==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 13-JUL-01 1JKQ . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*TP*TP*TP*TP*TP*AP*TP*AP*AP*GP*A)- . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3339.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 65.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 17.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 43.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 140 C R 0 0 283 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 136.5 9.5 14.5 9.8 2 141 C P - 0 0 114 0, 0.0 4,-0.0 0, 0.0 0, 0.0 -0.396 360.0-104.2 -63.2 125.6 10.0 10.9 8.9 3 142 C R - 0 0 170 -2,-0.2 3,-0.2 1,-0.1 0, 0.0 0.026 33.0-111.7 -40.6 156.6 13.2 9.4 10.4 4 143 C A S S+ 0 0 51 1,-0.2 2,-0.3 -3,-0.1 -1,-0.1 0.798 97.8 18.3 -68.7 -30.4 15.9 9.0 7.8 5 144 C I S S- 0 0 1 27,-0.0 -1,-0.2 3,-0.0 5,-0.2 -0.924 82.0-116.5-149.9 123.1 15.8 5.1 7.8 6 145 C N > - 0 0 87 -2,-0.3 4,-1.3 -3,-0.2 -2,-0.0 0.049 41.0 -98.7 -46.9 159.9 13.1 2.7 9.1 7 146 C K H >> S+ 0 0 74 1,-0.2 3,-1.8 2,-0.2 4,-1.6 0.939 121.2 56.4 -49.3 -59.5 14.0 0.3 11.9 8 147 C H H 3> S+ 0 0 133 1,-0.3 4,-2.4 2,-0.2 -1,-0.2 0.881 102.6 55.3 -38.2 -60.8 14.8 -2.6 9.7 9 148 C E H 3> S+ 0 0 43 1,-0.3 4,-3.8 2,-0.2 5,-0.3 0.813 104.3 56.1 -44.8 -37.3 17.4 -0.6 7.7 10 149 C Q H X S+ 0 0 45 -4,-1.3 3,-3.0 -5,-0.4 4,-0.9 0.973 109.5 47.0 -60.8 -85.7 25.5 -5.0 10.5 16 155 C L H >X S+ 0 0 48 -4,-1.5 3,-1.6 1,-0.3 4,-0.7 0.747 111.4 55.6 -23.6 -52.2 27.5 -3.7 7.6 17 156 C L H >< S+ 0 0 18 -4,-3.0 3,-0.8 1,-0.3 -1,-0.3 0.872 106.9 48.4 -54.3 -42.3 29.0 -1.1 9.9 18 157 C E H << S+ 0 0 119 -3,-3.0 -1,-0.3 -4,-1.5 -2,-0.2 0.498 110.5 52.0 -77.6 -7.8 30.3 -3.8 12.3 19 158 C K H << S- 0 0 107 -3,-1.6 -1,-0.2 -4,-0.9 2,-0.2 0.424 127.6 -92.3-104.2 -4.0 31.7 -5.8 9.4 20 159 C G << + 0 0 52 -3,-0.8 -3,-0.1 -4,-0.7 -4,-0.0 -0.584 68.7 144.4 137.1 -80.6 33.7 -2.8 8.1 21 160 C H - 0 0 100 -2,-0.2 2,-0.3 1,-0.1 -1,-0.2 0.602 54.8 -98.8 3.4 138.7 32.0 -0.7 5.4 22 161 C P >> - 0 0 71 0, 0.0 4,-1.6 0, 0.0 3,-1.0 -0.575 17.3-126.5 -83.0 131.4 32.6 3.1 5.4 23 162 C R T 34 S+ 0 0 37 -2,-0.3 4,-0.3 1,-0.2 14,-0.2 0.452 109.1 57.4 -49.6 1.5 30.1 5.5 7.0 24 163 C Q T 3> S+ 0 0 131 3,-0.1 4,-3.0 