==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JUN-01 1JH4 . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.KOZLOV,N.SIDDIQUI,S.COILLET-MATILLON,I.EKIEL,K.GEHRING . 120 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8820.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 14.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 29.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-105.7 -6.9 -23.3 -5.8 2 2 A P - 0 0 131 0, 0.0 2,-0.4 0, 0.0 0, 0.0 -0.377 360.0-106.9 -70.2 146.3 -4.1 -20.9 -4.8 3 3 A L - 0 0 132 1,-0.2 0, 0.0 -2,-0.1 0, 0.0 -0.588 32.7-172.0 -76.4 127.2 -3.5 -17.8 -6.9 4 4 A G S S+ 0 0 69 -2,-0.4 -1,-0.2 1,-0.2 0, 0.0 0.945 72.4 11.3 -81.0 -84.0 -0.3 -18.1 -9.0 5 5 A S S S- 0 0 103 2,-0.0 2,-1.0 1,-0.0 -1,-0.2 -0.779 76.8-141.9-101.9 90.3 0.5 -14.7 -10.6 6 6 A P - 0 0 76 0, 0.0 2,-0.2 0, 0.0 -3,-0.0 -0.279 24.9-164.3 -53.1 91.7 -1.8 -12.1 -9.0 7 7 A L - 0 0 99 -2,-1.0 4,-0.4 1,-0.1 -3,-0.0 -0.595 17.3-157.0 -83.6 141.9 -2.6 -10.1 -12.2 8 8 A T S > S+ 0 0 47 -2,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.848 89.3 53.5 -86.9 -37.6 -4.0 -6.6 -11.7 9 9 A A H >> S+ 0 0 71 1,-0.2 4,-1.3 2,-0.2 3,-1.1 0.995 117.0 35.1 -58.1 -69.4 -5.6 -6.3 -15.2 10 10 A S H 34 S+ 0 0 75 1,-0.3 -1,-0.2 2,-0.2 -2,-0.2 0.747 109.8 67.9 -57.9 -24.5 -7.6 -9.5 -15.0 11 11 A M H >4 S+ 0 0 37 -4,-0.4 3,-0.9 2,-0.2 -1,-0.3 0.915 99.9 49.4 -63.1 -40.3 -8.1 -8.9 -11.3 12 12 A L H X< S+ 0 0 34 -4,-1.7 3,-1.6 -3,-1.1 -2,-0.2 0.972 112.7 44.1 -60.8 -56.3 -10.3 -5.9 -12.1 13 13 A A T 3< S+ 0 0 91 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.380 101.8 75.5 -71.0 7.3 -12.4 -7.9 -14.6 14 14 A S T < S+ 0 0 94 -3,-0.9 -1,-0.3 -5,-0.2 -2,-0.2 0.279 89.7 64.7-100.9 8.5 -12.5 -10.6 -12.0 15 15 A A S < S- 0 0 20 -3,-1.6 7,-0.0 1,-0.2 6,-0.0 -0.974 90.3 -93.9-134.7 148.0 -15.0 -8.8 -9.8 16 16 A P - 0 0 80 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.282 57.2 -77.9 -44.3 179.7 -18.7 -7.7 -10.2 17 17 A P S > S+ 0 0 86 0, 0.0 3,-0.6 0, 0.0 101,-0.2 0.962 130.1 30.8 -48.9 -80.7 -19.7 -4.3 -11.5 18 18 A Q T 3 S+ 0 0 83 1,-0.3 