==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 09-SEP-08 2JLI . COMPND 2 MOLECULE: YOP PROTEINS TRANSLOCATION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; . AUTHOR G.T.LOUNTOS,B.P.AUSTIN,S.NALLAMSETTY,D.S.WAUGH . 100 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5849.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 74.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 15.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 39.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 240 A Q > 0 0 110 0, 0.0 4,-2.3 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -41.7 -1.8 -38.0 -6.2 2 241 A F H > + 0 0 174 2,-0.2 4,-1.9 1,-0.2 5,-0.2 0.943 360.0 44.0 -60.5 -49.4 -1.0 -38.5 -2.5 3 242 A H H > S+ 0 0 50 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.847 110.3 55.8 -66.0 -38.2 1.5 -35.7 -2.6 4 243 A Q H > S+ 0 0 54 2,-0.2 4,-1.5 1,-0.2 -2,-0.2 0.953 109.2 47.2 -55.7 -51.8 -0.9 -33.5 -4.6 5 244 A E H X S+ 0 0 46 -4,-2.3 4,-0.9 1,-0.2 -2,-0.2 0.849 111.8 48.4 -61.7 -40.1 -3.5 -33.9 -1.8 6 245 A I H X S+ 0 0 81 -4,-1.9 4,-2.8 1,-0.2 -1,-0.2 0.928 109.7 53.5 -65.7 -44.3 -1.1 -33.1 1.0 7 246 A Q H X S+ 0 0 38 -4,-2.4 4,-2.1 2,-0.2 -2,-0.2 0.839 112.8 46.6 -58.7 -29.2 0.2 -30.0 -0.9 8 247 A S H X S+ 0 0 61 -4,-1.5 4,-1.7 1,-0.2 -2,-0.1 0.917 111.1 48.7 -72.2 -56.2 -3.5 -28.8 -1.2 9 248 A R H X S+ 0 0 29 -4,-0.9 4,-2.7 2,-0.3 -1,-0.2 0.715 109.9 49.4 90.0-109.3 -4.2 -29.4 1.9 10 249 A N H X S+ 0 0 77 -4,-2.8 4,-2.4 2,-0.2 -2,-0.2 0.896 109.3 54.7 -57.5 -45.0 -1.2 -27.6 3.3 11 250 A M H X S+ 0 0 13 -4,-2.1 4,-2.4 2,-0.2 -2,-0.3 0.939 109.6 46.0 -60.3 -48.1 -1.9 -24.6 1.1 12 251 A R H X S+ 0 0 73 -4,-1.7 4,-2.8 1,-0.2 5,-0.2 0.921 111.7 50.9 -64.4 -40.3 -5.4 -24.2 2.4 13 252 A E H X S+ 0 0 128 -4,-2.7 4,-1.7 1,-0.2 -1,-0.2 0.920 111.4 49.8 -60.0 -41.2 -4.3 -24.6 6.0 14 253 A N H < S+ 0 0 35 -4,-2.4 4,-0.2 2,-0.2 -2,-0.2 0.884 112.3 46.5 -63.3 -44.0 -1.7 -22.0 5.4 15 254 A V H >< S+ 0 0 0 -4,-2.4 3,-1.7 1,-0.2 -2,-0.2 0.947 112.0 50.5 -62.6 -49.0 -4.2 -19.6 3.8 16 255 A K H 3< S+ 0 0 129 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.794 106.1 55.2 -63.4 -30.9 -6.7 -20.1 6.6 17 256 A R T 3< S+ 0 0 95 -4,-1.7 2,-0.3 -5,-0.2 -1,-0.3 0.471 96.1 93.1 -78.4 -2.3 -4.1 -19.4 9.3 18 257 A S < - 0 0 12 -3,-1.7 16,-0.3 -4,-0.2 3,-0.1 -0.671 63.5-153.1 -94.6 149.3 -3.3 -16.1 7.7 19 258 A S S S- 0 0 42 14,-2.4 2,-0.3 1,-0.3 15,-0.2 0.821 83.3 -10.2 -77.4 -41.1 -4.7 -12.6 8.4 20 259 A V E -A 33 0A 2 13,-1.7 13,-2.6 46,-0.1 2,-0.4 -0.972 60.5-135.3-153.7 159.6 -4.0 -11.4 4.9 21 260 A V E -Ab 32 68A 0 46,-2.4 48,-2.7 -2,-0.3 2,-0.4 -0.984 15.0-155.7-119.2 133.8 -2.2 -12.4 1.8 22 261 A V E -Ab 31 69A 0 9,-2.8 9,-2.8 -2,-0.4 2,-0.3 -0.918 21.8-174.7-111.4 139.9 0.0 -10.0 -0.2 23 262 A A E Ab 30 70A 0 46,-2.6 48,-1.9 -2,-0.4 52,-0.2 -0.895 360.0 360.0-135.7 156.7 0.6 -10.7 -3.8 24 263 A N 0 0 28 5,-2.4 5,-2.2 -2,-0.3 30,-0.1 -0.993 360.0 360.0-125.5 360.0 2.4 -9.8 -7.0 25 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 26 264 A P 0 0 46 0, 0.0 3,-0.1 0, 0.0 24,-0.0 0.000 360.0 360.0 360.0 157.3 9.8 -15.0 -9.4 27 265 A T + 0 0 91 1,-0.3 2,-0.3 -3,-0.0 23,-0.0 0.849 360.0 24.0 -90.1 -49.5 7.1 -13.8 -11.7 28 266 A H S S- 0 0 92 2,-0.0 23,-2.1 -5,-0.0 2,-0.3 -0.903 70.7-172.8-119.2 148.8 4.2 -14.1 -9.3 29 267 A I E - C 0 50A 0 -5,-2.2 -5,-2.4 -2,-0.3 2,-0.4 -0.999 11.0-177.5-140.2 140.9 4.4 -14.1 -5.5 30 268 A A E -AC 23 49A 0 19,-2.6 19,-2.6 -2,-0.3 2,-0.4 -0.973 9.7-178.0-135.8 127.4 1.9 -14.7 -2.7 31 269 A I E -AC 22 48A 0 -9,-2.8 -9,-2.8 -2,-0.4 2,-0.3 -0.981 16.5-141.9-128.0 130.6 2.9 -14.4 0.9 32 270 A G E -AC 21 47A 0 15,-1.8 14,-2.2 -2,-0.4 15,-0.8 -0.694 14.7-165.9 -88.8 143.7 0.8 -15.0 3.9 33 271 A I E -AC 20 45A 0 -13,-2.6 -14,-2.4 -2,-0.3 -13,-1.7 -0.997 4.1-164.2-131.8 131.6 0.9 -12.8 7.0 34 272 A L E + C 0 44A 32 10,-2.7 10,-2.7 -2,-0.4 2,-0.4 -0.966 13.1 168.5-113.0 131.4 -0.5 -13.6 10.5 35 273 A Y + 0 0 54 -2,-0.5 2,-0.4 8,-0.2 -2,-0.0 -0.946 4.8 169.3-141.2 119.9 -0.9 -10.9 13.1 36 274 A K >> - 0 0 116 -2,-0.4 3,-2.7 