2,-0.1 -1,-0.2 0.821 101.8 45.1-104.6 -41.6 30.3 7.3 3.5 25 164 C Q H <> S+ 0 0 51 -3,-1.0 4,-4.1 2,-0.2 5,-0.3 0.973 117.2 48.2 -63.9 -52.5 29.3 4.6 1.0 26 165 C L H X S+ 0 0 3 -4,-1.6 4,-3.3 1,-0.2 5,-0.3 0.954 112.1 49.0 -48.5 -58.2 26.4 3.6 3.3 27 166 C A H 4>S+ 0 0 5 -5,-0.3 5,-3.2 -4,-0.3 4,-0.2 0.934 119.0 40.7 -45.3 -55.2 25.4 7.3 3.6 28 167 C I H ><5S+ 0 0 121 -4,-3.0 3,-2.4 3,-0.2 -2,-0.2 0.988 117.3 44.6 -56.9 -69.6 25.7 7.6 -0.2 29 168 C I H 3<5S+ 0 0 126 -4,-4.1 -2,-0.2 1,-0.3 -3,-0.2 0.904 118.4 43.6 -42.5 -59.2 24.0 4.3 -1.1 30 169 C F T 3<5S- 0 0 46 -4,-3.3 -1,-0.3 -5,-0.3 -2,-0.2 0.421 111.9-122.6 -69.2 -1.0 21.1 4.7 1.4 31 170 C G T < 5 + 0 0 66 -3,-2.4 2,-0.4 -5,-0.3 -3,-0.2 0.879 68.5 125.6 61.6 39.7 20.8 8.4 0.4 32 171 C I < - 0 0 18 -5,-3.2 -1,-0.2 -6,-0.3 -2,-0.1 -0.993 64.3-102.6-135.4 136.8 21.4 9.8 3.8 33 172 C G >> - 0 0 42 -2,-0.4 4,-1.3 1,-0.1 3,-0.9 -0.201 28.1-121.2 -56.4 142.0 23.9 12.3 5.1 34 173 C V H 3> S+ 0 0 45 1,-0.3 4,-2.2 2,-0.2 5,-0.3 0.831 109.8 59.4 -50.2 -43.3 26.9 11.1 7.0 35 174 C S H 3> S+ 0 0 92 1,-0.3 4,-1.4 2,-0.2 -1,-0.3 0.892 100.1 57.1 -55.2 -42.9 26.1 13.2 10.1 36 175 C T H <> S+ 0 0 43 -3,-0.9 4,-2.5 1,-0.2 3,-0.4 0.932 106.8 50.6 -54.5 -46.6 22.8 11.4 10.4 37 176 C L H X S+ 0 0 0 -4,-1.3 4,-3.4 1,-0.3 -2,-0.2 0.953 105.6 51.1 -60.1 -53.4 24.7 8.1 10.5 38 177 C Y H < S+ 0 0 117 -4,-2.2 -1,-0.3 1,-0.2 -2,-0.2 0.791 112.1 54.6 -55.4 -21.7 27.2 9.1 13.3 39 178 C R H < S+ 0 0 169 -4,-1.4 -2,-0.2 -3,-0.4 -1,-0.2 0.974 112.6 36.5 -74.6 -59.0 23.9 10.1 15.1 40 179 C Y H < S+ 0 0 45 -4,-2.5 -2,-0.2 1,-0.3 -3,-0.2 0.936 135.4 25.9 -58.3 -47.3 22.1 6.8 14.8 41 180 C F S < S- 0 0 17 -4,-3.4 -1,-0.3 -5,-0.2 -2,-0.1 -0.731 83.0-155.9-123.2 86.1 25.4 4.9 15.3 42 181 C P - 0 0 55 0, 0.0 3,-0.3 0, 0.0 -3,-0.1 -0.161 26.2-119.7 -55.1 151.8 28.0 6.8 17.2 43 182 C A S > S+ 0 0 64 1,-0.3 2,-3.1 -5,-0.1 3,-0.5 0.953 112.6 64.6 -57.8 -49.8 31.6 5.8 16.6 44 183 C S T 3 S+ 0 0 119 1,-0.2 -1,-0.3 2,-0.1 0, 0.0 -0.280 93.6 65.5 -72.3 58.7 31.9 5.0 20.3 45 184 C S T 3 0 0 63 -2,-3.1 -1,-0.2 -3,-0.3 -2,-0.1 0.039 360.0 360.0-169.7 39.4 29.3 2.2 19.9 46 185 C I < 0 0 106 -3,-0.5 -2,-0.1 -29,-0.0 -3,-0.1 0.554 360.0 360.0-143.0 360.0 30.9 -0.4 17.7