==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 11-JUL-01 1JK1 . COMPND 2 MOLECULE: 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*G)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.C.MILLER,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6963.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 29.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 181 0, 0.0 14,-0.2 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 55.9 -13.9 8.0 60.9 2 104 A P + 0 0 89 0, 0.0 2,-0.4 0, 0.0 13,-0.1 0.317 360.0 72.8 -87.0 8.3 -14.7 4.4 62.3 3 105 A Y E -A 14 0A 96 11,-1.5 11,-2.4 13,-0.1 2,-0.2 -0.769 65.9-176.9-128.0 87.7 -11.0 3.5 62.4 4 106 A A E -A 13 0A 40 -2,-0.4 9,-0.2 9,-0.2 7,-0.1 -0.505 32.8-106.0 -84.5 152.2 -9.1 5.2 65.2 5 107 A C - 0 0 12 7,-2.7 5,-0.2 -2,-0.2 7,-0.1 -0.680 23.0-155.7 -82.7 115.1 -5.3 4.9 65.9 6 108 A P + 0 0 103 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.768 61.8 106.9 -58.2 -37.0 -4.7 2.7 69.1 7 109 A V S > S- 0 0 37 1,-0.1 3,-1.5 2,-0.1 -2,-0.1 -0.300 71.3-137.9 -52.7 121.3 -1.3 4.2 69.9 8 110 A E T 3 S+ 0 0 170 1,-0.3 -1,-0.1 3,-0.1 -3,-0.0 0.824 97.0 54.9 -51.6 -42.7 -2.0 6.3 73.0 9 111 A S T 3 S+ 0 0 106 2,-0.0 2,-0.4 0, 0.0 -1,-0.3 0.242 98.9 79.1 -82.1 15.4 0.1 9.4 72.0 10 112 A C < - 0 0 26 -3,-1.5 -5,-0.0 -5,-0.2 0, 0.0 -0.982 54.9-166.6-129.4 138.1 -1.7 9.7 68.7 11 113 A D + 0 0 160 -2,-0.4 2,-0.3 -7,-0.1 -3,-0.1 -0.256 41.5 134.3-114.2 44.4 -5.1 11.3 67.9 12 114 A R - 0 0 141 -7,-0.1 -7,-2.7 8,-0.0 2,-0.3 -0.689 29.1-174.5-100.4 148.8 -5.7 10.1 64.3 13 115 A R E -A 4 0A 126 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.998 7.9-157.8-139.9 136.4 -8.9 8.6 62.8 14 116 A F E -A 3 0A 30 -11,-2.4 -11,-1.5 -2,-0.3 3,-0.0 -0.840 22.6-141.9-120.2 152.5 -9.5 7.1 59.3 15 117 A S S S+ 0 0 89 -2,-0.3 2,-0.3 -14,-0.2 -1,-0.1 0.717 92.0 35.7 -79.6 -22.1 -12.5 6.5 57.0 16 118 A R S >> S- 0 0 151 -13,-0.1 4,-0.8 1,-0.1 3,-0.5 -0.962 74.1-131.4-135.6 148.6 -11.1 3.2 55.8 17 119 A S H >> S+ 0 0 49 -2,-0.3 4,-2.4 1,-0.2 3,-0.6 0.847 104.0 67.1 -64.1 -38.8 -9.1 0.4 57.4 18 120 A A H 3> S+ 0 0 51 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.850 102.5 50.0 -51.8 -34.1 -6.5 0.3 54.6 19 121 A E H <> S+ 0 0 43 -3,-0.5 4,-2.5 2,-0.2 -1,-0.3 0.808 106.4 51.8 -77.8 -30.8 -5.5 3.8 55.8 20 122 A L H < S+ 0 0 98 -4,-1.6 3,-0.6 -5,-0.2 4,-0.2 0.898 114.8 49.6 -68.7 -44.7 -0.7 2.2 56.3 23 125 A H H >< S+ 0 0 19 -4,-2.5 3,-1.8 1,-0.2 4,-0.5 0.829 100.1 65.0 -63.7 -36.1 -0.7 5.0 59.0 24 126 A I H >X S+ 0 0 44 -4,-2.4 4,-1.7 1,-0.3 3,-1.3 0.827 86.5 72.2 -58.1 -31.0 0.3 2.5 61.7 25 127 A R H S+ 0 0 74 -4,-0.7 