2,-0.2 2,-0.1 3,-0.1 0.702 107.3 77.6 -56.7 -18.1 -19.3 -2.0 -8.5 19 19 A E T 3 + 0 0 55 1,-0.1 4,-0.4 2,-0.1 -1,-0.3 -0.026 66.7 109.9 -84.2 36.7 -16.4 -4.3 -7.4 20 20 A Q S < S+ 0 0 50 -3,-0.6 3,-0.5 -2,-0.2 4,-0.3 0.946 93.5 7.7 -70.0 -89.7 -14.2 -2.7 -10.1 21 21 A K S S+ 0 0 25 95,-0.3 94,-0.8 1,-0.2 -1,-0.2 0.197 108.6 102.7 -79.1 17.0 -11.6 -0.6 -8.2 22 22 A Q S > S+ 0 0 61 92,-0.3 3,-0.7 -4,-0.1 -1,-0.2 0.988 82.5 34.4 -64.5 -62.9 -12.9 -2.3 -5.0 23 23 A M T 3 S+ 0 0 93 -3,-0.5 2,-3.9 -4,-0.4 -2,-0.1 0.952 125.2 34.8 -56.9 -91.2 -10.2 -4.8 -4.4 24 24 A L T 3 S- 0 0 6 -4,-0.3 -1,-0.3 -16,-0.1 5,-0.3 -0.196 104.9-128.0 -63.0 56.8 -6.9 -3.2 -5.7 25 25 A G < - 0 0 0 -2,-3.9 91,-0.2 -3,-0.7 -1,-0.1 0.153 57.9 -43.7 28.7-143.2 -8.1 0.2 -4.5 26 26 A E S S- 0 0 7 18,-0.1 -2,-0.1 89,-0.1 90,-0.1 0.958 106.1 -52.0 -73.9 -84.6 -7.8 2.8 -7.2 27 27 A R S > S+ 0 0 79 17,-0.1 4,-1.0 2,-0.1 -2,-0.1 0.209 115.1 90.2-142.9 10.9 -4.4 2.2 -8.9 28 28 A L H > S+ 0 0 1 2,-0.2 4,-4.2 1,-0.1 5,-0.4 0.908 77.9 62.2 -79.9 -43.4 -1.9 2.2 -6.1 29 29 A F H > S+ 0 0 46 -5,-0.3 4,-3.8 1,-0.2 5,-0.2 0.913 106.4 48.2 -48.0 -47.1 -2.0 -1.5 -5.3 30 30 A P H > S+ 0 0 23 0, 0.0 4,-1.2 0, 0.0 -1,-0.2 0.911 116.4 43.2 -59.7 -44.0 -0.7 -2.2 -8.8 31 31 A L H X S+ 0 0 17 -4,-1.0 4,-0.7 2,-0.2 3,-0.3 0.934 118.7 42.4 -68.4 -46.9 2.0 0.4 -8.4 32 32 A I H >X S+ 0 0 0 -4,-4.2 4,-4.0 1,-0.2 3,-1.7 0.921 104.9 65.2 -66.9 -40.8 2.9 -0.6 -4.9 33 33 A Q H 3< S+ 0 0 56 -4,-3.8 -1,-0.2 -5,-0.4 -2,-0.2 0.884 97.0 58.4 -45.2 -42.7 2.7 -4.3 -5.9 34 34 A A H 3< S+ 0 0 78 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.836 122.8 22.1 -56.9 -36.9 5.7 -3.4 -8.1 35 35 A M H << S- 0 0 135 -3,-1.7 -2,-0.2 -4,-0.7 -1,-0.1 0.861 79.0-169.8 -98.9 -50.5 7.7 -2.4 -5.1 36 36 A H < + 0 0 107 -4,-4.0 -3,-0.1 -7,-0.1 -4,-0.1 0.926 24.0 155.5 58.3 49.7 6.0 -4.2 -2.2 37 37 A P S S- 0 0 57 0, 0.0 3,-0.1 0, 0.0 -4,-0.0 0.998 76.6 -11.4 -66.9 -74.8 7.8 -2.3 0.6 38 38 A T S S- 0 0 48 1,-0.1 2,-0.2 2,-0.0 35,-0.0 0.908 129.8 -33.2 -92.6 -61.0 5.5 -2.6 3.5 39 39 A L > - 0 0 102 1,-0.1 4,-4.3 2,-0.0 5,-0.3 -0.667 