==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 14-JUN-01 1JDK . COMPND 2 MOLECULE: ACETYL GROUP; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.PHAN CHAN DU,D.LIMAL,V.SEMETEY,H.DALI,M.JOLIVET, . 13 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1452.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 4 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I 0 0 101 0, 0.0 2,-1.4 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 142.5 -0.5 3.2 2.6 2 3 A W + 0 0 267 1,-0.1 2,-0.0 2,-0.1 0, 0.0 -0.647 360.0 33.7 -91.5 84.0 -3.8 5.1 3.2 3 4 A G S S+ 0 0 75 -2,-1.4 2,-0.4 0, 0.0 -1,-0.1 -0.355 127.9 2.3 172.5 -80.0 -4.2 6.9 -0.2 4 5 A E S S+ 0 0 82 -2,-0.0 7,-1.2 2,-0.0 6,-0.5 -0.923 84.7 113.6-136.9 105.5 -2.8 4.9 -3.3 5 6 A S + 0 0 46 -2,-0.4 2,-1.0 5,-0.2 3,-0.2 0.108 8.7 143.3-136.0-109.9 -1.4 1.3 -2.5 6 7 A G S S+ 0 0 79 1,-0.2 -2,-0.0 2,-0.2 -1,-0.0 -0.670 85.1 30.3 99.2 -80.1 -2.8 -2.1 -3.7 7 8 A K S S- 0 0 199 -2,-1.0 -1,-0.2 0, 0.0 -2,-0.0 0.983 129.6 -62.6 -77.7 -68.7 0.4 -4.2 -4.4 8 9 A L S S- 0 0 138 -3,-0.2 2,-0.3 -7,-0.0 -2,-0.2 0.300 110.5 -0.7-147.5 -71.5 3.1 -2.8 -1.9 9 10 A I + 0 0 64 -4,-0.1 -4,-0.2 1,-0.1 -3,-0.0 -0.783 59.1 157.8-137.8 90.5 4.1 1.0 -2.3 10 11 A X S S+ 0 0 68 -6,-0.5 3,-0.5 -2,-0.3 -5,-0.2 0.862 74.4 51.7 -82.1 -38.6 2.3 2.9 -5.2 11 12 A T S S+ 0 0 82 -7,-1.2 2,-0.8 1,-0.3 -6,-0.1 0.984 123.4 26.2 -61.9 -60.4 2.7 6.6 -3.9 12 13 A T 0 0 105 1,-0.0 -1,-0.3 0, 0.0 -2,-0.1 -0.738 360.0 360.0-106.0 81.1 6.6 6.5 -3.3 13 14 A A 0 0 146 -2,-0.8 -3,-0.1 -3,-0.5 -2,-0.0 -0.637 360.0 360.0 -89.1 360.0 7.7 3.7 -5.8