==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 03-JUL-01 1JJ8 . COMPND 2 MOLECULE: 5'-D(*TP*GP*(5IT) . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 49 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3471.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 59.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 42.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 C G 0 0 133 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.7 -0.6 16.2 24.7 2 140 C R - 0 0 236 1,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.157 360.0-100.6 -62.4 156.9 2.6 16.8 26.7 3 141 C P - 0 0 109 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.644 33.3-105.3 -89.6 142.9 3.9 20.4 27.0 4 142 C R - 0 0 185 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.253 23.8-135.2 -55.6 144.9 6.7 21.9 24.9 5 143 C A S S+ 0 0 57 1,-0.2 2,-0.3 32,-0.1 -1,-0.1 0.490 84.9 41.0 -83.8 -4.6 9.9 22.2 27.0 6 144 C I - 0 0 4 4,-0.0 -1,-0.2 27,-0.0 -2,-0.0 -0.924 68.3-145.9-153.6 126.3 10.7 25.7 25.7 7 145 C N > - 0 0 93 -2,-0.3 4,-1.8 -3,-0.1 -2,-0.0 -0.070 43.3 -91.1 -72.9 179.0 8.7 28.8 24.9 8 146 C K H > S+ 0 0 53 1,-0.2 4,-1.6 2,-0.2 5,-0.4 0.919 122.4 55.6 -59.8 -50.6 9.4 31.3 22.1 9 147 C H H > S+ 0 0 145 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.884 109.1 47.6 -51.5 -45.9 11.7 33.5 24.1 10 148 C E H > S+ 0 0 38 2,-0.2 4,-3.5 3,-0.2 5,-0.3 0.897 107.9 57.7 -64.4 -42.6 13.9 30.6 25.1 11 149 C Q H X S+ 0 0 62 -4,-1.8 4,-3.8 2,-0.2 -2,-0.2 0.965 110.0 37.5 -54.6 -65.8 14.2 29.4 21.5 12 150 C E H X S+ 0 0 63 -4,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.811 118.7 54.7 -58.5 -27.7 15.6 32.4 19.7 13 151 C Q H X S+ 0 0 74 -4,-1.2 4,-1.8 -5,-0.4 -1,-0.2 0.957 113.4 38.3 -68.8 -51.6 17.7 33.0 22.8 14 152 C I H X S+ 0 0 0 -4,-3.5 4,-2.9 1,-0.2 -2,-0.2 0.870 113.1 60.6 -64.8 -37.9 19.1 29.4 22.7 15 153 C S H X S+ 0 0 34 -4,-3.8 4,-0.7 -5,-0.3 -1,-0.2 0.901 106.5 44.3 -54.7 -46.7 19.2 29.9 19.0 16 154 C R H < S+ 0 0 74 -4,-2.0 3,-0.4 2,-0.2 -1,-0.2 0.847 111.2 54.1 -69.4 -36.3 21.6 32.8 19.3 17 155 C L H <>S+ 0 0 47 -4,-1.8 5,-1.6 1,-0.2 3,-0.3 0.944 103.2 55.8 -64.4 -45.2 23.7 31.1 21.9 18 156 C L H ><5S+ 0 0 12 -4,-2.9 2,-0.8 1,-0.3 3,-0.8 0.754 101.0 61.7 -59.5 -21.6 24.2 28.1 19.5 19 157 C E T 3<5S+ 0 0 99 -4,-0.7 -1,-0.3 -3,-0.4 -4,-0.0 -0.540 98.2 54.3-103.5 63.6 25.5 30.6 17.0 20 158 C K T 3 5S- 0 0 80 -2,-0.8 -1,-0.2 -3,-0.3 -2,-0.2 0.041 126.7 -94.4-169.1 -1.9 28.4 31.7 