==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 19-JUL-01 1JMT . COMPND 2 MOLECULE: SPLICING FACTOR U2AF 35 KDA SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.L.KIELKOPF,N.A.RODIONOVA,M.R.GREEN,S.K.BURLEY . 121 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7883.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 84 69.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 19.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 33.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 43 A S 0 0 44 0, 0.0 76,-0.2 0, 0.0 75,-0.1 0.000 360.0 360.0 360.0 150.8 -7.4 12.6 32.1 2 44 A Q + 0 0 70 97,-0.2 68,-3.0 96,-0.1 2,-0.4 0.424 360.0 86.0-103.2 -4.8 -5.6 10.6 29.4 3 45 A T E -A 69 0A 32 95,-0.3 95,-2.7 66,-0.3 2,-0.3 -0.844 54.9-173.4-105.9 135.0 -3.7 13.6 28.2 4 46 A I E -AB 68 97A 0 64,-2.2 64,-2.0 -2,-0.4 2,-0.4 -0.835 12.2-144.7-118.7 157.9 -0.4 14.9 29.6 5 47 A A E -AB 67 96A 2 91,-2.6 91,-1.2 -2,-0.3 2,-0.8 -0.992 4.2-156.5-127.9 131.8 1.5 18.1 28.8 6 48 A L E > -AB 66 95A 0 60,-2.8 60,-1.9 -2,-0.4 3,-0.9 -0.929 32.2-132.2-106.6 106.1 5.3 18.5 28.6 7 49 A L E 3 - 0 0 59 87,-2.5 87,-0.3 -2,-0.8 58,-0.1 -0.452 67.6 -25.9 -72.2 124.3 5.7 22.3 29.2 8 50 A N E 3 S+ 0 0 65 -2,-0.3 -1,-0.2 1,-0.1 57,-0.2 0.771 88.7 139.4 47.2 34.8 7.9 24.3 26.9 9 51 A I E < + 0 0 18 -3,-0.9 2,-0.9 55,-0.3 56,-0.2 0.818 48.6 78.2 -76.2 -28.9 10.0 21.2 26.2 10 52 A Y E +A 64 0A 14 54,-2.4 54,-1.7 -4,-0.3 2,-0.3 -0.710 65.4 177.5 -87.4 104.7 10.4 22.0 22.5 11 53 A R E +A 63 0A 102 -2,-0.9 52,-0.2 52,-0.2 51,-0.1 -0.726 17.6 163.7-105.9 155.7 13.1 24.6 22.1 12 54 A N + 0 0 41 50,-1.4 51,-0.1 -2,-0.3 -2,-0.0 -0.215 5.3 169.4-170.2 67.8 14.5 26.2 19.0 13 55 A P 0 0 101 0, 0.0 50,-0.0 0, 0.0 -1,-0.0 0.961 360.0 360.0 -49.0 -85.1 16.6 29.4 19.4 14 56 A Q 0 0 234 48,-0.0 48,-0.0 0, 0.0 -2,-0.0 0.632 360.0 360.0-119.0 360.0 18.5 30.5 16.2 15 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 16 63 A D >> 0 0 148 0, 0.0 3,-3.2 0, 0.0 4,-1.8 0.000 360.0 360.0 360.0 -99.6 17.2 35.0 1.2 17 64 A G H 3> + 0 0 53 1,-0.3 4,-1.5 2,-0.2 5,-0.1 0.702 360.0 43.5 -21.9 -49.7 14.6 33.1 -0.8 18 65 A L H 3> S+ 0 0 139 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.838 111.5 55.5 -71.4 -34.7 16.9 30.1 -1.0 19 66 A R H <> S+ 0 0 196 -3,-3.2 4,-2.3 1,-0.2 -2,-0.2 0.883 105.2 53.2 -64.6 -37.5 17.7 30.7 2.7 20 67 A S H X S+ 0 0 60 -4,-1.8 4,-2.5 2,-0.2 -2,-0.2 0.924 109.5 47.1 -63.8 -45.4 14.0 30.5 3.6 21 68 A A H X S+ 0 0 50 -4,-1.5 4,-2.2 -5,-0.3 -1,-0.2 0.903 113.3 47.9 -63.0 -43.8 13.5 27.2 1.8 22 69 A V H