==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 13-JUN-01 1JD8 . COMPND 2 MOLECULE: ACETYL GROUP; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1517.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 2 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 213 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.0 -9.4 -2.3 -3.1 2 3 A W 0 0 158 11,-0.1 11,-0.1 0, 0.0 8,-0.0 -0.998 360.0 360.0-138.2 137.8 -6.7 -0.8 -0.7 3 4 A G 0 0 66 -2,-0.3 9,-0.5 9,-0.2 0, 0.0 -0.421 360.0 360.0 -73.2 360.0 -5.6 2.9 -0.0 4 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 5 6 A S 0 0 120 0, 0.0 2,-0.1 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0 115.2 -0.2 5.0 2.4 6 7 A G - 0 0 74 1,-0.1 4,-0.1 2,-0.0 5,-0.0 -0.528 360.0 -88.0 178.3-106.8 3.2 3.6 3.7 7 8 A K S S+ 0 0 215 2,-0.7 -1,-0.1 -2,-0.1 3,-0.0 0.000 102.4 8.3-158.0 -84.6 6.8 4.1 2.4 8 9 A L S S+ 0 0 163 1,-0.1 2,-0.3 2,-0.0 -2,-0.0 0.908 125.2 47.3 -81.6 -46.0 8.2 1.7 -0.4 9 10 A I - 0 0 120 1,-0.1 -2,-0.7 2,-0.1 -1,-0.1 -0.793 63.6-159.8 -99.9 142.2 4.9 -0.3 -1.3 10 11 A D + 0 0 105 -2,-0.3 -1,-0.1 -4,-0.1 2,-0.1 0.964 65.6 84.8 -81.6 -58.0 1.5 1.5 -2.0 11 12 A T - 0 0 80 1,-0.1 2,-1.0 -5,-0.0 -8,-0.1 -0.245 62.5-154.9 -56.2 122.0 -1.2 -1.3 -1.4 12 13 A T 0 0 70 -9,-0.5 -9,-0.2 -2,-0.1 -1,-0.1 -0.706 360.0 360.0-100.2 79.8 -2.2 -1.8 2.3 13 14 A A 0 0 133 -2,-1.0 -11,-0.1 -11,-0.1 -2,-0.0 -0.750 360.0 360.0 -92.3 360.0 -3.3 -5.5 2.3