==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JUN-01 1JBI . COMPND 2 MOLECULE: COCHLIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.LIEPINSH,M.TREXLER,A.KAIKKONEN,J.WEIGELT,L.BANYAI, . 100 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5542.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 56.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 23.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A T 0 0 203 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 136.6 -17.9 -6.8 -2.2 2 2 A A - 0 0 77 1,-0.1 19,-0.2 19,-0.0 2,-0.0 -0.874 360.0-104.6-138.3 156.1 -14.4 -8.0 -2.8 3 3 A P - 0 0 57 0, 0.0 2,-0.6 0, 0.0 19,-0.3 -0.207 40.5-104.0 -72.9 177.3 -10.7 -6.9 -2.8 4 4 A I E -a 22 0A 76 17,-2.3 19,-2.2 -2,-0.0 2,-0.8 -0.920 22.6-145.1-108.2 118.7 -8.6 -6.2 -5.9 5 5 A A E -a 23 0A 75 -2,-0.6 2,-0.2 17,-0.2 19,-0.2 -0.789 25.9-165.5 -83.4 111.4 -6.2 -8.9 -6.9 6 6 A I - 0 0 9 17,-2.6 16,-0.0 -2,-0.8 -2,-0.0 -0.669 31.4-114.7 -99.0 159.3 -3.3 -6.8 -8.3 7 7 A T - 0 0 116 -2,-0.2 17,-0.1 1,-0.1 21,-0.1 0.187 49.3-111.4 -83.6 21.8 -0.4 -8.3 -10.3 8 8 A a S S+ 0 0 13 15,-0.3 40,-0.2 1,-0.1 -1,-0.1 0.498 112.9 75.6 54.3 13.4 2.1 -7.4 -7.5 9 9 A F + 0 0 106 38,-0.1 2,-0.1 39,-0.1 -1,-0.1 0.443 66.0 115.8-119.2 -10.0 3.6 -4.7 -9.9 10 10 A T - 0 0 18 36,-0.1 37,-2.6 1,-0.1 38,-0.4 -0.413 54.9-151.5 -59.4 127.0 0.6 -2.3 -9.4 11 11 A R B >> -E 46 0B 111 35,-0.3 3,-1.4 -2,-0.1 4,-0.7 -0.482 35.2 -92.8 -92.1 172.0 1.7 0.9 -7.7 12 12 A G T 34 S+ 0 0 1 33,-2.8 32,-0.2 31,-0.6 31,-0.2 0.611 118.1 77.2 -61.0 -9.8 -0.3 3.3 -5.4 13 13 A L T 34 S+ 0 0 65 30,-0.8 -1,-0.3 32,-0.2 3,-0.2 0.873 96.0 44.5 -68.2 -39.3 -1.1 5.2 -8.7 14 14 A D T <4 S+ 0 0 112 -3,-1.4 2,-0.5 1,-0.2 -1,-0.2 0.781 116.6 45.6 -76.4 -30.9 -3.7 2.5 -9.7 15 15 A I < + 0 0 13 -4,-0.7 -1,-0.2 28,-0.1 5,-0.1 -0.881 58.0 135.5-125.7 97.9 -5.3 2.2 -6.2 16 16 A R + 0 0 128 -2,-0.5 -1,-0.1 -3,-0.2 78,-0.1 -0.088 29.4 137.3-131.3 26.5 -6.1 5.5 -4.5 17 17 A K S S- 0 0 132 1,-0.1 51,-0.3 51,-0.1 