==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 22-JUN-01 1JFW . COMPND 2 MOLECULE: TAT PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.M.PELOPONESE,C.GREGOIRE,S.OPI,D.ESQUIEU . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5568.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 46.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 26 30.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 127 0, 0.0 3,-0.4 0, 0.0 45,-0.1 0.000 360.0 360.0 360.0 162.5 8.6 2.9 0.6 2 2 A E + 0 0 35 43,-0.3 2,-1.7 1,-0.2 3,-0.3 0.999 360.0 39.1 -79.5 -70.6 9.3 2.0 -3.1 3 3 A P S S+ 0 0 1 0, 0.0 42,-0.4 0, 0.0 -1,-0.2 -0.323 79.6 119.1 -82.8 65.0 6.1 2.6 -5.5 4 4 A V + 0 0 37 -2,-1.7 41,-0.2 -3,-0.4 12,-0.1 0.949 52.8 66.7 -90.3 -60.2 4.8 5.8 -3.8 5 5 A D S S- 0 0 37 -3,-0.3 2,-1.6 10,-0.1 10,-0.1 -0.502 86.9-119.8 -70.8 128.7 4.9 8.6 -6.5 6 6 A P S S+ 0 0 8 0, 0.0 62,-0.5 0, 0.0 61,-0.3 -0.413 73.2 107.3 -79.7 81.1 2.2 8.1 -9.4 7 7 A R + 0 0 42 -2,-1.6 2,-0.4 47,-0.2 -2,-0.1 -0.447 38.8 158.5-147.2 72.5 4.3 7.8 -12.8 8 8 A L - 0 0 3 5,-0.1 5,-0.1 1,-0.1 3,-0.1 -0.802 41.1-151.9 -98.1 136.4 4.5 4.2 -14.2 9 9 A E S S+ 0 0 134 -2,-0.4 2,-1.3 1,-0.2 -1,-0.1 0.930 105.8 56.8 -63.6 -43.2 5.2 3.0 -17.7 10 10 A P S S- 0 0 66 0, 0.0 2,-0.9 0, 0.0 -1,-0.2 -0.692 105.3-150.8 -74.6 87.8 2.9 -0.2 -16.8 11 11 A W + 0 0 63 -2,-1.3 -2,-0.1 1,-0.1 32,-0.0 -0.581 60.0 98.1 -90.0 104.4 0.1 2.3 -16.0 12 12 A K + 0 0 70 -2,-0.9 31,-0.5 27,-0.0 30,-0.1 -0.184 51.5 117.1-150.5 64.3 -2.7 1.9 -13.4 13 13 A H + 0 0 0 1,-0.1 54,-0.2 -5,-0.1 -5,-0.1 -0.667 21.0 162.4-129.0 81.6 -1.3 3.9 -10.3 14 14 A P + 0 0 0 0, 0.0 2,-1.0 0, 0.0 -1,-0.1 0.883 32.3 173.5 -62.6 -36.4 -3.3 7.1 -9.0 15 15 A G - 0 0 0 28,-0.3 2,-0.1 22,-0.2 -10,-0.1 -0.531 45.2 -26.9 87.9 -98.6 -1.3 6.7 -5.7 16 16 A S S S+ 0 0 32 -2,-1.0 3,-0.1 -12,-0.1 7,-0.1 -0.600 82.6 110.0-165.6 95.5 -1.8 9.6 -3.1 17 17 A Q S S+ 0 0 61 -2,-0.1 2,-1.6 5,-0.1 -2,-0.1 0.424 91.6 36.9-134.8 -62.7 -2.8 13.2 -4.0 18 18 A P S S- 0 0 17 0, 0.0 6,-2.6 0, 0.0 2,-0.5 -0.617 100.6-164.3 -74.3 78.5 -6.5 13.7 -2.7 19 19 A K + 0 0 152 -2,-1.6 4,-0.2 4,-0.2 -3,-0.1 -0.561 43.2 98.5 -85.4 115.1 -5.2 11.4 0.2 20 20 A T S S+ 0 0 77 -2,-0.5 2,-1.6 2,-0.1 -1,-0.1 0.077 90.7 24.8-149.5 -82.0 -7.9 9.7 2.6 21 21 A A S S- 0 0 25 1,-0.1 2,-1.8 3,-0.0 19,-0.2 -0.528 137.8 -68.0 -83.7 67.7 -8.8 6.0 1.9 22 22 A C S S- 0 0 19 -2,-1.6 2,-0.3 17,-0.1 3,-0.1 -0.568 123.4 -3.2 60.3 -70.2 -5.3 5.8 0.3 23 23 A T S S+ 0 0 0 -2,-1.8 57,-0.3 1,-0.3 -4,-0.2 -0.917 126.8 10.1-150.7 118.9 -6.7 8.2 -2.6 24 24 A T + 0 0 0 -6,-2.6 -1,-0.3 -2,-0.3 2,-0.3 0.700 65.7 163.5 79.1 119.0 -10.4 9.5 -2.9 25 25 A C B > +A 30 0A 15 5,-1.6 5,-1.7 10,-0.2 4,-0.4 -0.996 45.3 21.4-156.0 160.3 -13.1 9.1 -0.1 26 26 A Y T 5S- 0 0 154 8,-1.8 2,-1.8 -2,-0.3 8,-0.3 0.108 75.9-124.2 78.6 -24.2 -16.6 10.3 1.2 27 27 A C T >S+ 0 0 71 6,-1.6 5,-0.6 3,-0.3 -1,-0.1 -0.450 108.2 49.3 75.3 -64.6 -18.1 11.8 -2.1 28 28 A K T 5S+ 0 0 194 -2,-1.8 -1,-0.2 3,-0.1 -2,-0.1 0.621 121.3 30.2 -73.6 -17.5 -18.7 15.3 -0.4 29 29 A K T 5S+ 0 0 164 -4,-0.4 2,-0.9 1,-0.1 -3,-0.2 0.824 115.5 36.6-108.5 -69.9 -15.1 15.7 1.1 30 30 A C B > S+ 0 0 92 1,-0.2 4,-2.4 -24,-0.1 3,-0.7 -0.305 74.3 70.5 67.9 -53.9 -7.6 1.3 -7.9 39 39 A T T 34 S+ 0 0 0 -2,-2.2 -1,-0.2 1,-0.2 -17,-0.1 0.876 89.3 63.6 -47.1 -43.2 -4.0 1.7 -6.6 40 40 A T T 34 S+ 0 0 62 1,-0.2 8,-0.3 -19,-0.2 -1,-0.2 0.791 116.5 26.6 -57.2 -35.2 -5.0 -0.2 -3.3 41 41 A K T <4 S+ 0 0 192 -3,-0.7 -2,-0.2 6,-0.2 -1,-0.2 0.864 135.0 21.2 -89.5 -50.9 -5.7 -3.5 -5.3 42 42 A A S < S+ 0 0 25 -4,-2.4 7,-1.2 1,-0.2 2,-0.4 0.959 120.6 3.1 -91.0 -63.1 -3.5 -3.3 -8.5 43 43 A L E S+B 48 0B 8 -31,-0.5 -28,-0.3 -5,-0.4 2,-0.3 -0.941 85.6 62.5-142.5 114.6 -0.3 -0.9 -8.4 44 44 A G E > S-B 47 0B 3 3,-1.0 3,-2.3 -2,-0.4 6,-0.2 -0.991 81.1 -6.3 163.8-163.7 1.1 1.3 -5.5 45 45 A I T 3 S- 0 0 37 -42,-0.4 -43,-0.3 1,-0.3 -41,-0.1 0.607 132.4 -22.0 -24.1 -69.5 2.7 1.8 -2.0 46 46 A S T 3 S+ 0 0 80 -44,-0.1 