -2,-0.2 0.940 113.4 48.2 -55.0 -51.1 -0.1 39.8 12.0 47 315 A V H X S+ 0 0 2 -4,-2.4 4,-2.0 2,-0.2 5,-0.2 0.971 112.8 48.4 -56.2 -54.9 2.3 36.8 12.3 48 316 A c H <>S+ 0 0 0 -4,-2.6 5,-2.6 1,-0.2 6,-0.4 0.920 113.0 47.5 -52.3 -47.0 4.3 38.5 15.3 49 317 A R H ><5S+ 0 0 165 -4,-2.5 3,-1.7 1,-0.2 5,-0.2 0.925 110.2 52.4 -64.2 -38.4 1.0 39.3 17.1 50 318 A E H 3<5S+ 0 0 141 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.810 106.6 52.5 -67.3 -33.0 -0.3 35.8 16.6 51 319 A Q T 3<5S- 0 0 50 -4,-2.0 -1,-0.3 3,-0.2 -2,-0.2 0.450 116.2-120.3 -73.0 -0.9 2.9 34.4 18.0 52 320 A Q T < 5S+ 0 0 170 -3,-1.7 -3,-0.2 -5,-0.2 -2,-0.1 0.952 80.3 124.3 57.1 48.0 2.2 36.7 21.0 53 321 A a < - 0 0 2 -5,-2.6 48,-4.3 1,-0.5 47,-0.4 0.178 68.3-125.3-127.2 14.0 5.6 38.3 20.3 54 322 A G - 0 0 24 -6,-0.4 -1,-0.5 47,-0.3 -3,-0.2 -0.434 59.7 -7.9 83.5-151.9 4.3 41.9 20.0 55 323 A S S S- 0 0 38 -7,-0.1 45,-2.7 -2,-0.1 2,-0.5 -0.212 75.6 -97.4 -75.8 164.2 5.0 44.0 16.9 56 324 A V E -D 99 0A 22 43,-0.2 43,-0.3 1,-0.2 3,-0.1 -0.754 33.2-176.3 -80.2 129.2 7.2 43.2 14.0 57 325 A N E - 0 0 114 41,-2.5 2,-0.3 -2,-0.5 42,-0.2 0.903 66.3 -21.1 -84.8 -53.9 10.7 44.9 14.4 58 326 A S E -D 98 0A 60 40,-1.6 40,-3.6 -14,-0.1 -1,-0.4 -0.957 55.5-163.4-145.7 168.1 12.2 43.8 11.0 59 327 A Y E -D 97 0A 30 -2,-0.3 2,-0.3 38,-0.2 38,-0.2 -0.980 5.4-173.9-147.3 154.8 11.8 41.2 8.2 60 328 A R E -D 96 0A 141 36,-2.4 36,-3.0 -2,-0.3 2,-0.2 -0.986 26.2-110.7-142.1 154.9 14.0 40.0 5.3 61 329 A V E -D 95 0A 78 -2,-0.3 2,-0.3 34,-0.2 34,-0.2 -0.563 27.6-163.0 -86.3 149.2 13.6 37.6 2.4 62 330 A L E +D 94 0A 37 32,-2.0 32,-1.0 -2,-0.2 0, 0.0 -0.859 65.2 22.7-122.0 161.3 15.4 34.2 2.1 63 331 A D S > S+ 0 0 60 -2,-0.3 3,-1.7 1,-0.2 6,-0.2 0.633 70.9 176.7 61.0 18.8 16.0 31.9 -0.9 64 332 A A T 3 + 0 0 71 1,-0.2 -1,-0.2 -3,-0.1 28,-0.1 -0.356 69.7 8.8 -54.9 131.9 15.7 34.6 -3.5 65 333 A G T 3 S+ 0 0 64 1,-0.2 -1,-0.2 26,-0.1 -2,-0.1 0.611 87.7 134.0 72.4 17.6 16.4 33.1 -7.0 66 334 A D X - 0 0 52 -3,-1.7 3,-1.4 1,-0.2 25,-0.4 -0.892 37.0-167.8 -99.2 108.3 16.5 29.4 -5.9 67 335 A P T 3 S+ 0 0 59 0, 0.0 24,-0.3 0, 0.0 -1,-0.2 0.673 83.8 59.1 -70.5 -18.1 14.4 27.5 -8.4 68 336 A T T 3 S+ 0 0 104 22,-0.2 2,-0.2 23,-0.1 -2,-0.0 0.437 76.5 109.4 -91.7 1.3 14.5 24.5 -6.2 69 337 A S < - 0 0 7 -3,-1.4 23,-1.0 -6,-0.2 2,-0.3 -0.591 45.4-173.8 -83.0 156.1 12.9 26.0 -3.0 70 338 A R + 0 0 145 -2,-0.2 -39,-0.3 21,-0.1 2,-0.3 -0.914 19.6 122.4-140.1 148.8 9.4 24.8 -2.1 71 339 A G E - F 0 88B 9 17,-2.2 17,-2.6 -2,-0.3 2,-0.3 -0.928 56.9 -54.0-178.9-149.3 6.8 25.6 0.5 72 340 A L E -eF 32 87B 12 -41,-3.3 -39,-2.8 -2,-0.3 2,-0.4 -0.879 41.2-151.6-120.2 144.0 3.2 26.8 0.9 73 341 A F E -eF 33 86B 34 13,-2.9 13,-2.1 -2,-0.3 -39,-0.1 -0.911 6.9-161.2-120.4 133.4 1.6 29.8 -0.8 74 342 A d - 0 0 2 -41,-0.6 11,-0.1 -2,-0.4 