==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 12-JUL-01 1JKO . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*GP*TP*AP*AP*GP*A)- . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3278.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 17.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 41.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 C G 0 0 132 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -90.8 7.1 15.3 11.9 2 140 C R - 0 0 237 1,-0.1 2,-0.0 0, 0.0 0, 0.0 -0.684 360.0-119.9 -84.6 129.8 10.0 14.5 9.5 3 141 C P - 0 0 105 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.386 32.9-109.3 -65.7 146.1 10.1 10.9 8.5 4 142 C R - 0 0 184 1,-0.1 3,-0.1 2,-0.0 0, 0.0 -0.073 12.6-135.1 -65.9 175.5 13.4 9.2 9.5 5 143 C A S S+ 0 0 64 1,-0.3 2,-0.4 32,-0.0 -1,-0.1 0.625 90.9 38.9-107.1 -22.0 15.9 8.2 6.8 6 144 C I S S- 0 0 8 4,-0.0 -1,-0.3 3,-0.0 2,-0.0 -0.933 74.7-150.1-136.5 113.2 16.6 4.8 8.2 7 145 C N >> - 0 0 114 -2,-0.4 4,-2.3 -3,-0.1 3,-1.4 -0.282 40.7 -91.4 -75.4 162.7 14.0 2.5 9.8 8 146 C K T 34 S+ 0 0 100 1,-0.3 4,-0.2 2,-0.2 -1,-0.1 0.669 124.2 64.1 -47.5 -20.6 14.6 -0.1 12.5 9 147 C H T >> S+ 0 0 51 2,-0.2 4,-2.3 1,-0.2 3,-0.8 0.934 108.6 36.6 -70.6 -47.7 15.3 -2.7 9.8 10 148 C E H <>>S+ 0 0 9 -3,-1.4 4,-3.2 2,-0.3 5,-1.0 0.857 103.0 72.0 -71.4 -38.1 18.3 -0.9 8.5 11 149 C Q H 3<5S+ 0 0 26 -4,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.730 112.6 32.5 -51.4 -16.0 19.3 0.1 12.0 12 150 C E H <>5S+ 0 0 42 -3,-0.8 4,-2.3 -5,-0.3 -2,-0.3 0.786 120.3 46.9-106.1 -46.5 20.1 -3.6 12.1 13 151 C Q H X5S+ 0 0 127 -4,-2.3 4,-2.7 2,-0.2 -3,-0.2 0.931 119.5 41.6 -61.6 -46.8 21.2 -4.3 8.5 14 152 C I H X5S+ 0 0 0 -4,-3.2 4,-3.2 2,-0.2 5,-0.3 0.924 111.3 55.5 -66.2 -45.7 23.5 -1.2 8.5 15 153 C S H >< S+ 0 0 50 -4,-2.7 3,-0.9 1,-0.3 -2,-0.2 0.916 112.7 44.2 -48.0 -50.8 27.4 -3.8 7.7 18 156 C L H >X S+ 0 0 30 -4,-3.2 3,-1.6 1,-0.2 4,-0.6 0.818 107.4 59.4 -65.1 -31.8 29.4 -1.6 10.0 19 157 C E H 3< S+ 0 0 70 -4,-2.0 -1,-0.2 -5,-0.3 -2,-0.2 0.708 101.4 55.7 -69.3 -20.0 30.1 -4.5 12.4 20 158 C K T << S- 0 0 77 -4,-1.3 -1,-0.3 -3,-0.9 -2,-0.2 0.148 135.4 -92.1 -94.0 14.6 31.7 -6.2 9.3 21 159 C G T <4 + 0 0 63 -3,-1.6 -3,-0.2 1,-0.2 -2,-0.2 0.993 67.2 167.7 71.9 69.7 33.9 -3.1 9.1 22 160 C H < - 0 0 79 -4,-0.6 2,-0.5 -8,-0.1 -1,-0.2 -0.954 37.8-114.7-118.9 137.7 32.0 -0.9 6.7 23 161 C P >> - 0 0 85 0, 0.0 4,-3.9 0, 0.0 