==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 11-JUL-01 1JK2 . COMPND 2 MOLECULE: 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*TP*G)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.C.MILLER,C.O.PABO . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6906.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 54.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 28.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A R 0 0 181 0, 0.0 14,-0.2 0, 0.0 13,-0.1 0.000 360.0 360.0 360.0 75.0 -14.2 8.2 61.1 2 104 A P + 0 0 90 0, 0.0 2,-0.4 0, 0.0 13,-0.2 0.512 360.0 52.6 -74.6 -6.6 -15.2 4.6 62.1 3 105 A Y E -A 14 0A 112 11,-1.5 11,-2.9 13,-0.1 2,-0.2 -0.995 66.9-171.9-136.5 130.6 -11.6 3.6 62.9 4 106 A A E -A 13 0A 41 -2,-0.4 9,-0.2 9,-0.2 7,-0.1 -0.621 33.2 -89.8-114.4 175.0 -9.1 5.4 65.3 5 107 A C - 0 0 15 7,-2.0 5,-0.2 -2,-0.2 7,-0.1 -0.790 24.4-157.7 -93.9 120.4 -5.4 5.1 66.2 6 108 A P + 0 0 95 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.783 65.5 99.1 -60.5 -40.8 -4.5 2.7 69.1 7 109 A V S > S- 0 0 43 1,-0.2 3,-1.2 2,-0.1 -2,-0.1 -0.405 70.3-145.7 -57.0 116.9 -1.1 4.2 70.0 8 110 A E T 3 S+ 0 0 187 1,-0.3 -1,-0.2 -2,-0.2 -3,-0.0 0.790 95.3 66.8 -57.1 -28.5 -2.0 6.4 73.0 9 111 A S T 3 S+ 0 0 102 2,-0.0 2,-0.3 1,-0.0 -1,-0.3 0.076 97.8 66.3 -83.3 26.9 0.6 8.9 71.8 10 112 A C < - 0 0 30 -3,-1.2 2,-0.2 -5,-0.2 -5,-0.1 -0.971 57.4-162.0-152.9 135.3 -1.5 9.7 68.7 11 113 A D + 0 0 150 -2,-0.3 2,-0.3 -7,-0.1 -3,-0.1 -0.390 43.8 139.0-111.5 53.6 -4.8 11.3 68.0 12 114 A R - 0 0 135 -2,-0.2 -7,-2.0 -7,-0.1 2,-0.3 -0.720 27.8-172.5-102.9 150.9 -5.6 10.1 64.4 13 115 A R E -A 4 0A 116 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.999 4.5-166.8-141.9 138.1 -8.8 8.9 62.9 14 116 A F E -A 3 0A 30 -11,-2.9 -11,-1.5 -2,-0.3 6,-0.0 -0.881 27.5-140.0-128.6 159.0 -9.6 7.3 59.4 15 117 A S S S+ 0 0 63 -2,-0.3 2,-0.2 -14,-0.2 -1,-0.1 0.820 89.0 37.5 -80.1 -35.3 -12.5 6.4 57.1 16 118 A R S > S- 0 0 136 -13,-0.1 4,-0.7 1,-0.1 -2,-0.1 -0.619 72.6-128.0-115.6 172.9 -11.1 3.1 56.0 17 119 A S H > S+ 0 0 58 -2,-0.2 4,-1.8 2,-0.2 5,-0.1 0.728 108.3 59.5 -90.8 -28.4 -9.2 0.1 57.5 18 120 A A H > S+ 0 0 67 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.782 106.2 51.6 -69.6 -26.5 -6.5 0.1 54.8 19 121 A E H > S+ 0 0 42 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.844 108.0 47.7 -78.5 -37.8 -5.8 3.7 55.9 20 122 A L H X S+ 0 0 27 -4,-0.7 4,-2.1 2,-0.2 -2,-0.2 0.867 113.2 51.1 -72.1 -31.9 -5.4 3.0 59.6 21 123 A T H < S+ 0 0 89 -4,-1.8 4,-0.5 2,-0.2 -2,-0.2 0.837 111.8 45.4 -71.2 -37.7 -3.1 0.0 58.6 22 124 A R H >< S+ 0 0 95 -4,-1.3 3,-0.9 1,-0.2 4,-0.2 0.887 113.3 51.7 -72.0 -39.4 -0.9 2.2 56.3 23 