X S+ 0 0 64 -4,-2.1 4,-2.5 1,-0.2 -1,-0.2 0.905 112.2 50.6 -63.8 -41.4 16.6 25.7 3.5 23 70 A S H X S+ 0 0 51 -4,-2.3 4,-2.3 2,-0.2 5,-0.2 0.893 108.4 52.0 -63.8 -41.4 15.4 27.0 6.8 24 71 A D H X S+ 0 0 97 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.941 111.5 47.1 -60.8 -47.1 11.9 25.5 6.3 25 72 A V H X S+ 0 0 74 -4,-2.2 4,-2.6 1,-0.2 5,-0.2 0.932 112.9 47.0 -60.8 -49.3 13.4 22.1 5.5 26 73 A E H X S+ 0 0 122 -4,-2.5 4,-2.3 2,-0.2 -1,-0.2 0.895 112.7 49.6 -63.0 -39.9 15.8 22.0 8.5 27 74 A M H X S+ 0 0 57 -4,-2.3 4,-2.6 2,-0.2 -1,-0.2 0.944 112.2 48.7 -62.9 -46.8 13.1 23.1 10.9 28 75 A Q H X S+ 0 0 106 -4,-2.4 4,-2.5 -5,-0.2 -2,-0.2 0.892 113.6 45.8 -59.2 -43.7 10.8 20.4 9.6 29 76 A E H X S+ 0 0 126 -4,-2.6 4,-2.0 2,-0.2 -1,-0.2 0.844 113.6 49.1 -69.1 -35.1 13.4 17.7 9.9 30 77 A H H X S+ 0 0 50 -4,-2.3 4,-2.0 -5,-0.2 -2,-0.2 0.860 112.1 50.3 -71.5 -34.5 14.4 18.9 13.3 31 78 A Y H X S+ 0 0 58 -4,-2.6 4,-2.7 -5,-0.2 -2,-0.2 0.927 111.9 45.9 -67.8 -47.1 10.7 18.9 14.2 32 79 A D H X S+ 0 0 80 -4,-2.5 4,-2.4 2,-0.2 5,-0.2 0.866 111.9 51.6 -65.5 -37.3 10.2 15.3 12.9 33 80 A E H X S+ 0 0 74 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.925 112.5 46.4 -64.2 -44.2 13.4 14.1 14.7 34 81 A F H X S+ 0 0 5 -4,-2.0 4,-2.4 2,-0.2 5,-0.2 0.937 111.7 51.5 -61.6 -48.6 12.1 15.6 17.9 35 82 A F H X S+ 0 0 55 -4,-2.7 4,-3.6 2,-0.2 5,-0.2 0.938 111.9 44.6 -54.0 -55.9 8.7 14.1 17.5 36 83 A E H X S+ 0 0 102 -4,-2.4 4,-2.7 1,-0.2 5,-0.3 0.911 111.0 56.9 -56.7 -43.3 9.9 10.6 16.9 37 84 A E H X S+ 0 0 42 -4,-2.2 4,-1.2 -5,-0.2 -1,-0.2 0.917 116.2 33.7 -54.8 -48.0 12.3 11.1 19.8 38 85 A V H X S+ 0 0 0 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.932 117.5 52.5 -76.6 -47.8 9.5 11.8 22.2 39 86 A F H X S+ 0 0 67 -4,-3.6 4,-2.3 -5,-0.2 5,-0.3 0.941 108.5 50.6 -52.7 -54.0 6.8 9.6 20.7 40 87 A T H X S+ 0 0 61 -4,-2.7 4,-2.9 -5,-0.2 -1,-0.2 0.905 111.6 47.6 -53.2 -47.3 9.1 6.5 20.8 41 88 A E H X>S+ 0 0 27 -4,-1.2 4,-2.7 -5,-0.3 5,-0.7 0.911 108.7 55.4 -62.8 -41.0 9.9 7.0 24.4 42 89 A M H X>S+ 0 0 0 -4,-2.6 5,-1.6 1,-0.2 4,-1.4 0.919 116.2 36.8 -57.8 -44.6 6.2 7.6 25.3 43 90 A E H <5S+ 0 0 81 -4,-2.3 -1,-0.2 3,-0.2 -2,-0.2 0.852 116.5 53.4 -76.6 -35.9 5.3 4.2 23.8 44 91 A E H <5S+ 0 0 135 -4,-2.9 -2,-0.2 -5,-0.3 -3,-0.2 0.932 127.6 13.2 -66.6 -46.8 8.5 2.4 24.9 45 92 A K H <5S+ 0 0 125 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.741 133.7 31.3-106.8 -23.6 8.2 3.3 28.6 46 93 A Y T < - 0 0 106 -24,-0.4 4,-1.8 1,-0.1 3,-0.3 -0.912 69.7-150.1-113.6 126.7 -5.1 4.6 29.1 73 120 A E H > S+ 0 0 102 -2,-0.5 