4,-1.8 -3,-0.6 5,-0.7 0.706 85.3 67.4 -58.4 -20.4 3.6 2.0 59.8 26 128 A I H <45S+ 0 0 120 -3,-1.8 -1,-0.3 -4,-0.2 -2,-0.2 0.910 107.4 38.1 -65.4 -41.4 4.6 5.5 61.0 27 129 A H H <45S+ 0 0 75 -3,-1.3 -2,-0.2 -4,-0.5 -1,-0.2 0.821 118.3 48.0 -79.6 -35.1 4.7 4.2 64.6 28 130 A T H <5S- 0 0 94 -4,-1.7 -2,-0.2 2,-0.1 -1,-0.2 0.716 100.1-131.1 -79.3 -22.7 6.2 0.8 63.8 29 131 A G T <5 + 0 0 57 -4,-1.8 2,-0.5 1,-0.2 -3,-0.2 0.628 44.8 169.0 78.5 15.3 9.0 2.3 61.6 30 132 A Q < + 0 0 101 -5,-0.7 -1,-0.2 -6,-0.1 -2,-0.1 -0.498 14.6 176.7 -67.3 111.3 8.1 -0.3 58.9 31 133 A K + 0 0 113 -2,-0.5 11,-0.2 -3,-0.1 12,-0.2 -0.717 4.6 169.9-121.9 81.1 9.8 0.6 55.6 32 134 A P + 0 0 58 0, 0.0 2,-0.6 0, 0.0 11,-0.2 0.493 54.3 73.6 -64.5 -18.1 8.8 -2.3 53.1 33 135 A F E -B 42 0B 61 9,-2.4 9,-1.7 2,-0.0 2,-0.3 -0.889 60.8-171.6-116.7 110.8 10.1 -0.8 49.8 34 136 A Q E -B 41 0B 87 -2,-0.6 2,-0.5 7,-0.2 7,-0.2 -0.732 23.1-123.9-101.5 145.9 13.8 -0.7 49.1 35 137 A C > - 0 0 0 5,-1.9 4,-2.2 -2,-0.3 5,-0.1 -0.752 11.7-150.3 -88.1 123.1 15.7 1.1 46.2 36 138 A R T 4 S+ 0 0 220 -2,-0.5 -1,-0.1 1,-0.2 -2,-0.0 0.825 93.0 49.7 -59.3 -36.2 17.9 -1.3 44.2 37 139 A I T 4 S+ 0 0 104 1,-0.1 -1,-0.2 3,-0.1 15,-0.0 0.951 129.3 11.7 -73.6 -52.2 20.3 1.4 43.4 38 140 A C T 4 S- 0 0 59 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.453 91.8-128.0-108.9 -1.0 21.1 3.2 46.7 39 141 A M < + 0 0 106 -4,-2.2 2,-0.3 1,-0.2 -3,-0.1 0.637 54.0 151.3 64.1 19.5 19.5 0.6 49.1 40 142 A R - 0 0 152 -5,-0.1 -5,-1.9 1,-0.0 2,-0.2 -0.638 40.0-130.6 -82.8 137.9 17.4 3.2 50.9 41 143 A N E -B 34 0B 66 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.595 21.2-166.2 -91.3 148.8 14.2 2.0 52.5 42 144 A F E -B 33 0B 26 -9,-1.7 -9,-2.4 -2,-0.2 6,-0.1 -0.965 26.7-137.9-134.7 151.0 10.8 3.7 52.1 43 145 A S S S+ 0 0 50 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.755 89.3 45.2 -75.9 -26.5 7.5 3.4 53.8 44 146 A R > - 0 0 65 -11,-0.1 4,-1.2 1,-0.1 -1,-0.1 -0.931 65.2-143.5-129.8 145.7 5.6 3.6 50.5 45 147 A S H > S+ 0 0 63 -2,-0.4 4,-2.0 2,-0.2 -1,-0.1 0.881 104.0 53.5 -67.2 -41.6 5.8 2.0 47.1 46 148 A D H > S+ 0 0 71 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.834 109.5 48.6 -65.5 -32.1 4.6 5.1 45.3 47 149 A H H > S+ 0 0 85 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.761 107.6 55.4 -78.6 -27.7 7.4 7.2 47.0 48 150 A L H X S+ 0 0 24 -4,-1.2 4,-2.2 2,-0.2 -2,-0.2 0.926 105.5 53.4 -67.4 -44.9 10.0 4.6 46.1 49 151 A T H X S+ 0 0 72 -4,-2.0 4,-1.0 1,-0.2 -2,-0.2 0.942 112.1 42.5 -53.4 -53.5 9.0 4.9 42.4 50 152 A T H >< S+ 0 0 30 -4,-1.6 3,-0.6 1,-0.2 4,-0.4 0.880 111.6 55.8 -65.8 -34.6 9.4 8.7 42.3 