125 A H H >< S+ 0 0 19 -4,-2.1 3,-2.9 1,-0.2 4,-0.5 0.896 95.5 68.0 -63.1 -44.5 -0.8 4.9 59.0 24 126 A I T >X S+ 0 0 37 -4,-2.1 4,-2.1 1,-0.3 3,-0.9 0.751 84.5 73.5 -50.1 -26.1 0.3 2.5 61.8 25 127 A R H <> S+ 0 0 64 -3,-0.9 4,-1.9 -4,-0.5 5,-0.3 0.739 83.7 68.1 -60.8 -26.8 3.6 2.2 59.9 26 128 A I H <4 S+ 0 0 120 -3,-2.9 -1,-0.3 -4,-0.2 -2,-0.2 0.930 110.5 33.5 -57.0 -44.1 4.5 5.7 61.2 27 129 A H H <4 S+ 0 0 72 -3,-0.9 -2,-0.2 -4,-0.5 -1,-0.2 0.810 121.4 46.1 -82.5 -37.6 4.6 4.2 64.7 28 130 A T H < S- 0 0 81 -4,-2.1 -2,-0.2 2,-0.1 -3,-0.2 0.655 99.5-134.3 -80.5 -16.4 6.0 0.7 63.9 29 131 A G < + 0 0 53 -4,-1.9 -3,-0.1 -5,-0.3 -4,-0.1 0.586 40.4 169.9 74.5 10.5 8.6 2.2 61.6 30 132 A Q + 0 0 85 -5,-0.3 -1,-0.2 -6,-0.1 -2,-0.1 -0.361 15.7 176.2 -59.2 129.6 8.0 -0.4 58.8 31 133 A K + 0 0 114 -2,-0.1 12,-0.2 1,-0.1 11,-0.2 -0.716 5.6 169.9-136.2 77.4 9.7 0.5 55.5 32 134 A P + 0 0 69 0, 0.0 2,-0.6 0, 0.0 11,-0.2 0.543 53.6 77.2 -64.9 -18.3 8.8 -2.6 53.2 33 135 A F E -B 42 0B 63 9,-2.1 9,-2.7 2,-0.0 2,-0.3 -0.894 61.8-167.0-109.9 116.3 10.0 -1.2 49.9 34 136 A Q E -B 41 0B 95 -2,-0.6 2,-0.6 7,-0.2 7,-0.2 -0.743 19.2-132.7-104.3 143.4 13.7 -1.1 49.1 35 137 A C > - 0 0 0 5,-2.1 4,-2.0 -2,-0.3 5,-0.0 -0.830 11.8-155.7 -89.0 122.7 15.5 0.8 46.3 36 138 A R T 4 S+ 0 0 221 -2,-0.6 -1,-0.1 2,-0.2 -2,-0.0 0.684 89.0 56.7 -74.1 -17.9 18.0 -1.6 44.6 37 139 A I T 4 S+ 0 0 93 3,-0.1 -1,-0.2 1,-0.1 15,-0.0 0.957 129.1 7.6 -79.3 -50.5 20.1 1.3 43.4 38 140 A C T 4 S- 0 0 58 2,-0.1 -2,-0.2 0, 0.0 3,-0.1 0.477 92.0-127.1-111.0 -3.8 20.9 3.0 46.8 39 141 A M < + 0 0 99 -4,-2.0 2,-0.1 1,-0.2 -3,-0.1 0.463 56.2 148.0 72.4 4.0 19.4 0.5 49.2 40 142 A R - 0 0 151 -6,-0.1 -5,-2.1 1,-0.1 2,-0.3 -0.463 41.3-134.9 -70.8 137.5 17.3 3.1 51.0 41 143 A N E -B 34 0B 67 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.715 17.8-160.6 -96.0 150.6 14.1 1.7 52.4 42 144 A F E -B 33 0B 26 -9,-2.7 -9,-2.1 -2,-0.3 6,-0.1 -0.951 25.1-137.7-131.2 148.8 10.7 3.4 52.0 43 145 A S S S+ 0 0 47 -2,-0.3 2,-0.4 -12,-0.2 -1,-0.1 0.772 90.9 46.3 -72.8 -24.9 7.4 3.2 53.8 44 146 A R > - 0 0 68 -11,-0.1 4,-1.4 1,-0.1 -1,-0.1 -0.946 65.0-145.4-130.6 141.5 5.5 3.4 50.5 45 147 A S H > S+ 0 0 64 -2,-0.4 4,-2.2 1,-0.2 -1,-0.1 0.876 104.0 52.9 -64.1 -41.0 5.7 1.8 47.1 46 148 A D H > S+ 0 0 72 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.856 110.2 47.9 -64.4 -35.9 4.5 4.9 45.3 47 149 A H H > S+ 0 0 89 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.774 109.0 55.0 -75.5 -27.6 7.2 7.0 47.0 48 150 A L H X S+ 0 0 23 -4,-1.4 4,-2.2 2,-0.2 -2,-0.2 0.934 105.5 53.0 -68.6 -44.1 9.8 4.4 46.1 49 151 A T H X S+ 0 0 71 -4,-2.2 4,-0.8 1,-0.2 -2,-0.2 0.931 113.0 41.6 -55.9 -51.2 8.8 