41.6-152.5-170.4 109.5 2.2 -3.9 2.2 40 40 A A H > S+ 0 0 3 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.924 99.7 47.6 -48.4 -56.7 0.6 -3.3 -1.3 41 41 A G H > S+ 0 0 18 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.931 121.4 35.5 -53.0 -52.0 -3.0 -3.8 -0.0 42 42 A K H > S+ 0 0 48 2,-0.2 4,-1.2 1,-0.2 3,-0.3 0.871 111.0 61.0 -72.7 -38.2 -2.5 -1.6 3.0 43 43 A I H >X S+ 0 0 1 -4,-4.3 4,-2.4 1,-0.2 3,-0.8 0.913 100.2 58.4 -53.9 -43.2 -0.2 0.9 1.3 44 44 A T H 3X S+ 0 0 0 -4,-2.2 4,-1.9 -5,-0.3 -1,-0.2 0.907 98.7 56.6 -52.5 -49.4 -3.0 1.6 -1.1 45 45 A G H 3< S+ 0 0 0 -4,-0.9 -1,-0.3 -3,-0.3 -2,-0.2 0.823 110.8 45.7 -55.0 -32.8 -5.4 2.7 1.6 46 46 A M H X< S+ 0 0 12 -4,-1.2 63,-0.8 -3,-0.8 3,-0.7 0.955 110.7 48.2 -76.5 -54.3 -2.9 5.3 2.7 47 47 A L H >< S+ 0 0 6 -4,-2.4 3,-1.3 1,-0.3 2,-0.5 0.761 87.8 92.4 -57.8 -23.6 -2.0 6.8 -0.7 48 48 A L T 3< + 0 0 31 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.1 0.299 52.1 102.8 -57.4 16.4 -5.8 6.9 -1.2 49 49 A E T < S+ 0 0 121 -3,-0.7 -1,-0.3 -2,-0.5 2,-0.2 0.597 75.5 65.0 -74.7 -11.0 -5.6 10.5 0.1 50 50 A I S < S- 0 0 58 -3,-1.3 2,-0.2 1,-0.1 56,-0.0 -0.563 98.4 -81.7-107.6 174.0 -5.9 11.7 -3.5 51 51 A D >> - 0 0 127 -2,-0.2 3,-2.3 1,-0.1 4,-1.4 -0.481 37.7-116.7 -74.4 143.1 -8.6 11.5 -6.2 52 52 A N H 3> S+ 0 0 32 1,-0.3 4,-1.0 2,-0.2 -1,-0.1 0.764 117.1 61.8 -48.0 -26.4 -8.9 8.3 -8.3 53 53 A S H 3> S+ 0 0 78 2,-0.2 4,-1.2 1,-0.2 -1,-0.3 0.773 99.6 51.2 -73.9 -28.6 -7.9 10.6 -11.2 54 54 A E H <> S+ 0 0 68 -3,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.904 106.2 53.0 -75.6 -42.9 -4.5 11.5 -9.7 55 55 A L H X S+ 0 0 0 -4,-1.4 4,-2.1 1,-0.2 -1,-0.2 0.811 105.7 56.4 -63.0 -28.9 -3.4 7.9 -9.1 56 56 A L H X S+ 0 0 45 -4,-1.0 4,-1.1 -5,-0.3 -1,-0.2 0.919 105.3 51.1 -67.8 -43.0 -4.3 7.1 -12.7 57 57 A H H < S+ 0 0 133 -4,-1.2 3,-0.4 1,-0.2 4,-0.2 0.909 111.8 46.2 -60.2 -45.3 -1.9 9.8 -13.9 58 58 A M H >< S+ 0 0 1 -4,-2.0 3,-1.8 1,-0.2 7,-0.6 0.897 105.7 59.4 -65.8 -41.0 1.0 8.5 -11.8 59 59 A L H 3< S+ 0 0 61 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.784 110.7 43.0 -59.9 -25.4 