==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 13-JUL-01 1JKR . COMPND 2 MOLECULE: 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*CP*AP*AP*GP*A)- . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.K.CHIU,C.SOHN,R.C.JOHNSON,R.E.DICKERSON . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3456.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 65.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 17.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 43.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 139 C G 0 0 133 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -68.2 6.7 15.4 11.8 2 140 C R - 0 0 235 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.517 360.0-116.7 -74.1 133.9 9.8 14.7 9.6 3 141 C P - 0 0 106 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.211 31.9 -97.8 -65.4 157.1 10.4 11.1 8.8 4 142 C R - 0 0 185 1,-0.1 3,-0.2 0, 0.0 0, 0.0 -0.400 23.8-126.4 -75.7 154.1 13.6 9.2 9.9 5 143 C A S S+ 0 0 50 1,-0.3 2,-0.4 -2,-0.1 -1,-0.1 0.873 95.2 17.1 -68.3 -38.0 16.5 8.8 7.5 6 144 C I S S- 0 0 2 1,-0.2 -1,-0.3 3,-0.0 25,-0.0 -0.993 73.0-147.1-140.1 131.3 16.6 5.0 7.9 7 145 C N - 0 0 84 -2,-0.4 -1,-0.2 -3,-0.2 -2,-0.1 0.641 43.0 -84.7 -65.6-135.5 14.0 2.7 9.4 8 146 C K S > S+ 0 0 101 3,-0.1 4,-2.8 2,-0.1 5,-0.5 0.776 118.1 62.2-106.9 -47.6 14.8 -0.5 11.3 9 147 C H H >> S+ 0 0 73 1,-0.3 4,-2.7 2,-0.2 3,-0.7 0.945 120.9 28.0 -38.7 -69.7 15.3 -3.1 8.6 10 148 C E H 3> S+ 0 0 51 1,-0.2 4,-2.7 2,-0.2 5,-0.3 0.686 111.9 70.9 -69.8 -21.6 18.2 -1.0 7.2 11 149 C Q H 3> S+ 0 0 59 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.889 114.5 26.0 -64.2 -36.9 18.9 0.4 10.7 12 150 C E H X S+ 0 0 1 -4,-2.7 4,-2.0 2,-0.2 3,-0.9 0.962 113.9 52.1 -57.6 -57.9 23.5 -1.1 8.4 15 153 C S H 3X S+ 0 0 55 -4,-1.4 4,-1.4 -5,-0.3 3,-0.5 0.933 109.3 49.7 -44.9 -56.9 24.5 -1.7 11.9 16 154 C R H 3X S+ 0 0 174 -4,-4.0 4,-0.7 1,-0.2 -1,-0.3 0.809 110.0 55.1 -52.6 -32.4 25.4 -5.3 11.1 17 155 C L H X< S+ 0 0 47 -4,-1.5 3,-0.9 -3,-0.9 -1,-0.2 0.897 99.7 55.5 -69.5 -44.8 27.4 -4.0 8.2 18 156 C L H >X S+ 0 0 33 -4,-2.0 3,-1.6 -3,-0.5 4,-0.6 0.835 102.0 59.8 -58.0 -34.7 29.6 -1.6 10.2 19 157 C E H 3< S+ 0 0 93 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.791 98.8 57.3 -64.1 -30.9 30.7 -4.5 12.4 20 158 C K T << S- 0 0 73 -3,-0.9 -1,-0.3 -4,-0.7 -2,-0.2 0.239 130.3 -96.9 -83.6 14.7 32.0 -6.2 9.2 21 159 C G T <4 + 0 0 62 -3,-1.6 -3,-0.2 1,-0.2 -2,-0.2 0.995 64.0 162.2 70.8 66.8 34.2 -3.1 8.8 22 160 C H < - 0 0 77 -4,-0.6 2,-0.5 -5,-0.1 -1,-0.2 -0.926 40.7-111.9-117.2 146.5 32.5 -0.8 6.3 23 161 C P >> - 0 0 50 0, 0.0 4,-2.4 0, 0.0 3,-1.8 -0.635 11.2-147.7 -79.6 120.5 33.3 2.8 5.9 24 162 C R H 3> S+ 0 0 43 -2,-0.5 4,-2.8 1,-0.3 5,-0.3 0.917 98.4 66.6 -50.0 -44.6 30.6 5.2 7.0 25 163 C Q H 3> S+ 0 0 121 1,-0.2 4,-0.7 2,-0.2 -1,-0.3 0.826 110.6 35.3 -42.7 -40.0 31.7 7.5 4.2 26 164 C Q H <> S+ 0 0 121 -3,-1.8 4,-2.0 2,-0.2 3,-0.5 0.906 112.7 55.6 -83.9 -49.0 30.4 5.0 1.8 27 165 C L H X S+ 0 0 5 -4,-2.4 4,-2.4 1,-0.2 6,-0.2 0.908 105.8 55.9 -49.9 -45.3 27.4 3.6 3.6 28 166 C A H <>S+ 0 0 2 -4,-2.8 5,-3.1 -5,-0.2 -1,-0.2 0.877 108.1 46.5 -56.6 -42.9 26.1 7.2 3.8 29 167 C I H <5S+ 0 0 119 -4,-0.7 3,-0.5 -3,-0.5 -1,-0.2 0.860 113.2 47.3 -70.8 -37.0 26.3 7.7 0.1 30 168 C I H <5S+ 0 0 125 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.972 116.3 43.2 -66.0 -55.7 24.6 4.4 -0.9 31 169 C F T <5S- 0 0 52 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.385 113.6-123.8 -73.0 4.0 21.8 4.8 1.5 32 170 C G T 5 + 0 0 65 -3,-0.5 2,-0.3 1,-0.2 -3,-0.2 0.797 66.8 125.5 55.9 36.4 21.6 8.5 0.4 33 171 C I < - 0 0 23 -5,-3.1 -1,-0.2 -6,-0.2 -2,-0.1 -0.887 64.3 -94.2-127.5 157.3 22.1 9.9 3.9 34 172 C G >> - 0 0 36 -2,-0.3 4,-1.4 1,-0.1 3,-0.6 -0.341 26.4-129.6 -67.4 146.5 24.3 12.3 5.6 35 173 C V H 3> S+ 0 0 35 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.870 108.2 59.4 -64.3 -33.9 27.4 11.1 7.4 36 174 C S H 3> S+ 0 0 86 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.842 100.8 58.0 -61.5 -30.7 26.5 13.0 10.6 37 175 C T H X> S+ 0 0 22 -3,-0.6 4,-1.8 1,-0.2 3,-0.8 0.942 106.3 48.1 -65.1 -46.5 23.3 11.1 10.6 38 176 C L H 3X S+ 0 0 3 -4,-1.4 4,-2.6 1,-0.3 -2,-0.2 0.868 105.9 53.7 -63.9 -41.9 25.2 7.8 10.7 39 177 C Y H 3< S+ 0 0 121 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.691 110.2 54.3 -68.0 -13.3 27.6 8.8 13.5 40 178 C R H << S+ 0 0 162 -3,-0.8 -2,-0.2 -4,-0.6 -1,-0.2 0.895 111.7 37.7 -85.2 -46.5 24.4 9.6 15.3 41 179 C Y H < S+ 0 0 43 -4,-1.8 -2,-0.2 1,-0.3 -3,-0.2 0.884 134.8 25.7 -70.9 -39.3 22.6 6.3 15.0 42 180 C F S < S- 0 0 17 -4,-2.6 -1,-0.3 -5,-0.2 4,-0.1 -0.856 81.7-159.3-129.6 96.7 25.8 4.4 15.4 43 181 C P > - 0 0 56 0, 0.0 3,-0.8 0, 0.0 -3,-0.1 -0.288 34.9-111.0 -69.0 159.4 28.6 6.2 17.4 44 182 C A T 3 S+ 0 0 85 1,-0.3 -5,-0.0 -5,-0.1 -2,-0.0 0.354 118.7 75.3 -71.4 8.3 32.3 5.2 17.0 45 183 C S T 3 0 0 121 1,-0.1 -1,-0.3 0, 0.0 0, 0.0 -0.132 360.0 360.0-107.6 35.1 31.7 4.1 20.5 46 184 C S < 0 0 120 -3,-0.8 -1,-0.1 -4,-0.1 -2,-0.0 -0.548 360.0 360.0-127.6 360.0 29.7 1.1 19.1