4,-2.1 1,-0.2 5,-0.2 0.850 101.7 59.1 -55.8 -34.6 -5.7 7.1 31.8 74 121 A E H > S+ 0 0 123 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.924 102.9 49.2 -61.2 -48.9 -3.5 5.0 34.0 75 122 A D H > S+ 0 0 37 -3,-0.3 4,-2.4 1,-0.2 -1,-0.2 0.899 110.0 53.3 -58.6 -42.0 -0.5 5.3 31.8 76 123 A A H X S+ 0 0 0 -4,-1.8 4,-2.3 1,-0.2 -1,-0.2 0.937 108.3 47.8 -59.1 -50.9 -0.9 9.0 31.6 77 124 A E H X S+ 0 0 92 -4,-2.1 4,-1.3 1,-0.2 -1,-0.2 0.850 115.5 45.5 -61.4 -35.8 -1.0 9.5 35.4 78 125 A K H X S+ 0 0 143 -4,-1.9 4,-2.3 2,-0.2 5,-0.2 0.827 108.7 56.0 -77.0 -32.1 2.1 7.3 35.8 79 126 A A H X S+ 0 0 0 -4,-2.4 4,-3.5 -5,-0.2 5,-0.3 0.940 105.0 53.1 -64.0 -46.0 3.9 9.1 32.9 80 127 A V H X S+ 0 0 18 -4,-2.3 4,-1.8 1,-0.2 15,-0.2 0.925 110.5 46.6 -54.4 -49.6 3.5 12.4 34.6 81 128 A I H < S+ 0 0 112 -4,-1.3 4,-0.3 2,-0.2 -1,-0.2 0.946 118.2 40.2 -60.2 -51.9 5.0 11.2 37.9 82 129 A D H >< S+ 0 0 68 -4,-2.3 3,-1.8 1,-0.2 -2,-0.2 0.918 113.3 54.3 -65.8 -42.8 8.0 9.5 36.3 83 130 A L H >< S+ 0 0 0 -4,-3.5 3,-1.7 1,-0.3 10,-0.4 0.819 100.0 60.7 -61.7 -31.9 8.6 12.3 33.7 84 131 A N T 3< S+ 0 0 24 -4,-1.8 -1,-0.3 -5,-0.3 -2,-0.2 0.601 102.5 54.6 -72.2 -7.9 8.7 14.9 36.5 85 132 A N T < S+ 0 0 80 -3,-1.8 2,-0.3 -4,-0.3 -1,-0.3 0.079 101.1 81.5-106.9 19.0 11.7 12.9 37.8 86 133 A R < - 0 0 18 -3,-1.7 7,-2.4 7,-0.1 2,-0.2 -0.880 67.1-132.4-128.6 160.3 13.6 13.1 34.5 87 134 A W E -D 92 0B 21 -2,-0.3 17,-2.3 5,-0.2 2,-0.3 -0.639 15.3-169.3-100.5 162.8 15.8 15.4 32.5 88 135 A F E > -DE 91 103B 8 3,-2.6 3,-1.4 17,-0.4 15,-0.2 -0.879 69.7 -21.2-154.9 116.5 15.5 16.2 28.8 89 136 A N T 3 S- 0 0 80 13,-3.5 14,-0.1 -2,-0.3 13,-0.1 0.844 127.3 -46.0 52.6 43.4 18.1 18.1 26.8 90 137 A G T 3 S+ 0 0 11 15,-3.3 -1,-0.3 12,-0.4 13,-0.1 0.600 123.7 89.9 79.6 9.2 19.8 19.7 29.8 91 138 A Q E < S-D 88 0B 86 -3,-1.4 -3,-2.6 14,-0.4 -1,-0.2 -0.963 80.6-109.2-135.5 151.7 16.6 20.8 31.5 92 139 A P E -D 87 0B 6 0, 0.0 2,-0.3 0, 0.0 -5,-0.2 -0.524 41.4-112.6 -76.3 152.1 14.3 19.1 34.0 93 140 A I - 0 0 5 -7,-2.4 2,-0.6 -10,-0.4 -7,-0.1 -0.627 18.4-152.7 -84.6 146.6 10.9 18.1 32.5 94 141 A H + 0 0 74 -87,-0.3 -87,-2.5 -2,-0.3 2,-0.3 -0.885 24.6 179.3-119.1 92.7 7.8 19.8 33.6 95 142 A A E +B 6 0A 10 -2,-0.6 2,-0.3 -15,-0.2 -89,-0.2 -0.673 4.7 169.4 -96.8 153.5 5.0 17.3 33.2 96 143 A E E -B 5 0A 102 -91,-1.2 -91,-2.6 -2,-0.3 2,-0.2 -0.943 39.3-111.0-165.5 134.9 1.3 17.8 34.0 97 144 A L E -B 4 0A 61 -2,-0.3 -93,-0.3 -93,-0.2 -95,-0.0 -0.532 35.6-149.4 -65.6 132.1 -2.0 16.1 33.4 98 145 A S 0 0 16 -95,-2.7 -95,-0.3 -2,-0.2 -96,-0.1 -0.880 360.0 