==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=13-NOV-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 18-JUN-01 1JEK . COMPND 2 MOLECULE: ENV POLYPROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR V.N.MALASHKEVICH,M.SINGH,P.S.KIM . 74 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6062.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 89.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 66 89.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 546 A Q > 0 0 176 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -46.8 1.3 22.7 39.8 2 547 A S H > + 0 0 26 2,-0.2 4,-2.3 1,-0.2 68,-0.3 0.877 360.0 49.5 -68.2 -32.4 -1.8 22.4 37.5 3 548 A L H > S+ 0 0 117 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.910 110.2 51.1 -72.8 -36.1 -1.3 25.9 36.0 4 549 A A H > S+ 0 0 60 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.922 110.4 50.5 -63.9 -39.0 2.4 25.1 35.3 5 550 A N H X S+ 0 0 73 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.907 110.5 48.5 -62.5 -44.0 1.2 21.9 33.6 6 551 A A H X S+ 0 0 2 -4,-2.3 4,-2.3 60,-0.3 -1,-0.2 0.895 110.7 51.1 -64.3 -37.9 -1.3 23.8 31.5 7 552 A T H X S+ 0 0 80 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.910 109.9 49.4 -67.7 -37.6 1.3 26.4 30.6 8 553 A A H X S+ 0 0 55 -4,-2.4 4,-1.8 2,-0.2 -1,-0.2 0.885 109.3 52.5 -67.0 -38.1 3.7 23.6 29.5 9 554 A A H X S+ 0 0 4 -4,-2.2 4,-1.6 1,-0.2 54,-0.2 0.904 109.2 49.4 -64.6 -39.7 1.0 22.1 27.4 10 555 A Q H X S+ 0 0 97 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.871 104.8 59.1 -65.9 -34.7 0.4 25.4 25.7 11 556 A Q H X S+ 0 0 93 -4,-1.9 4,-2.4 1,-0.2 -1,-0.2 0.906 102.8 52.5 -61.6 -39.1 4.1 25.6 25.1 12 557 A E H X S+ 0 0 107 -4,-1.8 4,-2.4 1,-0.2 -1,-0.2 0.900 108.9 50.5 -64.0 -37.6 3.9 22.4 23.1 13 558 A V H X S+ 0 0 20 -4,-1.6 4,-2.8 46,-0.2 5,-0.3 0.924 109.3 51.1 -63.4 -44.5 1.1 23.9 21.0 14 559 A L H X S+ 0 0 108 -4,-2.5 4,-2.0 2,-0.2 -2,-0.2 0.918 111.2 47.3 -59.0 -42.1 3.2 27.0 20.4 15 560 A E H X S+ 0 0 116 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.932 115.9 44.6 -66.1 -44.5 6.2 24.9 19.2 16 561 A A H X S+ 0 0 18 -4,-2.4 4,-2.1 2,-0.2 -2,-0.2 0.868 110.7 53.3 -69.3 -35.7 3.9 22.8 16.9 17 562 A S H X S+ 0 0 49 -4,-2.8 4,-2.7 2,-0.2 5,-0.2 0.923 108.9 50.7 -65.4 -41.5 2.0 25.8 15.5 18 563 A Y H X S+ 0 0 145 -4,-2.0 4,-2.6 -5,-0.3 -2,-0.2 0.938 109.4 50.0 -61.9 -43.5 5.3 27.4 14.6 19 564 A A H X S+ 0 0 34 -4,-2.1 4,-1.6 1,-0.2 -1,-0.2 0.887 112.2 48.1 -63.2 -37.3 6.5 24.2 12.8 20 565 A M H X S+ 0 0 22 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.902 110.3 51.2 -68.8 -39.8 3.2 24.1 10.9 21 566 A V H X S+ 0 0 81 -4,-2.7 4,-2.4 1,-0.2 -2,-0.2 0.906 108.2 52.5 -64.2 -40.2 3.4 27.8 9.9 22 567 A Q H X S+ 0 0 97 -4,-2.6 4,-2.2 1,-0.2 -1,-0.2 0.899 108.8 50.5 -60.8 -38.9 6.9 27.2 8.7 23 568 A H H X S+ 0 0 14 -4,-1.6 4,-1.9 