3,-0.2 -0.325 74.3 -95.6 -73.6 166.9 -9.7 4.8 -3.2 18 18 A E S S- 0 0 144 1,-0.3 50,-2.5 49,-0.2 2,-0.3 0.873 109.0 -11.3 -52.5 -45.2 -10.7 5.9 0.3 19 19 A K E S- B 0 67A 147 48,-0.3 2,-0.4 2,-0.0 -1,-0.3 -0.910 74.8-178.3-155.2 129.0 -9.9 2.4 1.5 20 20 A A E - B 0 66A 7 46,-2.7 46,-2.7 -2,-0.3 2,-0.4 -0.999 19.7-142.8-137.1 130.9 -9.2 -0.6 -0.8 21 21 A D E - B 0 65A 40 -2,-0.4 -17,-2.3 44,-0.2 2,-0.4 -0.782 28.3-171.6 -93.8 131.9 -8.5 -4.2 0.2 22 22 A V E -aB 4 64A 0 42,-2.8 42,-3.1 -2,-0.4 2,-0.4 -0.976 20.4-148.3-133.5 144.4 -5.9 -5.8 -2.2 23 23 A L E -aB 5 63A 55 -19,-2.2 -17,-2.6 -2,-0.4 -15,-0.3 -0.933 7.7-157.0-107.2 134.4 -4.5 -9.3 -2.8 24 24 A a E - B 0 62A 3 38,-1.9 38,-2.4 -2,-0.4 2,-0.2 -0.886 15.8-160.6-110.1 86.6 -0.9 -9.6 -4.0 25 25 A P + 0 0 74 0, 0.0 3,-0.2 0, 0.0 2,-0.1 -0.557 55.0 27.2 -66.7 143.2 -0.7 -13.0 -5.7 26 26 A G S S- 0 0 56 -2,-0.2 36,-0.1 34,-0.2 -2,-0.1 -0.362 101.3 -73.4 91.0 176.8 2.8 -14.5 -6.1 27 27 A G - 0 0 45 -2,-0.1 34,-0.3 34,-0.1 -1,-0.1 0.753 50.4-150.7 -80.9 -22.3 6.0 -14.0 -4.1 28 28 A b - 0 0 18 32,-0.2 33,-0.2 -3,-0.2 -2,-0.1 0.971 23.4-157.0 41.2 75.5 6.7 -10.4 -5.4 29 29 A P > - 0 0 68 0, 0.0 2,-2.6 0, 0.0 3,-0.5 -0.013 36.3 -74.9 -69.5 177.4 10.5 -10.6 -5.0 30 30 A L T 3 S+ 0 0 124 1,-0.2 3,-0.1 29,-0.1 -2,-0.0 -0.427 90.1 124.8 -69.5 64.0 13.1 -7.8 -4.7 31 31 A E T 3 S- 0 0 155 -2,-2.6 -1,-0.2 1,-0.2 2,-0.2 0.878 81.2 -7.3 -95.7 -52.6 12.6 -7.0 -8.4 32 32 A E S < S+ 0 0 130 -3,-0.5 2,-0.5 2,-0.0 17,-0.2 -0.705 73.4 151.5-149.6 90.1 11.6 -3.3 -8.5 33 33 A F + 0 0 38 -2,-0.2 2,-0.4 -3,-0.1 51,-0.4 -0.946 0.6 155.3-126.6 113.0 11.0 -1.5 -5.2 34 34 A S - 0 0 56 -2,-0.5 12,-0.5 10,-0.1 2,-0.3 -0.989 26.0-168.4-126.7 113.7 11.7 2.2 -5.1 35 35 A V E -f 85 0C 0 49,-2.3 51,-1.5 -2,-0.4 2,-0.5 -0.755 12.9-149.3-113.2 155.5 9.5 3.5 -2.3 36 36 A Y E -f 86 0C 56 49,-0.3 6,-3.1 1,-0.3 9,-0.2 -0.923 64.1 -10.4-134.9 105.5 8.8 7.2 -1.5 37 37 A G S S- 0 0 0 49,-0.5 2,-0.3 -2,-0.5 -1,-0.3 0.325 74.8-104.5 80.3 144.3 8.1 8.2 