360.0-113.5 103.3 -3.9 18.4 31.0 99 146 A P 0 0 181 0, 0.0 -97,-0.2 0, 0.0 -1,-0.2 0.843 360.0 360.0 -39.4 360.0 -7.7 18.2 31.5 100 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 101 90 B K 0 0 152 0, 0.0 -13,-0.0 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -28.1 20.3 12.6 22.2 102 91 B Y > + 0 0 20 -13,-0.1 -13,-3.5 -14,-0.1 3,-1.5 0.652 360.0 98.9-125.8 -48.8 17.8 14.4 24.4 103 92 B W B 3 S-E 88 0B 29 1,-0.2 -15,-0.2 -15,-0.2 -65,-0.0 -0.188 98.8 -4.6 -55.0 131.3 16.4 12.0 27.0 104 93 B D T 3 S+ 0 0 79 -17,-2.3 -1,-0.2 1,-0.2 -16,-0.2 0.669 83.8 147.0 59.7 24.0 17.9 12.1 30.5 105 94 B V < - 0 0 62 -3,-1.5 -15,-3.3 -14,-0.1 -14,-0.4 -0.794 37.6-150.4 -91.5 105.9 20.6 14.7 29.6 106 95 B P - 0 0 37 0, 0.0 5,-0.1 0, 0.0 3,-0.1 -0.227 28.2 -86.8 -72.0 160.1 21.0 16.8 32.9 107 96 B P > - 0 0 5 0, 0.0 3,-2.4 0, 0.0 4,-0.1 -0.440 67.6 -80.8 -64.5 144.4 22.0 20.4 32.9 108 97 B P T 3 S+ 0 0 124 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 -0.239 117.5 12.1 -50.0 124.4 25.9 20.5 32.9 109 98 B G T 3 S+ 0 0 66 -3,-0.1 3,-0.2 1,-0.0 0, 0.0 0.399 106.8 88.2 90.1 -2.0 27.1 19.9 36.5 110 99 B F X + 0 0 77 -3,-2.4 3,-1.4 1,-0.1 8,-0.1 0.096 42.6 112.3-117.5 25.0 23.8 18.7 38.0 111 100 B E T 3 S+ 0 0 131 1,-0.2 -1,-0.1 -5,-0.1 0, 0.0 0.721 74.1 63.4 -67.8 -17.5 23.9 15.0 37.3 112 101 B H T 3 S+ 0 0 166 -3,-0.2 2,-0.3 2,-0.1 -1,-0.2 0.395 99.0 54.5 -91.5 4.8 24.2 14.4 41.1 113 102 B I S < S- 0 0 55 -3,-1.4 -3,-0.0 3,-0.0 0, 0.0 -0.866 89.2-102.1-127.5 165.6 20.9 15.9 42.1 114 103 B T > - 0 0 64 -2,-0.3 4,-2.0 1,-0.1 3,-0.3 -0.475 25.8-114.3 -88.7 159.2 17.3 15.0 41.0 115 104 B P H > S+ 0 0 8 0, 0.0 4,-3.0 0, 0.0 5,-0.2 0.889 118.4 54.6 -57.7 -36.7 15.2 17.0 38.5 116 105 B M H > S+ 0 0 87 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.881 107.6 48.3 -65.1 -37.5 12.7 17.7 41.3 117 106 B Q H > S+ 0 0 109 -3,-0.3 4,-0.6 2,-0.2 -1,-0.2 0.830 113.3 49.2 -71.2 -30.3 15.5 19.2 43.5 118 107 B Y H >< S+ 0 0 44 -4,-2.0 3,-1.3 1,-0.2 4,-0.5 0.953 111.3 47.8 -72.2 -49.0 16.6 21.3 40.6 119 108 B K H >< S+ 0 0 23 -4,-3.0 3,-1.5 1,-0.3 -2,-0.2 0.847 100.4 67.7 -59.9 -33.6 13.1 22.5 39.8 120 109 B A H 3< S+ 0 0 84 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.800 100.8 49.4 -58.0 -28.4 12.6 23.3 43.5 121 110 B M T << S+ 0 0 128 -3,-1.3 -1,-0.3 -4,-0.6 2,-0.2 0.588 87.9 104.2 -87.5 -11.3 15.2 26.1 43.1 122 111 B Q < 0 0 83 -3,-1.5 -3,-0.0 -4,-0.5 -4,-0.0 -0.519 360.0 360.0 -74.2 138.0 13.6 27.6 40.0 123 112 B A 0 0 168 -2,-0.2 -2,-0.0 0, 0.0 -3,-0.0 -0.821 360.0 360.0-153.9 360.0 11.7 30.8 40.6