==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 13-JUL-01 1JKP . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*GP*AP*AP*GP*A)- . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 47 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3643.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 59.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 42.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 C G 0 0 132 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-138.1 7.3 15.4 12.4 2 140 C R - 0 0 235 1,-0.1 3,-0.1 0, 0.0 0, 0.0 -0.691 360.0-105.2 -82.8 128.8 9.9 14.9 9.7 3 141 C P - 0 0 110 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.217 42.3-106.6 -53.2 140.5 10.1 11.3 8.6 4 142 C R - 0 0 190 1,-0.1 3,-0.1 -3,-0.0 0, 0.0 -0.033 19.7-121.6 -61.1 173.2 13.1 9.5 10.0 5 143 C A S S+ 0 0 42 1,-0.3 2,-0.3 -3,-0.1 -1,-0.1 0.781 89.3 13.9 -89.3 -29.6 16.1 8.6 7.7 6 144 C I - 0 0 2 4,-0.0 -1,-0.3 3,-0.0 2,-0.1 -0.975 69.4-133.3-153.1 134.5 16.0 4.9 8.3 7 145 C N > - 0 0 83 -2,-0.3 4,-4.1 -3,-0.1 5,-0.2 -0.286 41.2 -93.0 -80.4 167.9 13.7 2.2 9.8 8 146 C K H > S+ 0 0 162 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.867 128.2 51.0 -48.1 -44.2 14.5 -0.6 12.3 9 147 C H H > S+ 0 0 138 2,-0.2 4,-3.2 1,-0.2 -1,-0.2 0.957 114.1 43.1 -58.4 -53.1 15.1 -3.0 9.3 10 148 C E H > S+ 0 0 49 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.929 112.1 55.1 -58.2 -46.5 17.4 -0.5 7.7 11 149 C Q H X S+ 0 0 57 -4,-4.1 4,-3.4 2,-0.2 -1,-0.2 0.893 111.8 43.7 -53.9 -44.1 19.0 0.2 11.1 12 150 C E H X S+ 0 0 105 -4,-2.7 4,-2.5 -5,-0.2 5,-0.3 0.970 112.1 50.9 -63.7 -60.2 19.7 -3.5 11.4 13 151 C Q H X S+ 0 0 93 -4,-3.2 4,-2.7 1,-0.2 3,-0.4 0.948 118.1 40.9 -41.4 -57.3 20.9 -4.0 8.0 14 152 C I H X S+ 0 0 0 -4,-3.4 4,-3.3 1,-0.2 5,-0.3 0.934 109.6 55.3 -60.2 -52.5 23.2 -1.0 8.5 15 153 C S H X S+ 0 0 52 -4,-3.4 4,-0.7 -5,-0.3 -1,-0.2 0.823 112.9 45.7 -52.8 -31.7 24.3 -1.9 12.1 16 154 C R H >X S+ 0 0 153 -4,-2.5 3,-1.1 -3,-0.4 4,-0.7 0.961 112.3 48.9 -75.0 -54.5 25.4 -5.2 10.7 17 155 C L H ><>S+ 0 0 43 -4,-2.7 5,-2.0 -5,-0.3 3,-0.9 0.852 109.6 54.2 -52.0 -38.0 27.2 -3.8 7.6 18 156 C L H 3<5S+ 0 0 13 -4,-3.3 3,-0.5 1,-0.2 -1,-0.3 0.800 106.9 51.2 -68.0 -28.3 28.9 -1.3 9.9 19 157 C E H <<5S+ 0 0 70 -3,-1.1 -1,-0.2 -4,-0.7 -2,-0.2 0.495 101.9 60.4 -88.4 -1.9 30.2 -4.2 12.0 20 158 C K T <<5S- 0 0 171 -3,-0.9 -1,-0.2 -4,-0.7 -2,-0.2 0.516 128.5 -94.0 -95.9 -10.7 31.5 -6.0 9.0 21 159 C G T 5S+ 0 0 61 -3,-0.5 -3,-0.2 -4,-0.4 -2,-0.1 0.396 70.4 153.8 114.3 -1.8 33.8 -3.0 8.3 22 160 C H < - 0 0 77 -5,-2.0 -1,-0.3 -8,-0.1 2,-0.1 -0.408 46.5-118.3 -63.5 130.4 31.8 -0.9 5.9 23 161 C P > - 0 0 72 0, 0.0 4,-2.2 0, 0.0 3,-0.5 -0.436 10.2-132.0 -70.0 138.3 32.7 2.8 6.1 24 162 C R H > S+ 0 0 32 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.847 107.1 63.3 -59.7 -31.6 30.0 5.1 7.1 25 163 C Q H > S+ 0 0 133 2,-0.2 4,-2.0 3,-0.2 -1,-0.2 0.938 109.3 39.5 -57.8 -45.6 30.9 7.3 4.2 26 164 C Q H > S+ 0 0 29 -3,-0.5 4,-2.7 2,-0.2 3,-0.3 0.991 114.7 49.5 -65.6 -63.6 30.0 4.6 1.8 27 165 C L H X S+ 0 0 2 -4,-2.2 4,-3.1 1,-0.2 -1,-0.2 0.793 111.0 55.3 -43.7 -36.1 26.9 3.3 3.6 28 166 C A H <>S+ 0 0 5 -4,-2.3 5,-2.2 -5,-0.3 4,-0.4 0.950 108.3 44.4 -64.9 -53.4 25.9 7.0 3.7 29 167 C I H ><5S+ 0 0 141 -4,-2.0 3,-0.6 -3,-0.3 -2,-0.2 0.900 119.2 46.8 -57.5 -41.9 26.1 7.5 -0.0 30 168 C I H 3<5S+ 0 0 119 -4,-2.7 -2,-0.2 1,-0.2 -3,-0.2 0.979 110.2 45.7 -67.5 -61.3 24.3 4.2 -0.5 31 169 C F T 3<5S- 0 0 39 -4,-3.1 -1,-0.2 -5,-0.1 -2,-0.2 0.354 112.0-113.2 -68.3 9.7 21.4 4.4 1.9 32 170 C G T < 5S+ 0 0 66 -3,-0.6 2,-0.3 -4,-0.4 -3,-0.2 0.915 79.0 112.7 60.5 43.7 20.6 7.9 0.7 33 171 C I < - 0 0 23 -5,-2.2 -1,-0.2 -6,-0.2 -2,-0.1 -0.993 67.5 -99.8-146.5 151.8 21.5 9.6 4.0 34 172 C G >> - 0 0 41 -2,-0.3 4,-1.4 1,-0.1 3,-0.8 -0.352 27.2-119.9 -74.4 151.7 24.2 11.9 5.4 35 173 C V H 3> S+ 0 0 41 1,-0.3 4,-2.2 2,-0.2 5,-0.3 0.857 110.5 57.3 -57.5 -44.6 27.2 10.9 7.3 36 174 C S H 3> S+ 0 0 95 1,-0.2 4,-1.1 2,-0.2 -1,-0.3 0.851 103.6 57.7 -57.9 -31.0 26.5 12.9 10.4 37 175 C T H X> S+ 0 0 26 -3,-0.8 4,-2.4 1,-0.2 3,-0.5 0.946 106.2 47.7 -63.6 -48.3 23.2 11.0 10.6 38 176 C L H 3X S+ 0 0 0 -4,-1.4 4,-2.6 1,-0.3 -2,-0.2 0.924 107.4 53.6 -59.2 -47.0 25.0 7.6 10.7 39 177 C Y H 3< S+ 0 0 107 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.802 110.5 51.6 -58.8 -24.8 27.4 8.7 13.4 40 178 C R H << S+ 0 0 165 -4,-1.1 -2,-0.2 -3,-0.5 -1,-0.2 0.927 112.8 40.9 -76.6 -50.0 24.3 9.6 15.3 41 179 C Y H < S+ 0 0 42 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.698 135.9 20.2 -70.9 -19.4 22.5 6.3 14.8 42 180 C F S < S- 0 0 15 -4,-2.6 -1,-0.3 -5,-0.2 -2,-0.1 -0.648 77.5-153.0-152.6 91.7 25.9 4.5 15.5 43 181 C P > - 0 0 53 0, 0.0 3,-3.2 0, 0.0 -3,-0.1 -0.349 29.3-119.2 -61.9 143.9 28.7 6.3 17.3 44 182 C A T 3 S+ 0 0 70 1,-0.3 3,-0.4 2,-0.1 -5,-0.0 0.755 121.6 55.2 -58.2 -20.1 32.1 5.0 16.3 45 183 C S T 3 S+ 0 0 120 1,-0.2 -1,-0.3 2,-0.1 0, 0.0 0.105 95.6 71.5 -96.8 20.4 32.3 4.2 20.0 46 184 C S < 0 0 56 -3,-3.2 -1,-0.2 -4,-0.1 -2,-0.1 -0.235 360.0 360.0-125.9 41.3 29.1 2.2 19.6 47 185 C I 0 0 113 -3,-0.4 -2,-0.1 -5,-0.1 -3,-0.1 0.591 360.0 360.0-139.7 360.0 30.5 -0.7 17.6