2.1 38 38 A N S S- 0 0 57 38,-0.1 2,-2.6 47,-0.1 38,-0.1 -0.839 99.0 -3.9 -96.4 148.3 7.6 5.8 5.0 39 39 A I S S+ 0 0 70 -2,-0.3 2,-1.4 11,-0.2 58,-0.3 -0.446 132.1 64.6 63.4 -67.0 3.9 5.5 6.3 40 40 A V S S- 0 0 14 -2,-2.6 2,-0.7 56,-0.1 56,-0.2 -0.741 80.3-170.4 -80.0 93.5 2.9 8.1 3.8 41 41 A Y E -C 95 0A 4 54,-2.8 54,-1.9 -2,-1.4 -4,-0.2 -0.814 19.4-131.5 -86.0 113.8 3.8 6.1 0.7 42 42 A A E > -C 94 0A 0 -6,-3.1 3,-2.5 -2,-0.7 -6,-0.3 -0.452 28.7 -98.7 -65.7 152.4 3.6 8.5 -2.2 43 43 A S T 3 S+ 0 0 2 50,-2.4 -30,-0.8 1,-0.3 -31,-0.6 0.702 117.4 64.1 -41.0 -44.4 1.5 7.2 -5.2 44 44 A V T 3 S+ 0 0 35 -32,-0.2 -1,-0.3 49,-0.2 -10,-0.1 0.672 79.8 105.8 -64.3 -18.2 4.6 6.1 -7.3 45 45 A S S < S- 0 0 0 -3,-2.5 -33,-2.8 -9,-0.2 -32,-0.2 -0.372 79.3-110.4 -65.7 139.3 5.5 3.4 -4.7 46 46 A S B > -E 11 0B 9 -12,-0.5 4,-3.0 -35,-0.3 -35,-0.3 -0.346 19.2-126.0 -60.5 147.7 4.8 -0.3 -5.6 47 47 A I H > S+ 0 0 2 -37,-2.6 4,-2.6 2,-0.2 5,-0.2 0.927 117.2 44.8 -64.1 -41.3 2.0 -1.8 -3.5 48 48 A b H > S+ 0 0 1 -38,-0.4 4,-3.1 -40,-0.2 5,-0.4 0.955 112.9 51.2 -61.3 -51.8 4.5 -4.6 -2.7 49 49 A G H > S+ 0 0 0 1,-0.2 4,-2.4 -17,-0.2 -2,-0.2 0.939 116.4 39.4 -51.0 -57.0 7.2 -2.0 -2.0 50 50 A A H X S+ 0 0 0 -4,-3.0 4,-3.1 2,-0.2 -1,-0.2 0.889 117.9 49.3 -59.6 -46.4 5.0 0.0 0.4 51 51 A A H X>S+ 0 0 0 -4,-2.6 5,-2.2 -5,-0.2 4,-1.0 0.941 115.8 40.0 -64.2 -53.0 3.5 -3.1 2.0 52 52 A V H <5S+ 0 0 5 -4,-3.1 3,-0.2 3,-0.2 -1,-0.2 0.896 117.1 51.5 -66.1 -37.4 6.7 -5.0 2.7 53 53 A H H <5S+ 0 0 10 -4,-2.4 -2,-0.2 -5,-0.4 -3,-0.2 0.974 111.0 47.0 -59.8 -53.5 8.4 -1.6 3.7 54 54 A R H <5S- 0 0 103 -4,-3.1 -1,-0.2 -5,-0.2 -2,-0.2 0.708 116.9-121.4 -56.5 -24.1 5.4 -0.9 6.1 55 55 A G T <5S+ 0 0 41 -4,-1.0 -3,-0.2 -3,-0.2 -4,-0.1 0.548 71.0 135.8 87.5 13.5 5.9 -4.5 7.3 56 56 A V S - 0 0 94 -2,-0.3 2,-2.5 3,-0.3 3,-0.8 -0.308 62.0 -75.1 -75.7 175.8 7.0 -10.5 4.5 59 59 A N T 3 S+ 0 0 65 1,-0.2 -29,-0.1 -2,-0.1 -1,-0.1 -0.496 116.3 90.1 -74.4 74.4 8.5 -10.5 1.0 60 60 A S T 3 S- 0 0 79 -2,-2.5 -1,-0.2 1,-0.1 -32,-0.2 0.316 86.7-124.3-145.9 -13.0 6.0 -13.3 0.1 61 61 A G < + 0 0 12 -3,-0.8 -3,-0.3 -34,-0.3 -1,-0.1 -0.277 48.0 135.9 80.9-173.6 2.9 -11.5 -1.3 62 62 A G E -B 24 0A 21 -38,-2.4 -38,-1.9 -36,-0.1 2,-0.2 -0.699 59.6 -22.0 127.2-175.3 -0.6 -12.0 0.3 63 63 A P E +B 23 0A 61 0, 0.0 2,-0.3 0, 0.0 -40,-0.2 -0.532 61.8 172.3 -68.2 136.7 -3.6 -9.8 1.3 64 64 A V E -B 22 0A 2 -42,-3.1 -42,-2.8 -2,-0.2 2,-0.4 -0.825 22.4-138.4-138.8 165.5 -2.8 -6.2 2.0 65 65 A R E -BD 21 98A 73 33,-2.4 33,-2.4 -2,-0.3 2,-0.3 -0.921 11.0-157.1-146.1 109.8 -5.1 -3.2 2.7 66 66 A V E -BD 20 97A 0 -46,-2.7 -46,-2.7 -2,-0.4 2,-0.4 -0.720 5.2-167.8 -92.4 137.2 -4.6 0.3 1.3 67 67 A Y E -BD 19 96A 85 29,-2.6 29,-2.1 -2,-0.3 -48,-0.3 -0.981 27.4-113.8-121.3 134.7 -6.0 3.5 2.9 68 68 A S E - D 0 95A 39 -50,-2.5 27,-0.3 -2,-0.4 -52,-0.1 -0.294 28.0-166.7 -60.1 148.8 -6.0 6.9 1.1 69 69 A L E - D 0 94A 20 25,-1.7 25,-1.3 -28,-0.1 3,-0.1 -0.990 22.0-119.7-136.2 134.0 -3.9 9.6 2.5 70 70 A P - 0 0 96 0, 0.0 23,-0.2 0, 0.0 25,-0.0 -0.065 53.1 -61.0 -62.6 175.7 -4.3 13.3 1.4 71 71 A G - 0 0 30 21,-0.4 2,-0.3 22,-0.1 21,-0.3 -0.340 64.1-174.7 -55.5 140.9 -1.5 15.2 -0.3 72 72 A R B -H 91 0D 124 19,-1.4 19,-0.6 -3,-0.1 2,-0.2 -0.895 16.1-174.5-140.4 166.2 1.6 15.6 1.9 73 73 A E + 0 0 103 -2,-0.3 16,-0.1 17,-0.2 14,-0.0 -0.816 59.7 60.3-148.2 173.5 5.0 17.4 1.9 74 74 A N S S+ 0 0 162 14,-0.3 -1,-0.1 -2,-0.2 15,-0.1 0.942 71.4 173.4 52.6 55.7 8.0 17.4 4.2 75 75 A Y - 0 0 31 13,-0.7 2,-0.2 -3,-0.1 12,-0.2 -0.246 20.4-139.6 -75.8 176.9 8.7 13.6 3.8 76 76 A S - 0 0 68 -38,-0.1 2,-0.4 10,-0.1 -39,-0.4 -0.739 12.1-120.3-129.8 172.8 11.7 11.6 5.1 77 77 A S + 0 0 66 -2,-0.2 2,-0.3 9,-0.2 9,-0.3 -0.985 40.2 158.1-121.3 129.8 13.9 8.8 3.8 78 78 A V E -G 85 0C 60 7,-1.5 7,-2.6 -2,-0.4 2,-0.3 -0.984 31.3-135.7-150.5 145.5 13.9 5.4 5.8 79 79 A D E +G 84 0C 81 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.815 23.1 176.2-103.8 145.8 14.8 1.8 4.9 80 80 A A - 0 0 26 3,-2.2 3,-0.3 -2,-0.3 -25,-0.1 -0.934 67.4 -10.6-149.4 