==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 03-JUL-01 1JJ6 . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*(5IT) . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 47 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3437.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 59.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 44.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 C G 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 178.9 7.6 15.6 12.3 2 140 C R - 0 0 240 1,-0.1 2,-0.0 0, 0.0 0, 0.0 -0.504 360.0-112.7 -73.8 140.5 10.2 14.6 9.7 3 141 C P - 0 0 112 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.331 36.2 -97.6 -71.6 158.0 10.5 10.9 9.1 4 142 C R - 0 0 186 1,-0.1 3,-0.1 -2,-0.0 0, 0.0 -0.360 22.1-129.3 -74.5 157.7 13.7 9.1 10.0 5 143 C A S S+ 0 0 50 1,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.841 93.2 30.5 -75.9 -32.4 16.4 8.4 7.4 6 144 C I S S- 0 0 0 3,-0.0 -1,-0.2 4,-0.0 -2,-0.0 -0.991 76.3-140.2-132.3 124.3 16.7 4.7 8.2 7 145 C N > - 0 0 89 -2,-0.4 4,-1.9 -3,-0.1 5,-0.1 -0.190 40.5 -93.5 -72.3 176.1 14.0 2.4 9.5 8 146 C K H > S+ 0 0 95 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.869 125.2 54.6 -61.1 -39.0 14.8 -0.3 12.1 9 147 C H H > S+ 0 0 71 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.952 111.9 43.9 -59.7 -48.9 15.5 -3.0 9.6 10 148 C E H > S+ 0 0 53 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.798 112.5 55.1 -64.6 -32.1 18.1 -0.8 7.8 11 149 C Q H X S+ 0 0 49 -4,-1.9 4,-2.7 2,-0.2 -2,-0.2 0.983 107.7 46.4 -63.8 -57.9 19.5 0.2 11.1 12 150 C E H X S+ 0 0 105 -4,-3.0 4,-1.5 2,-0.2 -2,-0.2 0.870 116.9 46.7 -52.8 -40.4 20.1 -3.4 12.2 13 151 C Q H >X S+ 0 0 84 -4,-2.2 4,-2.3 -5,-0.2 3,-0.6 0.999 111.1 48.5 -66.3 -63.7 21.6 -4.0 8.8 14 152 C I H 3X S+ 0 0 0 -4,-2.8 4,-2.2 1,-0.3 5,-0.2 0.812 105.9 61.8 -46.1 -34.0 23.8 -0.9 8.7 15 153 C S H 3X S+ 0 0 55 -4,-2.7 4,-1.8 -5,-0.2 3,-0.3 0.984 107.4 41.3 -57.6 -57.2 25.0 -1.8 12.2 16 154 C R H S+ 0 0 43 -4,-2.3 5,-1.7 1,-0.2 3,-0.4 0.898 109.0 44.6 -50.2 -45.6 27.9 -3.6 7.9 18 156 C L H ><5S+ 0 0 15 -4,-2.2 3,-1.4 -3,-0.3 -1,-0.2 0.808 108.2 56.2 -70.5 -31.0 29.9 -1.1 10.0 19 157 C E H 3<5S+ 0 0 73 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.723 104.7 55.2 -73.1 -17.4 31.0 -3.8 12.4 20 158 C K T 3<5S- 0 0 75 -4,-1.5 -1,-0.3 -3,-0.4 -2,-0.2 0.290 129.6-100.7 -93.5 6.5 32.4 -5.5 9.3 21 159 C G T < 5 + 0 0 62 -3,-1.4 -3,-0.2 1,-0.2 -2,-0.1 0.752 63.0 160.1 84.4 26.4 34.3 -2.4 8.6 22 160 C H < - 0 0 86 -5,-1.7 -1,-0.2 -8,-0.1 2,-0.1 -0.702 45.3-114.3 -82.5 127.4 32.3 -0.6 5.9 