1,-0.2 -2,-0.2 0.889 108.7 51.9 -66.7 -36.9 5.5 24.3 6.5 24 569 A I H X S+ 0 0 66 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.913 108.1 51.2 -64.8 -40.3 2.9 26.6 5.2 25 570 A A H X S+ 0 0 33 -4,-2.4 4,-2.0 1,-0.2 -1,-0.2 0.893 107.6 53.6 -64.1 -39.4 5.5 29.2 4.2 26 571 A K H X S+ 0 0 99 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.889 106.9 52.2 -60.7 -40.1 7.4 26.4 2.5 27 572 A G H X S+ 0 0 2 -4,-1.9 4,-2.5 1,-0.2 -1,-0.2 0.890 107.8 50.2 -64.5 -40.5 4.3 25.6 0.5 28 573 A I H X S+ 0 0 112 -4,-1.9 4,-2.5 1,-0.2 -1,-0.2 0.890 111.6 49.5 -65.1 -37.3 3.8 29.2 -0.7 29 574 A R H X S+ 0 0 164 -4,-2.0 4,-1.8 2,-0.2 -2,-0.2 0.900 109.8 50.2 -70.4 -38.8 7.5 29.3 -1.8 30 575 A I H X S+ 0 0 58 -4,-2.4 4,-1.3 1,-0.2 -2,-0.2 0.935 114.4 45.7 -62.8 -43.8 7.1 26.0 -3.7 31 576 A L H X S+ 0 0 76 -4,-2.5 4,-2.6 1,-0.2 -2,-0.2 0.884 107.1 56.9 -71.2 -36.4 4.0 27.4 -5.4 32 577 A E H X S+ 0 0 113 -4,-2.5 4,-2.6 1,-0.2 -1,-0.2 0.889 104.6 53.2 -62.4 -35.1 5.6 30.8 -6.2 33 578 A A H X S+ 0 0 51 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.877 109.5 48.8 -65.9 -35.8 8.4 29.1 -8.1 34 579 A R H X S+ 0 0 128 -4,-1.3 4,-1.9 2,-0.2 -2,-0.2 0.914 110.7 50.5 -70.2 -38.3 5.7 27.2 -10.1 35 580 A V H X S+ 0 0 67 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.925 107.4 53.6 -65.9 -39.9 3.9 30.5 -10.8 36 581 A A H X S+ 0 0 37 -4,-2.6 4,-1.8 1,-0.2 -1,-0.2 0.883 107.7 51.8 -63.0 -35.5 7.2 32.2 -11.9 37 582 A R H < S+ 0 0 192 -4,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.915 110.3 47.1 -66.9 -41.1 7.7 29.3 -14.4 38 583 A V H < S+ 0 0 125 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.881 110.2 53.5 -69.3 -34.5 4.2 29.8 -15.9 39 584 A E H < 0 0 145 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.882 360.0 360.0 -64.9 -36.8 4.8 33.5 -16.1 40 585 A A < 0 0 114 -4,-1.8 -3,-0.0 -5,-0.2 0, 0.0 -0.284 360.0 360.0 -66.5 360.0 8.0 32.9 -18.0 41 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 628 B W > 0 0 110 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -38.2 3.1 18.9 -3.9 43 629 B Q H > + 0 0 147 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.899 360.0 48.4 -59.2 -38.1 1.7 15.5 -2.8 44 630 B Q H > S+ 0 0 102 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.889 109.0 52.7 -69.0 -38.8 4.5 15.3 -0.1 45 631 B W H > S+ 0 0 31 1,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.934 111.3 48.0 -62.6 -41.9 3.6 18.9 1.0 46 632 B E H X S+ 0 0 72 -4,-2.7 4,-2.2 2,-0.2 -2,-0.2 0.923 110.3 49.5 -64.0 -47.2 -0.0 17.8 1.4 47 633 B E H X S+ 0 0 78 -4,-2.7 4,-1.6 1,-0.2 -1,-0.2 0.938 113.4 48.5 -58.7 -42.6 0.8 14.7 3.3 48 634 B E H X S+ 0 0 52 -4,-2.6 4,-2.3 1,-0.2 -2,-0.2 0.892 108.1 51.6 -67.5 -39.3 3.0 16.7 5.6 49 635 B I H X S+ 0 0 18 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.899 108.1 53.8 -67.0 -32.4 0.5 19.5 6.3 50 636 B E H X S+ 0 