6,-0.2 4,-2.3 -0.905 35.0-131.3-130.3 96.4 -2.9 -11.5 16.3 37 275 A R T 34 S+ 0 0 208 -2,-0.4 -2,-0.0 1,-0.3 5,-0.0 -0.289 93.3 24.5 -59.1 127.8 -2.4 -8.6 18.7 38 276 A G T 34 S+ 0 0 85 2,-0.3 -1,-0.3 -2,-0.0 0, 0.0 0.016 127.1 49.2 103.6 -25.1 -1.5 -9.9 22.1 39 277 A E T <4 S+ 0 0 110 -3,-2.7 -2,-0.2 1,-0.3 3,-0.1 0.764 109.6 42.9-105.7 -55.4 -0.2 -13.2 20.8 40 278 A T < - 0 0 6 -4,-2.3 -2,-0.3 1,-0.2 -1,-0.3 -0.828 64.7-160.0 -96.4 115.2 2.2 -12.3 17.9 41 279 A P S S+ 0 0 104 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.869 83.9 12.2 -61.1 -36.9 4.5 -9.4 18.9 42 280 A L S S- 0 0 61 -3,-0.1 -6,-0.2 -8,-0.1 -8,-0.1 -0.935 101.5 -84.4-127.5 159.8 5.1 -8.7 15.2 43 281 A P - 0 0 10 0, 0.0 45,-2.5 0, 0.0 2,-0.4 -0.293 46.0-147.5 -58.8 146.6 3.4 -10.1 12.2 44 282 A L E -CD 34 87A 22 -10,-2.7 -10,-2.7 43,-0.3 2,-0.5 -0.906 14.2-116.4-121.0 148.9 4.7 -13.5 11.0 45 283 A V E -C 33 0A 0 41,-2.2 40,-3.1 38,-0.5 -12,-0.3 -0.718 26.8-177.7 -82.9 125.4 5.1 -15.0 7.6 46 284 A T E - 0 0 1 -14,-2.2 2,-0.3 -2,-0.5 -13,-0.2 0.696 62.0 -11.2 -96.1 -26.1 2.8 -18.0 7.2 47 285 A F E -C 32 0A 4 -15,-0.8 -15,-1.8 2,-0.0 2,-0.3 -0.974 47.5-149.9-166.8 161.0 3.7 -19.1 3.7 48 286 A K E +C 31 0A 53 -2,-0.3 2,-0.3 -17,-0.2 -17,-0.2 -0.952 21.1 172.0-142.0 119.4 5.5 -18.1 0.5 49 287 A Y E -C 30 0A 42 -19,-2.6 -19,-2.6 -2,-0.3 2,-0.3 -0.934 9.0-168.1-123.0 151.0 4.3 -19.4 -2.9 50 288 A T E > -C 29 0A 36 -2,-0.3 3,-1.7 -21,-0.2 -21,-0.2 -0.899 43.7 -14.7-133.8 162.7 5.5 -18.3 -6.4 51 289 A D T >> S+ 0 0 64 -23,-2.1 3,-1.7 -2,-0.3 4,-0.5 -0.121 125.5 12.7 54.2-127.5 4.7 -18.6 -10.0 52 290 A A H >> S+ 0 0 70 1,-0.3 4,-0.6 2,-0.2 3,-0.5 0.779 123.8 60.6 -58.7 -28.2 2.1 -21.3 -10.9 53 291 A Q H <> S+ 0 0 98 -3,-1.7 4,-2.0 1,-0.2 3,-0.4 0.750 87.4 75.0 -71.7 -19.9 1.0 -21.8 -7.3 54 292 A V H <> S+ 0 0 2 -3,-1.7 4,-2.5 1,-0.2 -1,-0.2 0.873 88.3 57.6 -64.2 -37.0 -0.1 -18.3 -6.9 55 293 A Q H S+ 0 0 0 -4,-2.9 5,-2.0 -5,-0.2 4,-1.0 0.917 109.6 50.8 -57.2 -43.2 -8.2 -17.1 -0.3 62 300 A E H ><5S+ 0 0 78 -4,-2.2 