133.6 12.6 -1.1 6.1 81 81 A N S S- 0 0 117 -2,-0.3 3,-0.1 1,-0.2 -22,-0.1 0.613 128.6 -54.0 54.0 23.6 13.0 -4.8 5.4 82 82 A G S S+ 0 0 52 1,-0.3 2,-0.3 -29,-0.1 -1,-0.2 0.907 114.4 112.9 78.0 44.9 15.7 -4.1 2.7 83 83 A I - 0 0 5 -3,-0.3 -3,-2.2 -30,-0.1 2,-0.5 -0.951 60.2-137.1-145.5 131.3 13.5 -1.6 0.7 84 84 A Q E - G 0 79C 90 -51,-0.4 -49,-2.3 -2,-0.3 2,-0.4 -0.796 11.8-163.9-103.5 127.1 14.4 2.1 0.6 85 85 A S E -fG 35 78C 0 -7,-2.6 -7,-1.5 -2,-0.5 2,-0.3 -0.910 13.9-164.1-104.6 137.4 11.8 4.9 1.0 86 86 A Q E -f 36 0C 65 -51,-1.5 -49,-0.5 -2,-0.4 -9,-0.2 -0.921 21.5-103.9-126.4 146.5 12.9 8.4 -0.1 87 87 A M - 0 0 116 -2,-0.3 2,-0.3 -51,-0.2 -10,-0.1 -0.143 35.1-154.9 -59.2 162.6 11.5 11.9 0.5 88 88 A L - 0 0 12 -52,-0.1 2,-1.3 3,-0.0 -13,-0.7 -0.969 24.6-108.2-137.2 161.2 9.5 13.8 -2.2 89 89 A S S S- 0 0 108 -2,-0.3 -16,-0.1 1,-0.2 -2,-0.0 -0.668 87.6 -46.7 -88.5 83.1 8.7 17.4 -3.1 90 90 A R - 0 0 151 -2,-1.3 2,-1.0 1,-0.2 -17,-0.2 0.968 64.6-165.2 61.3 62.1 5.0 17.7 -2.2 91 91 A W B -H 72 0D 100 -19,-0.6 -19,-1.4 -3,-0.2 2,-1.1 -0.733 6.3-158.6 -83.4 104.4 3.3 14.6 -3.7 92 92 A S S S+ 0 0 66 -2,-1.0 -21,-0.4 -21,-0.3 2,-0.2 -0.029 76.9 60.4 -78.8 35.5 -0.4 15.5 -3.6 93 93 A A + 0 0 26 -2,-1.1 -50,-2.4 -23,-0.2 2,-0.2 -0.753 66.9 142.3-159.5 106.8 -1.4 11.7 -3.8 94 94 A S E -CD 42 69A 7 -25,-1.3 -25,-1.7 -52,-0.3 2,-0.3 -0.824 23.2-164.6-135.6 177.7 -0.2 9.4 -1.0 95 95 A F E -CD 41 68A 1 -54,-1.9 -54,-2.8 -27,-0.3 2,-0.3 -0.943 15.3-137.6-153.7 171.6 -1.5 6.3 1.0 96 96 A T E - D 0 67A 28 -29,-2.1 -29,-2.6 -2,-0.3 2,-0.3 -0.977 25.4-144.0-135.1 133.9 -0.8 4.3 4.1 97 97 A V E + D 0 66A 1 -2,-0.3 -31,-0.2 -58,-0.3 2,-0.2 -0.778 24.2 160.1-106.9 156.1 -1.0 0.5 4.0 98 98 A T E - D 0 65A 24 -33,-2.4 -33,-2.4 -2,-0.3 2,-0.2 -0.767 36.6 -93.3-151.8-177.1 -2.2 -2.1 6.6 99 99 A L 0 0 89 -35,-0.2 -35,-0.1 -2,-0.2 -42,-0.0 -0.549 360.0 360.0-100.6 172.0 -3.5 -5.8 6.9 100 100 A E 0 0 163 -2,-0.2 -36,-0.0 -37,-0.2 -79,-0.0 -0.439 360.0 360.0 -90.3 360.0 -7.1 -7.0 6.8