2,-0.4 -45,-0.1 -1,-0.3 -0.430 112.1 126.6-130.9 61.1 2.5 -1.8 -0.7 47 47 A Y E X S-B 44 0B 57 -3,-2.3 2,-1.4 3,-0.2 -3,-1.0 -0.963 74.0 -39.0-135.5 121.1 -0.4 -2.9 -3.1 48 48 A G E 3 S+B 43 0B 65 -2,-0.4 -5,-0.2 -8,-0.3 -6,-0.1 -0.470 143.0 26.4 71.9 -87.3 -0.8 -5.9 -5.7 49 49 A R T 3 S- 0 0 158 -2,-1.4 2,-2.3 -7,-1.2 -1,-0.3 0.635 92.6-165.0 -73.1 -20.0 2.8 -6.0 -7.2 50 50 A K S < S+ 0 0 147 -3,-0.9 2,-0.2 -6,-0.2 -48,-0.2 -0.258 71.1 41.7 68.5 -56.9 4.1 -4.5 -3.8 51 51 A K + 0 0 131 -2,-2.3 2,-0.5 -49,-0.1 -1,-0.1 -0.586 65.8 164.5-123.9 74.9 7.7 -3.4 -4.9 52 52 A R - 0 0 71 -2,-0.2 2,-1.7 -8,-0.2 -2,-0.0 -0.767 37.6-133.0 -84.5 122.0 7.5 -1.7 -8.4 53 53 A R + 0 0 188 -2,-0.5 2,-0.3 -50,-0.1 -1,-0.1 -0.469 66.5 94.6 -86.5 73.8 10.8 0.2 -9.0 54 54 A Q + 0 0 32 -2,-1.7 -47,-0.2 -52,-0.1 -2,-0.1 -0.926 18.2 138.7-163.4 131.3 9.6 3.6 -10.3 55 55 A R + 0 0 107 -2,-0.3 -1,-0.0 -52,-0.1 -2,-0.0 0.406 20.1 168.6-137.2 -67.9 8.8 7.2 -8.9 56 56 A R - 0 0 153 1,-0.2 0, 0.0 2,-0.1 0, 0.0 0.765 63.9 -67.9 63.3 41.9 10.3 9.9 -11.4 57 57 A R + 0 0 144 2,-0.1 3,-0.2 1,-0.1 -1,-0.2 0.841 64.3 162.9 52.4 54.0 8.8 13.4 -10.3 58 58 A P + 0 0 2 0, 0.0 2,-1.9 0, 0.0 5,-0.1 0.901 65.5 62.2 -68.2 -44.4 4.9 13.4 -11.0 59 59 A P + 0 0 56 0, 0.0 2,-1.4 0, 0.0 5,-0.1 -0.321 66.5 153.3 -78.9 61.7 3.5 16.5 -8.8 60 60 A Q S S- 0 0 116 -2,-1.9 3,-0.1 -3,-0.2 2,-0.0 -0.504 74.7 -19.9 -95.7 69.4 5.7 19.0 -10.8 61 61 A G S S- 0 0 76 -2,-1.4 -1,-0.1 1,-0.1 25,-0.1 -0.432 127.5 -13.6 133.3 -69.9 3.6 22.2 -10.4 62 62 A S S S- 0 0 63 1,-0.2 2,-0.3 -2,-0.0 -1,-0.1 0.584 103.1 -1.6-140.1 -79.5 -0.0 21.5 -9.3 63 63 A Q - 0 0 65 1,-0.1 22,-0.7 -5,-0.1 -1,-0.2 -0.991 29.2-177.3-142.7 145.6 -2.0 18.1 -9.4 64 64 A T + 0 0 6 -2,-0.3 2,-0.5 20,-0.1 -1,-0.1 0.842 23.9 150.3-103.5 -56.2 -1.6 14.4 -10.4 65 65 A H S S- 0 0 7 1,-0.2 2,-0.2 -51,-0.1 -1,-0.1 -0.335 90.0 -23.5 50.9 -98.9 -5.0 12.4 -9.8 66 66 A Q S S+ 0 0 4 -2,-0.5 8,-0.3 14,-0.2 -1,-0.2 -0.705 110.2 105.1-133.5 84.1 -4.5 9.7 -12.6 67 67 A V - 0 0 3 -61,-0.3 4,-0.2 -2,-0.2 -2,-0.1 0.710 50.9-157.1-120.2 -70.9 -2.0 11.3 -15.2 68 68 A S - 0 0 18 -62,-0.5 2,-0.4 -55,-0.1 3,-0.4 0.836 51.4 -91.2 64.7 104.5 1.7 10.2 -15.4 69 69 A L S S+ 0 0 29 1,-0.2 -1,-0.1 -11,-0.0 3,-0.0 -0.192 102.4 78.5 -62.5 101.6 3.5 13.3 -17.1 70 70 A S S S+ 0 0 97 -2,-0.4 2,-0.6 -3,-0.0 -1,-0.2 -0.022 102.3 11.3-163.6 -92.1 3.3 12.6 -20.9 71 71 A K S S- 0 0 173 -3,-0.4 0, 0.0 -4,-0.2 0, 0.0 -0.934 82.0-144.5-103.0 103.6 -0.1 13.2 -22.8 72 72 A Q S S+ 0 0 44 -2,-0.6 2,-1.5 1,-0.2 -1,-0.1 0.783 87.9 58.3 -52.9 -48.9 -1.8 15.2 -19.9 73 73 A P S S- 0 0 106 0, 0.0 2,-2.1 0, 0.0 -1,-0.2 -0.577 82.9-160.7 -71.6 85.6 -5.6 13.9 -20.3 74 74 A T - 0 0 31 -2,-1.5 2,-1.2 -8,-0.3 -2,-0.1 -0.359 42.7 -85.9 -80.5 74.1 -4.6 10.2 -19.9 75 75 A S S S- 0 0 97 -2,-2.1 -1,-0.1 2,-0.1 -8,-0.0 -0.506 100.2 -11.6 64.9 -89.5 -7.6 8.3 -21.5 76 76 A Q S S- 0 0 129 -2,-1.2 2,-1.4 -10,-0.0 7,-0.1 -0.997 72.2-112.8-135.5 141.7 -10.1 8.1 -18.4 77 77 A P - 0 0 57 0, 0.0 2,-1.4 0, 0.0 -2,-0.1 -0.521 35.1-173.8 -77.4 90.2 -9.3 8.9 -14.6 78 78 A R S S+ 0 0 93 -2,-1.4 2,-0.0 -12,-0.1 -2,-0.0 -0.597 72.0 5.5 -89.6 83.3 -9.7 5.3 -13.2 79 79 A G S S+ 0 0 0 -2,-1.4 -42,-0.2 -41,-0.1 -55,-0.1 0.292 127.9 43.6 97.1 120.8 -9.3 6.1 -9.4 80 80 A D S S- 0 0 0 -44,-1.2 2,-1.9 -57,-0.3 -14,-0.2 0.965 85.0-140.0 69.2 80.5 -9.0 9.8 -8.4 81 81 A P S S+ 0 0 30 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.395 77.3 56.3 -83.5 74.8 -11.9 11.3 -10.8 82 82 A T S S- 0 0 69 -2,-1.9 -17,-0.1 -50,-0.0 -2,-0.0 0.052 71.2-157.2-151.8 -83.2 -10.5 14.6 -12.1 83 83 A G + 0 0 5 -7,-0.1 -16,-0.1 -3,-0.1 2,-0.1 -0.989 43.7 2.8 126.9-140.4 -7.0 14.6 -14.0 84 84 A P + 0 0 46 0, 0.0 -20,-0.1 0, 0.0 -19,-0.0 -0.307 22.1 179.6 -70.1 161.1 -4.4 17.5 -14.5 85 85 A K 0 0 143 -22,-0.7 -21,-0.1 1,-0.1 -2,-0.0 -0.159 360.0 360.0-135.9 53.2 -4.0 21.1 -13.6 86 86 A E 0 0 90 -23,-0.1 -1,-0.1 -24,-0.1 -25,-0.1 -0.949 360.0 360.0-154.8 360.0 -0.6 21.5 -15.4