3,-0.7 -5,-0.2 -2,-0.2 0.935 111.5 47.5 -60.4 -48.3 -11.3 -16.1 -2.1 63 301 A E H 3<5S+ 0 0 135 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.891 116.8 43.3 -57.1 -41.7 -13.2 -19.3 -0.9 64 302 A E H 3<5S- 0 0 65 -4,-2.4 -1,-0.2 -5,-0.1 -2,-0.2 0.506 108.5-120.1 -86.7 -6.9 -12.0 -18.8 2.6 65 303 A G T <<5 + 0 0 63 -4,-1.0 -3,-0.2 -3,-0.7 -4,-0.1 0.754 61.3 147.3 71.6 24.9 -12.6 -15.0 2.8 66 304 A V < - 0 0 16 -5,-2.0 -1,-0.3 -6,-0.2 -46,-0.1 -0.818 52.1-118.2 -90.3 123.7 -9.0 -14.2 3.5 67 305 A P - 0 0 74 0, 0.0 -46,-2.4 0, 0.0 2,-0.5 -0.310 25.1-161.1 -70.1 145.0 -8.2 -10.9 1.9 68 306 A I E -b 21 0A 52 -48,-0.2 2,-0.4 -36,-0.0 -46,-0.2 -0.995 8.7-168.1-126.2 122.5 -5.6 -10.8 -0.7 69 307 A L E -b 22 0A 34 -48,-2.7 -46,-2.6 -2,-0.5 2,-0.9 -0.937 24.8-126.2-117.3 136.0 -4.0 -7.5 -1.6 70 308 A Q E +b 23 0A 136 -2,-0.4 2,-0.3 -48,-0.2 -46,-0.2 -0.714 45.4 153.4 -81.6 107.6 -1.8 -6.6 -4.5 71 309 A R > + 0 0 83 -48,-1.9 4,-2.7 -2,-0.9 5,-0.2 -0.783 15.4 178.7-139.7 83.7 1.2 -5.0 -2.8 72 310 A I H > S+ 0 0 65 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.945 75.8 44.4 -68.3 -50.9 4.1 -5.6 -5.2 73 311 A P H > S+ 0 0 105 0, 0.0 4,-2.5 0, 0.0 -1,-0.2 0.922 117.3 47.6 -59.8 -40.8 7.0 -4.0 -3.4 74 312 A L H > S+ 0 0 11 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.923 110.7 50.5 -66.6 -43.0 6.0 -5.6 -0.1 75 313 A A H X S+ 0 0 0 -4,-2.7 4,-2.2 -52,-0.2 -1,-0.2 0.917 113.3 47.1 -59.2 -43.4 5.6 -9.0 -1.7 76 314 A R H X S+ 0 0 73 -4,-2.4 4,-2.2 -5,-0.2 5,-0.3 0.921 112.5 48.5 -63.9 -45.4 9.0 -8.7 -3.3 77 315 A A H X S+ 0 0 16 -4,-2.5 4,-2.9 -5,-0.2 5,-0.3 0.907 113.4 46.3 -64.9 -42.5 10.6 -7.5 -0.1 78 316 A L H X S+ 0 0 0 -4,-2.9 4,-1.7 3,-0.2 -1,-0.2 0.881 109.8 56.0 -67.9 -36.6 9.1 -10.3 2.0 79 317 A Y H < S+ 0 0 63 -4,-2.2 -2,-0.2 -5,-0.3 -1,-0.2 0.954 121.9 26.0 -55.8 -51.3 10.1 -12.9 -0.7 80 318 A W H < S+ 0 0 172 -4,-2.2 -2,-0.2 -5,-0.1 -1,-0.2 0.831 133.3 32.4 -82.4 -34.8 13.8 -11.9 -0.5 81 319 A D H < S+ 0 0 107 -4,-2.9 2,-0.2 -5,-0.3 -3,-0.2 0.552 107.6 63.0-109.4 -12.5 14.1 -10.6 3.0 82 320 A A < - 0 0 6 -4,-1.7 2,-0.4 -5,-0.3 6,-0.1 -0.665 63.7-143.6-110.1 169.1 11.6 -12.5 5.2 83 321 A L > - 0 0 105 4,-0.3 3,-1.9 -2,-0.2 -38,-0.5 -0.993 28.4-100.1-134.4 142.5 11.4 -16.2 6.1 84 322 A V T 3 S+ 0 0 54 -2,-0.4 -38,-0.2 1,-0.3 3,-0.1 -0.316 109.1 17.2 -57.8 138.2 8.4 -18.4 6.7 85 323 A D T 3 S+ 0 0 107 -40,-3.1 2,-0.3 1,-0.3 -1,-0.3 0.552 108.2 102.5 69.3 14.1 7.6 -18.9 10.4 86 324 A H S < S- 0 0 105 -3,-1.9 -41,-2.2 -41,-0.2 -1,-0.3 -0.867 81.1 -98.0-117.1 157.2 9.7 -15.9 11.3 87 325 A Y B -D 44 0A 119 -2,-0.3 -4,-0.3 -43,-0.2 -43,-0.3 -0.363 51.2 -93.2 -67.7 151.7 8.6 -12.5 12.2 88 326 A I - 0 0 5 -45,-2.5 -1,-0.1 1,-0.1 5,-0.1 -0.287 47.5 -95.6 -61.7 150.7 8.7 -9.9 9.5 89 327 A P > - 0 0 24 0, 0.0 3,-2.2 0, 0.0 4,-0.3 -0.365 31.2-116.1 -66.0 150.0 11.9 -7.8 9.1 90 328 A A G > S+ 0 0 69 1,-0.3 3,-1.7 2,-0.2 4,-0.4 0.835 112.5 64.4 -54.5 -39.8 11.9 -4.4 10.8 91 329 A E G 3 S+ 0 0 158 1,-0.3 -1,-0.3 2,-0.1 4,-0.2 0.657 105.9 45.4 -60.6 -20.5 12.2 -2.6 7.5 92 330 A Q G <> S+ 0 0 36 -3,-2.2 4,-2.2 1,-0.1 -1,-0.3 0.300 81.8 100.6-107.3 8.8 8.8 -4.0 6.5 93 331 A I H <> S+ 0 0 58 -3,-1.7 4,-2.6 -4,-0.3 5,-0.2 0.929 86.0 42.4 -58.8 -50.7 6.8 -3.2 9.7 94 332 A E H > S+ 0 0 152 -4,-0.4 4,-1.7 1,-0.2 -1,-0.2 0.916 114.7 50.4 -65.8 -41.6 5.1 -0.1 8.4 95 333 A A H > S+ 0 0 36 -4,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.895 114.4 45.4 -60.2 -40.7 4.3 -1.6 5.0 96 334 A T H X S+ 0 0 0 -4,-2.2 4,-1.0 1,-0.2 3,-0.3 0.885 106.0 59.1 -70.6 -39.1 2.9 -4.7 6.7 97 335 A A H >X S+ 0 0 42 -4,-2.6 4,-1.0 -5,-0.2 3,-0.6 0.893 101.0 57.7 -55.9 -37.4 0.9 -2.6 9.2 98 336 A E H >< S+ 0 0 53 -4,-1.7 3,-0.5 1,-0.2 -1,-0.2 0.903 105.7 47.5 -62.2 -40.5 -0.9 -1.0 6.3 99 337 A V H 3< S+ 0 0 12 -4,-1.0 -1,-0.2 -3,-0.3 -2,-0.2 0.657 115.0 48.0 -76.8 -11.9 -2.2 -4.3 4.9 100 338 A L H << 0 0 47 -4,-1.0 -1,-0.2 -3,-0.6 -2,-0.2 0.556 360.0 360.0 -98.9 -10.6 -3.3 -5.3 8.5 101 339 A R << 0 0 225 -4,-1.0 -1,-0.1 -3,-0.5 -2,-0.1 0.609 360.0 360.0 -44.9 360.0 -5.2 -2.1 9.3