0 124 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.880 108.7 49.3 -66.1 -36.4 -2.1 16.8 7.2 51 637 B Q H X S+ 0 0 133 -4,-1.6 4,-2.3 2,-0.2 5,-0.2 0.897 110.4 50.3 -68.6 -41.3 0.4 15.4 9.7 52 638 B H H X S+ 0 0 55 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.922 111.8 48.4 -61.4 -42.8 1.0 18.8 11.2 53 639 B E H X S+ 0 0 101 -4,-2.5 4,-2.7 2,-0.2 5,-0.2 0.934 110.7 49.9 -65.0 -45.6 -2.7 19.4 11.5 54 640 B G H X S+ 0 0 40 -4,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.935 115.1 43.0 -58.8 -46.9 -3.4 16.0 13.2 55 641 B N H X S+ 0 0 84 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.901 113.6 51.1 -68.9 -39.0 -0.7 16.5 15.7 56 642 B L H X S+ 0 0 23 -4,-2.7 4,-2.5 -5,-0.2 -2,-0.2 0.926 108.8 51.8 -66.0 -39.6 -1.6 20.2 16.4 57 643 B S H X S+ 0 0 69 -4,-2.7 4,-2.3 1,-0.2 -1,-0.2 0.922 110.4 49.3 -61.1 -40.1 -5.3 19.3 16.9 58 644 B L H X S+ 0 0 115 -4,-1.9 4,-2.1 -5,-0.2 -1,-0.2 0.910 112.6 46.9 -65.4 -43.3 -4.2 16.6 19.5 59 645 B L H X S+ 0 0 28 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.843 110.6 52.4 -69.0 -35.1 -1.9 19.1 21.3 60 646 B L H X S+ 0 0 93 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.901 109.1 49.9 -65.0 -43.9 -4.6 21.7 21.4 61 647 B R H X S+ 0 0 163 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.927 111.8 47.9 -61.4 -43.6 -7.1 19.3 22.9 62 648 B E H X S+ 0 0 88 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.911 112.4 49.2 -65.5 -41.3 -4.6 18.3 25.6 63 649 B A H X S+ 0 0 5 -4,-2.3 4,-2.8 -54,-0.2 5,-0.2 0.953 109.4 51.7 -62.7 -44.7 -3.8 21.9 26.4 64 650 B A H X S+ 0 0 60 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.893 110.7 49.2 -57.4 -41.3 -7.5 22.8 26.6 65 651 B L H X S+ 0 0 75 -4,-2.3 4,-2.1 1,-0.2 -1,-0.2 0.920 112.4 46.6 -63.2 -47.8 -8.0 19.9 29.1 66 652 B Q H X S+ 0 0 39 -4,-2.4 4,-2.2 2,-0.2 -60,-0.3 0.865 110.2 53.4 -63.6 -37.2 -5.1 21.0 31.2 67 653 B V H X S+ 0 0 39 -4,-2.8 4,-2.5 1,-0.2 -2,-0.2 0.929 108.2 51.2 -63.2 -41.0 -6.3 24.6 31.1 68 654 B H H X S+ 0 0 104 -4,-2.3 4,-2.6 -5,-0.2 -2,-0.2 0.928 108.7 50.7 -61.0 -44.1 -9.7 23.4 32.4 69 655 B I H X S+ 0 0 84 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.917 111.6 47.6 -60.6 -43.4 -8.1 21.5 35.2 70 656 B A H X S+ 0 0 5 -4,-2.2 4,-2.4 -68,-0.3 -1,-0.2 0.889 111.0 51.3 -66.6 -38.5 -6.1 24.5 36.3 71 657 B Q H X S+ 0 0 132 -4,-2.5 4,-1.2 1,-0.2 -2,-0.2 0.915 111.1 48.1 -64.0 -40.3 -9.2 26.7 36.1 72 658 B R H < S+ 0 0 173 -4,-2.6 3,-0.3 1,-0.2 -2,-0.2 0.893 110.4 51.2 -68.8 -37.2 -11.1 24.3 38.3 73 659 B D H < S+ 0 0 98 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.928 110.0 50.1 -66.0 -40.6 -8.3 24.1 40.8 74 660 B A H < 0 0 92 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.742 360.0 360.0 -70.7 -21.7 -8.1 27.9 41.1 75 661 B R < 0 0 254 -4,-1.2 -1,-0.2 -3,-0.3 -2,-0.1 -0.040 360.0 360.0 -74.3 360.0 -11.8 28.3 41.6