0.3 4.9 -12.9 60 60 A E T 3< S+ 0 0 138 -4,-1.1 -1,-0.3 -3,-0.4 -2,-0.2 0.401 118.0 50.6 -99.1 0.9 0.9 6.1 -16.5 61 61 A S X> - 0 0 36 -3,-1.8 4,-2.7 -4,-0.2 3,-0.5 -0.873 63.8-158.8-143.4 106.8 4.0 8.2 -15.4 62 62 A P H 3> S+ 0 0 67 0, 0.0 4,-2.8 0, 0.0 5,-0.5 0.815 91.8 67.4 -50.8 -34.0 6.8 6.8 -13.3 63 63 A E H 3> S+ 0 0 144 1,-0.2 4,-1.0 2,-0.2 -5,-0.1 0.952 115.2 23.5 -52.6 -58.2 7.7 10.4 -12.3 64 64 A S H <> S+ 0 0 40 -3,-0.5 4,-1.8 -7,-0.2 5,-0.3 0.759 119.3 67.0 -79.5 -27.5 4.5 11.0 -10.3 65 65 A L H >X S+ 0 0 30 -4,-2.7 4,-2.2 -7,-0.6 3,-0.5 0.982 107.9 33.6 -56.6 -64.9 4.2 7.2 -9.8 66 66 A R H 3X S+ 0 0 143 -4,-2.8 4,-3.0 1,-0.2 5,-0.5 0.831 110.3 69.7 -63.0 -31.0 7.2 6.8 -7.6 67 67 A S H 3X S+ 0 0 51 -4,-1.0 4,-1.1 -5,-0.5 38,-0.3 0.905 111.5 28.5 -52.0 -48.6 6.7 10.2 -6.2 68 68 A K H X S+ 0 0 94 -4,-3.0 4,-1.3 -5,-0.3 3,-0.7 0.952 108.5 49.9 -48.7 -56.6 7.9 6.2 -2.6 71 71 A E H >X S+ 0 0 51 -4,-1.1 4,-3.0 -5,-0.5 3,-0.8 0.908 103.5 61.9 -48.3 -47.2 6.5 8.6 -0.0 72 72 A A H 3X>S+ 0 0 0 -4,-2.3 4,-2.0 1,-0.3 5,-0.7 0.897 99.4 54.2 -45.1 -51.0 4.2 5.9 1.1 73 73 A V H X5S+ 0 0 6 -4,-3.0 4,-3.5 2,-0.2 3,-1.0 0.979 120.3 43.8 -56.5 -65.5 5.2 7.7 5.7 76 76 A L H 3<5S+ 0 0 1 -4,-2.0 -1,-0.2 30,-0.3 -3,-0.2 0.888 109.4 57.1 -50.5 -45.5 3.4 4.4 6.2 77 77 A Q H 3< - 0 0 17 0, 0.0 3,-0.9 0, 0.0 -92,-0.3 -0.435 48.9-174.3 -64.9 94.4 -13.3 1.2 -4.5 115 16 B S T 3 S+ 0 0 35 -2,-1.2 2,-1.7 -94,-0.8 -63,-0.2 0.964 82.4 45.4 -53.0 -60.4 -12.0 4.5 -5.9 116 17 B G T 3 S+ 0 0 13 -91,-0.2 2,-3.1 1,-0.1 -95,-0.3 -0.328 72.9 164.4 -83.9 56.2 -14.0 4.2 -9.1 117 18 B Y < + 0 0 106 -2,-1.7 2,-1.9 -3,-0.9 -1,-0.1 -0.327 6.1 165.3 -72.1 62.7 -17.2 3.2 -7.4 118 19 B S + 0 0 87 -2,-3.1 -1,-0.1 1,-0.2 -2,-0.1 -0.524 16.7 139.4 -83.1 74.4 -19.2 3.9 -10.5 119 20 B S + 0 0 35 -2,-1.9 2,-0.7 -101,-0.1 -1,-0.2 -0.038 25.2 130.7-106.0 29.2 -22.4 2.1 -9.4 120 21 B S 0 0 121 -102,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.760 360.0 360.0 -89.0 114.7 -24.7 4.7 -10.8 121 22 B Y 0 0 252 -2,-0.7 -2,-0.1 0, 0.0 0, 0.0 -0.674 360.0 360.0-100.5 360.0 -27.5 3.2 -12.9