4.7 42.4 50 152 A T H >< S+ 0 0 31 -4,-1.7 3,-0.7 1,-0.2 4,-0.4 0.880 111.3 57.1 -67.5 -36.3 9.3 8.5 42.3 51 153 A H H >< S+ 0 0 32 -4,-1.9 3,-1.9 1,-0.2 4,-0.4 0.880 99.7 59.2 -59.7 -40.4 12.5 8.2 44.4 52 154 A I H >X S+ 0 0 52 -4,-2.2 4,-1.9 1,-0.3 3,-1.6 0.816 92.3 68.1 -60.3 -28.3 14.0 5.9 41.8 53 155 A R H - 0 0 4 5,-2.4 4,-1.6 -2,-0.4 -1,-0.1 -0.412 18.4-140.1 -64.4 132.6 5.1 21.7 31.4 64 166 A D T 4 S+ 0 0 158 1,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.798 99.3 43.4 -63.2 -29.0 2.3 22.6 28.9 65 167 A I T 4 S+ 0 0 115 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.904 134.2 7.4 -88.1 -43.9 3.8 26.2 28.5 66 168 A C T 4 S- 0 0 71 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.510 88.9-123.5-118.1 -7.9 7.6 25.7 28.3 67 169 A G < + 0 0 38 -4,-1.6 -3,-0.1 1,-0.2 2,-0.1 0.464 51.7 157.6 79.8 -0.8 8.0 21.9 28.1 68 170 A R - 0 0 156 -6,-0.2 -5,-2.4 1,-0.1 -1,-0.2 -0.387 35.9-131.9 -59.5 132.3 10.3 21.7 31.1 69 171 A K E -C 62 0C 131 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.607 22.6-170.9 -95.4 149.3 10.2 18.2 32.5 70 172 A F E -C 61 0C 26 -9,-1.7 -9,-2.1 -2,-0.2 6,-0.1 -0.980 30.0-132.1-137.9 148.9 9.7 16.9 36.1 71 173 A A S S+ 0 0 17 -2,-0.3 2,-0.3 -12,-0.2 -1,-0.1 0.843 94.2 37.7 -64.9 -36.2 9.9 13.5 37.9 72 174 A R S > S- 0 0 100 -11,-0.1 4,-1.6 1,-0.1 3,-0.4 -0.882 75.9-128.2-122.5 153.1 6.6 14.0 39.6 73 175 A S H > S+ 0 0 62 -2,-0.3 4,-2.3 1,-0.2 5,-0.1 0.853 110.4 54.4 -64.1 -37.5 3.2 15.5 38.6 74 176 A D H > S+ 0 0 75 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.771 103.6 55.9 -69.9 -26.9 3.1 17.8 41.7 75 177 A E H > S+ 0 0 53 -3,-0.4 4,-1.9 2,-0.2 -1,-0.2 0.931 110.4 45.2 -68.6 -43.8 6.5 19.2 40.8 76 178 A R H X S+ 0 0 73 -4,-1.6 4,-2.9 1,-0.2 -2,-0.2 0.911 111.1 53.8 -63.8 -39.9 5.1 20.2 37.4 77 179 A K H X S+ 0 0 136 -4,-2.3 4,-1.0 1,-0.2 -1,-0.2 0.897 108.9 48.1 -61.7 -42.5 2.0 21.6 39.1 78 180 A R H < S+ 0 0 185 -4,-2.1 4,-0.3 1,-0.2 -1,-0.2 0.889 115.8 46.5 -64.7 -38.3 4.1 23.8 41.3 79 181 A H H >< S+ 0 0 19 -4,-1.9 3,-2.0 1,-0.2 4,-0.3 0.886 99.6 63.4 -71.2 -45.8 6.1 25.0 38.3 80 182 A T H >< S+ 0 0 48 -4,-2.9 3,-1.9 1,-0.3 -1,-0.2 0.841 93.1 66.3 -51.6 -36.4 3.3 25.7 35.8 81 183 A K G >X S+ 0 0 117 -4,-1.0 3,-1.9 1,-0.3 4,-1.0 0.758 84.1 73.1 -58.2 -26.8 2.0 28.5 38.1 82 184 A I G <4 S+ 0 0 92 -3,-2.0 -1,-0.3 -4,-0.3 -2,-0.2 0.652 82.4 71.1 -67.1 -10.0 5.2 30.5 37.6 83 185 A H G <4 S+ 0 0 73 -3,-1.9 -1,-0.3 -4,-0.3 -2,-0.2 0.450 95.2 52.5 -83.7 -2.0 4.0 31.3 34.0 84 186 A L T <4 0 0 161 -3,-1.9 -2,-0.2 -4,-0.1 -1,-0.2 0.839 360.0 360.0 -89.9 -52.4 1.3 33.6 35.5 85 187 A R < 0 0 236 -4,-1.0 -3,-0.1 0, 0.0 -4,-0.0 -0.135 360.0 360.0-164.7 360.0 3.9 35.5 37.6