23 161 C P >> - 0 0 78 0, 0.0 4,-2.3 0, 0.0 3,-0.6 -0.357 11.9-135.8 -62.4 130.3 33.2 3.2 5.8 24 162 C R H 3> S+ 0 0 32 1,-0.3 4,-3.0 2,-0.2 5,-0.3 0.846 104.4 66.3 -54.7 -32.8 30.4 5.4 6.8 25 163 C Q H 3> S+ 0 0 114 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.954 107.4 37.6 -52.5 -53.8 31.3 7.5 3.8 26 164 C Q H <> S+ 0 0 36 -3,-0.6 4,-2.6 2,-0.2 5,-0.2 0.923 114.6 53.7 -65.5 -47.3 30.3 4.7 1.4 27 165 C L H X S+ 0 0 4 -4,-2.3 4,-2.8 1,-0.2 -1,-0.2 0.901 109.2 50.5 -54.7 -41.9 27.3 3.6 3.4 28 166 C A H X>S+ 0 0 3 -4,-3.0 5,-2.1 -5,-0.2 4,-0.9 0.936 109.6 49.6 -62.2 -48.7 26.0 7.2 3.4 29 167 C I H <5S+ 0 0 122 -4,-2.0 3,-0.3 -5,-0.3 -1,-0.2 0.905 115.5 44.3 -57.5 -42.8 26.4 7.5 -0.4 30 168 C I H <5S+ 0 0 128 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.911 116.1 42.9 -71.1 -44.4 24.6 4.2 -0.9 31 169 C F H <5S- 0 0 55 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.462 109.8-120.4 -81.9 -0.7 21.7 4.7 1.5 32 170 C G T <5 + 0 0 65 -4,-0.9 2,-0.3 -3,-0.3 -3,-0.2 0.920 69.8 121.6 64.2 45.1 21.3 8.3 0.4 33 171 C I < - 0 0 26 -5,-2.1 -1,-0.2 -6,-0.1 -2,-0.1 -0.929 67.0 -86.7-137.8 163.9 21.9 9.9 3.8 34 172 C G > - 0 0 37 -2,-0.3 4,-1.2 1,-0.1 -3,-0.0 -0.318 27.9-132.4 -67.2 150.6 24.2 12.3 5.5 35 173 C V H > S+ 0 0 50 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.874 108.6 54.5 -67.9 -39.9 27.5 11.1 6.9 36 174 C S H > S+ 0 0 88 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.786 100.4 60.4 -67.6 -24.6 26.8 12.9 10.2 37 175 C T H > S+ 0 0 23 2,-0.2 4,-2.5 1,-0.2 3,-0.3 0.949 103.8 51.2 -64.3 -46.0 23.4 11.1 10.5 38 176 C L H X S+ 0 0 0 -4,-1.2 4,-3.1 1,-0.2 -2,-0.2 0.902 106.3 52.7 -59.2 -43.8 25.4 7.8 10.5 39 177 C Y H < S+ 0 0 121 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.860 110.1 50.5 -60.3 -33.6 27.7 9.0 13.3 40 178 C R H < S+ 0 0 162 -4,-1.5 -2,-0.2 -3,-0.3 -1,-0.2 0.921 114.0 41.8 -70.0 -49.2 24.6 9.9 15.4 41 179 C Y H < S+ 0 0 43 -4,-2.5 -2,-0.2 1,-0.3 -3,-0.2 0.945 133.5 21.8 -64.2 -43.8 22.9 6.6 14.9 42 180 C F S < S- 0 0 21 -4,-3.1 -1,-0.3 -5,-0.2 -2,-0.1 -0.783 80.2-155.2-130.6 92.8 26.1 4.7 15.5 43 181 C P > - 0 0 48 0, 0.0 3,-2.5 0, 0.0 -3,-0.1 -0.279 26.2-121.2 -62.9 148.9 28.9 6.6 17.3 44 182 C A G > S+ 0 0 73 1,-0.3 3,-1.0 2,-0.2 -5,-0.0 0.856 117.0 60.8 -57.5 -35.8 32.5 5.5 16.7 45 183 C S G 3 S+ 0 0 120 1,-0.3 -1,-0.3 2,-0.1 -3,-0.0 0.508 97.5 63.4 -69.8 -3.4 32.6 4.8 20.4 46 184 C S G < 0 0 65 -3,-2.5 -1,-0.3 1,-0.1 -2,-0.2 0.018 360.0 360.0-113.1 30.2 29.8 2.3 19.8 47 185 C I < 0 0 109 -3,-1.0 -2,-0.1 -5,-0.1 -3,-0.1 0.628 360.0 360.0-140.1 360.0 31.4 -0.4 17.6