8,-0.1 -0.957 9.1-156.0-114.5 116.6 -1.4 32.1 0.4 75 343 A P + 0 0 63 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.211 65.9 80.0 -80.5 20.3 -2.9 34.2 -2.5 76 344 A H S S- 0 0 94 1,-0.1 6,-0.1 2,-0.1 -2,-0.1 -0.875 87.1-110.1-124.6 164.8 -4.4 36.9 -0.2 77 345 A Q S S+ 0 0 139 -2,-0.3 2,-0.4 4,-0.1 -1,-0.1 0.859 102.3 33.9 -55.4 -44.2 -2.9 39.9 1.4 78 346 A K S > S- 0 0 78 1,-0.1 3,-2.2 -32,-0.0 4,-0.3 -0.916 73.0-134.6-121.8 138.9 -3.2 38.6 5.0 79 347 A L G > S+ 0 0 5 -2,-0.4 3,-1.8 1,-0.3 -73,-0.4 0.845 109.1 64.4 -57.2 -34.7 -2.8 35.1 6.1 80 348 A S G 3 S+ 0 0 45 1,-0.3 -1,-0.3 -75,-0.1 -3,-0.1 0.419 98.5 55.5 -69.6 1.3 -5.9 35.6 8.2 81 349 A Q G < S+ 0 0 88 -3,-2.2 -1,-0.3 -5,-0.1 2,-0.3 0.415 92.9 88.4-106.2 -10.7 -7.7 36.0 4.9 82 350 A d < + 0 0 1 -3,-1.8 -76,-0.7 -4,-0.3 3,-0.1 -0.645 41.4 170.7 -88.3 149.1 -6.5 32.7 3.6 83 351 A H S S+ 0 0 55 1,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.106 73.4 39.0-134.8 15.2 -8.6 29.5 4.3 84 352 A E - 0 0 104 2,-0.0 2,-0.3 -11,-0.0 -1,-0.3 -0.954 66.8-149.3-169.4 141.9 -6.5 27.4 2.0 85 353 A L - 0 0 26 -2,-0.3 2,-0.4 -60,-0.2 -11,-0.2 -0.901 10.2-151.0-121.5 143.8 -2.8 27.0 1.1 86 354 A W E -F 73 0B 118 -13,-2.1 -13,-2.9 -2,-0.3 2,-0.3 -0.910 23.2-110.9-112.4 147.9 -1.3 25.9 -2.3 87 355 A E E -F 72 0B 109 -2,-0.4 2,-0.5 -15,-0.2 -15,-0.2 -0.539 23.3-165.4 -67.6 128.6 2.0 24.1 -2.9 88 356 A R E -F 71 0B 80 -17,-2.6 -17,-2.2 -2,-0.3 4,-0.1 -0.975 6.4-177.0-114.7 122.7 4.7 26.2 -4.6 89 357 A N + 0 0 76 -2,-0.5 2,-0.3 -19,-0.2 -19,-0.1 0.374 62.5 29.5-110.0 4.3 7.3 23.7 -5.8 90 358 A S S S+ 0 0 59 1,-0.1 -22,-0.2 -19,-0.1 -19,-0.1 -0.974 112.5 21.5-153.3 158.4 9.9 26.0 -7.3 91 359 A Y + 0 0 139 -25,-0.4 2,-1.0 -24,-0.3 -21,-0.1 0.895 69.3 171.6 52.0 46.5 11.0 29.6 -6.7 92 360 A b - 0 0 0 -23,-1.0 2,-0.7 -26,-0.4 -1,-0.2 -0.769 16.6-161.7 -85.8 108.7 9.7 29.8 -3.1 93 361 A K - 0 0 72 -2,-1.0 -59,-3.6 -59,-0.2 -30,-0.2 -0.814 14.2-164.1 -84.2 123.6 10.9 33.0 -1.6 94 362 A K E - D 0 62A 45 -32,-1.0 -32,-2.0 -2,-0.7 2,-0.4 -0.240 9.1-127.9 -98.9-179.7 10.6 32.8 2.2 95 363 A V E - D 0 61A 5 -63,-0.3 -74,-2.7 -74,-0.3 2,-0.5 -0.997 4.9-156.3-141.4 131.0 10.8 35.3 5.0 96 364 A F E -BD 20 60A 20 -36,-3.0 -36,-2.4 -2,-0.4 2,-0.4 -0.911 23.9-164.6-100.2 131.2 12.7 35.6 8.2 97 365 A V E -BD 19 59A 0 -78,-2.8 -78,-2.4 -2,-0.5 2,-0.5 -0.959 13.7-158.5-122.6 140.6 10.9 37.8 10.7 98 366 A T E -BD 18 58A 34 -40,-3.6 -41,-2.5 -2,-0.4 -40,-1.6 -0.979 18.3-161.1-118.9 120.0 12.2 39.5 13.9 99 367 A c E - D 0 56A 4 -82,-2.4 -43,-0.2 -2,-0.5 -45,-0.1 -0.498 22.8-125.2 -96.6 168.9 9.5 40.4 16.4 100 368 A Q 0 0 105 -45,-2.7 -46,-0.2 -47,-0.4 -44,-0.1 0.920 360.0 360.0 -65.5 -54.6 9.4 42.9 19.4 101 369 A D 0 0 127 -48,-4.3 -47,-0.3 -46,-0.3 -1,-0.1 -0.411 360.0 360.0 113.9 360.0 8.4 40.5 22.2