3,-1.4 -0.585 13.0-152.3 -73.2 117.2 32.8 2.8 6.1 24 162 C R H 3> S+ 0 0 46 -2,-0.5 4,-0.8 1,-0.3 5,-0.2 0.901 97.6 60.2 -53.1 -42.8 30.0 5.1 7.3 25 163 C Q H 3> S+ 0 0 54 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.806 116.1 32.5 -56.6 -29.8 31.1 7.6 4.7 26 164 C Q H <> S+ 0 0 18 -3,-1.4 4,-1.8 2,-0.2 5,-0.3 0.817 110.1 64.2 -93.8 -37.6 30.4 5.0 2.0 27 165 C L H < S+ 0 0 9 -4,-3.9 4,-0.4 1,-0.2 6,-0.2 0.572 110.3 44.1 -61.3 -8.3 27.6 3.4 3.9 28 166 C A H X S+ 0 0 2 -4,-0.8 4,-2.5 -5,-0.3 -1,-0.2 0.829 104.7 55.4-103.1 -51.7 26.0 6.8 3.3 29 167 C I H < S+ 0 0 141 -4,-1.2 -2,-0.2 -5,-0.2 -3,-0.1 0.957 116.5 41.0 -43.7 -61.6 26.7 7.7 -0.3 30 168 C I T < S+ 0 0 139 -4,-1.8 -1,-0.2 1,-0.2 -3,-0.1 0.936 117.9 43.2 -52.9 -63.0 25.1 4.4 -1.4 31 169 C F T 4 S- 0 0 81 -4,-0.4 -2,-0.2 -5,-0.3 -1,-0.2 0.968 108.1-119.8 -51.2 -60.9 22.1 4.4 1.0 32 170 C G S < S+ 0 0 64 -4,-2.5 -3,-0.1 1,-0.5 -4,-0.1 0.141 72.4 112.0 139.8 -19.1 21.3 8.0 0.5 33 171 C I - 0 0 21 -6,-0.2 -1,-0.5 -5,-0.2 2,-0.1 -0.371 69.1-101.0 -82.4 160.8 21.6 9.5 3.9 34 172 C G >> - 0 0 39 1,-0.1 4,-1.8 -2,-0.1 3,-0.5 -0.445 27.0-114.1 -81.6 156.8 24.2 11.9 5.1 35 173 C V H 3> S+ 0 0 59 1,-0.2 4,-2.7 2,-0.2 5,-0.3 0.837 113.4 57.1 -58.3 -38.1 27.3 11.0 7.2 36 174 C S H 3> S+ 0 0 92 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.882 104.3 52.7 -63.8 -36.2 26.1 12.9 10.3 37 175 C T H X> S+ 0 0 28 -3,-0.5 4,-2.0 2,-0.2 3,-0.7 0.987 111.1 47.3 -60.9 -56.6 22.9 11.0 10.4 38 176 C L H 3X S+ 0 0 0 -4,-1.8 4,-3.0 1,-0.3 -2,-0.2 0.898 111.3 48.4 -51.9 -50.0 24.9 7.7 10.3 39 177 C Y H 3< S+ 0 0 108 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.826 110.0 56.2 -61.9 -27.0 27.4 8.7 13.0 40 178 C R H << S+ 0 0 160 -4,-1.6 -2,-0.2 -3,-0.7 -1,-0.2 0.916 113.7 37.0 -70.1 -44.5 24.4 9.8 15.1 41 179 C Y H < S+ 0 0 65 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.839 129.2 35.9 -75.7 -33.7 22.7 6.4 14.9 42 180 C F S < S- 0 0 21 -4,-3.0 -1,-0.2 -5,-0.3 4,-0.2 -0.597 80.6-159.9-124.3 75.4 26.1 4.6 15.2 43 181 C P > - 0 0 56 0, 0.0 3,-0.8 0, 0.0 -3,-0.1 -0.037 31.9-117.6 -46.9 153.8 28.5 6.4 17.5 44 182 C A T 3 S+ 0 0 84 1,-0.3 -5,-0.0 -5,-0.1 -2,-0.0 0.535 116.8 74.1 -72.6 -3.9 32.1 5.4 16.9 45 183 C S T 3 0 0 123 1,-0.2 -1,-0.3 0, 0.0 0, 0.0 -0.147 360.0 360.0 -96.6 34.1 31.7 4.3 20.5 46 184 C S < 0 0 116 -3,-0.8 -1,-0.2 -4,-0.2 -2,-0.0 -0.591 360.0 360.0-123.2 360.0 29.7 1.4 19.0