19.2 21 159 C G T < 5 + 0 0 64 -3,-0.8 -3,-0.2 1,-0.3 -2,-0.1 0.632 65.2 164.6 88.2 14.9 29.7 28.1 19.6 22 160 C H < - 0 0 65 -5,-1.6 -1,-0.3 -8,-0.1 -2,-0.1 -0.533 42.8-116.8 -68.7 121.1 27.9 27.4 22.9 23 161 C P >> - 0 0 72 0, 0.0 4,-1.7 0, 0.0 3,-0.9 -0.309 10.9-133.0 -58.1 135.2 27.9 23.7 23.4 24 162 C R H 3> S+ 0 0 30 1,-0.3 4,-1.3 2,-0.2 5,-0.2 0.848 107.4 63.7 -60.1 -30.6 24.5 22.1 23.4 25 163 C Q H 3> S+ 0 0 123 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.870 104.7 46.9 -60.3 -35.2 25.6 20.2 26.6 26 164 C Q H <> S+ 0 0 72 -3,-0.9 4,-2.3 1,-0.2 -2,-0.2 0.918 110.5 49.0 -71.6 -48.5 25.9 23.6 28.3 27 165 C L H X S+ 0 0 1 -4,-1.7 4,-1.4 1,-0.2 -1,-0.2 0.620 104.0 60.8 -69.2 -15.5 22.6 25.1 27.2 28 166 C A H X>S+ 0 0 9 -4,-1.3 5,-2.0 -5,-0.2 4,-1.5 0.920 109.9 42.6 -75.0 -43.3 20.7 21.9 28.3 29 167 C I H <5S+ 0 0 116 -4,-1.1 -2,-0.2 3,-0.2 3,-0.2 0.951 114.5 48.7 -65.9 -53.9 21.8 22.4 31.8 30 168 C I H <5S+ 0 0 109 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.887 124.6 30.6 -55.3 -42.7 21.3 26.2 31.9 31 169 C F H <5S- 0 0 40 -4,-1.4 -1,-0.2 -5,-0.2 -2,-0.2 0.557 107.5-120.7 -97.2 -6.3 17.8 25.9 30.5 32 170 C G T <5 + 0 0 62 -4,-1.5 2,-0.3 1,-0.2 -3,-0.2 0.973 66.6 122.3 68.7 54.2 16.9 22.5 31.9 33 171 C I < - 0 0 16 -5,-2.0 -1,-0.2 -6,-0.1 -2,-0.1 -0.996 66.0 -91.3-146.3 148.9 16.2 20.5 28.7 34 172 C G > - 0 0 39 -2,-0.3 4,-0.8 1,-0.1 3,-0.2 -0.228 27.2-130.3 -60.4 143.9 17.6 17.4 27.2 35 173 C V H >> S+ 0 0 43 1,-0.2 3,-2.1 2,-0.2 4,-1.4 0.950 109.9 55.6 -58.3 -47.7 20.5 17.7 24.7 36 174 C S H 3> S+ 0 0 89 1,-0.3 4,-1.5 2,-0.2 3,-0.3 0.856 102.9 57.6 -54.5 -34.6 18.7 15.5 22.2 37 175 C T H 3> S+ 0 0 25 1,-0.2 4,-1.9 -3,-0.2 -1,-0.3 0.725 102.0 55.8 -64.1 -26.9 15.8 18.0 22.4 38 176 C L H - 0 0 48 0, 0.0 3,-1.2 0, 0.0 -3,-0.1 -0.049 28.2-121.6 -48.3 149.4 19.5 20.8 14.1 44 182 C A G >> S+ 0 0 38 1,-0.3 4,-1.5 2,-0.2 3,-1.0 0.765 113.5 63.0 -66.2 -24.3 23.3 21.3 13.5 45 183 C S G 34 S+ 0 0 101 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.675 101.4 49.6 -72.0 -23.1 22.4 21.6 9.8 46 184 C S G <4 S+ 0 0 72 -3,-1.2 -1,-0.2 1,-0.1 -2,-0.2 0.204 110.6 50.2-102.4 14.5 20.3 24.7 10.5 47 185 C I T <4 S+ 0 0 30 -3,-1.0 -2,-0.2 -5,-0.1 -3,-0.1 0.667 83.8 78.2-118.0 -34.3 23.0 26.4 12.6 48 186 C K < 0 0 185 -4,-1.5 -3,-0.1 -29,-0.0 -2,-0.1 0.586 360.0 360.0 -53.3 -5.2 26.1 26.2 10.4 49 187 C K 0 0 86 0, 0.0 -3,-0.1 0, 0.0 -2,-0.0 0.001 360.0 360.0-121.9 360.0 24.2 29.1 8.7