51 153 A H H >< S+ 0 0 31 -4,-1.9 3,-1.8 1,-0.2 4,-0.4 0.877 100.1 60.1 -63.2 -38.9 12.7 8.4 44.4 52 154 A I H >X S+ 0 0 51 -4,-2.2 3,-1.7 1,-0.3 4,-1.6 0.827 92.4 66.8 -59.5 -31.1 14.1 6.0 41.8 53 155 A R H - 0 0 4 5,-2.6 4,-1.6 -2,-0.4 14,-0.0 -0.418 18.0-141.4 -66.1 132.2 5.1 22.0 31.4 64 166 A D T 4 S+ 0 0 158 2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.791 98.9 43.7 -64.4 -30.1 2.4 22.9 28.8 65 167 A I T 4 S+ 0 0 112 3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.939 134.7 7.2 -84.7 -48.0 3.8 26.4 28.5 66 168 A C T 4 S- 0 0 72 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.477 90.2-121.2-115.5 -7.6 7.6 26.0 28.3 67 169 A G < + 0 0 40 -4,-1.6 2,-0.1 1,-0.2 -3,-0.1 0.508 52.1 159.1 80.9 0.9 8.1 22.2 28.1 68 170 A R - 0 0 155 -6,-0.2 -5,-2.6 1,-0.1 2,-0.3 -0.415 32.3-138.3 -60.8 130.5 10.2 22.0 31.2 69 171 A K E -C 62 0C 130 -7,-0.3 2,-0.3 -2,-0.1 -7,-0.3 -0.668 20.6-173.8 -97.1 152.2 10.1 18.4 32.5 70 172 A F E -C 61 0C 25 -9,-1.8 -9,-2.3 -2,-0.3 6,-0.0 -0.961 32.6-127.6-141.9 153.5 9.8 17.1 36.1 71 173 A A S S+ 0 0 16 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.870 94.8 40.2 -68.1 -37.1 10.0 13.7 37.8 72 174 A R S > S- 0 0 101 -11,-0.1 4,-1.7 1,-0.1 3,-0.4 -0.861 74.6-130.1-120.0 153.1 6.6 14.2 39.6 73 175 A S H > S+ 0 0 60 -2,-0.3 4,-2.2 1,-0.2 5,-0.1 0.796 109.4 56.9 -65.9 -31.3 3.3 15.7 38.6 74 176 A D H > S+ 0 0 78 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.824 103.6 53.1 -72.2 -29.5 3.2 17.9 41.8 75 177 A E H > S+ 0 0 54 -3,-0.4 4,-1.7 2,-0.2 -2,-0.2 0.922 110.8 47.0 -66.9 -45.5 6.6 19.5 40.8 76 178 A R H X S+ 0 0 71 -4,-1.7 4,-2.7 2,-0.2 -2,-0.2 0.916 111.2 52.0 -62.7 -41.6 5.1 20.3 37.3 77 179 A K H X S+ 0 0 125 -4,-2.2 4,-1.0 1,-0.2 -1,-0.2 0.898 109.2 48.7 -60.5 -45.8 2.0 21.7 39.0 78 180 A R H < S+ 0 0 185 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.847 115.6 47.9 -61.8 -34.0 4.0 24.0 41.3 79 181 A H H >< S+ 0 0 19 -4,-1.7 3,-2.5 1,-0.2 4,-0.2 0.916 99.6 60.0 -72.8 -52.1 6.0 25.1 38.2 80 182 A T H >< S+ 0 0 43 -4,-2.7 3,-1.9 1,-0.3 -1,-0.2 0.836 95.4 66.6 -48.8 -38.3 3.2 25.9 35.7 81 183 A K G >X S+ 0 0 125 -4,-1.0 3,-1.2 1,-0.3 4,-0.5 0.674 84.9 72.3 -58.5 -20.7 1.9 28.6 38.1 82 184 A I G <4 S+ 0 0 92 -3,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.591 81.6 71.6 -72.8 -11.0 5.0 30.6 37.6 83 185 A H G <4 S+ 0 0 72 -3,-1.9 -1,-0.2 -4,-0.2 -2,-0.1 0.391 89.9 60.3 -84.3 0.3 3.9 31.6 34.1 84 186 A L T <4 0 0 157 -3,-1.2 -1,-0.2 -4,-0.1 -2,-0.2 0.759 360.0 360.0 -88.5 -38.4 1.2 33.8 35.5 85 187 A R < 0 0 239 -4,-0.5 -3,-0.0 -3,-0.1 0, 0.0 -0.516 360.0 360.0 179.8 360.0 3.9 35.9 37.3