==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 02-NOV-06 2JMD . COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.MERCIER,M.J.LEWIS,D.D.HAU,L.F.SALTIBUS,W.XIAO, . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4739.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 49.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 17.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 120 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-121.7 6.8 -30.5 -11.9 2 2 A P - 0 0 136 0, 0.0 2,-0.6 0, 0.0 0, 0.0 -0.295 360.0-128.2 -60.4 143.8 9.1 -29.2 -9.1 3 3 A L S S+ 0 0 179 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.848 71.6 79.5-101.5 123.9 8.0 -25.9 -7.6 4 4 A G - 0 0 35 -2,-0.6 2,-0.2 2,-0.0 -1,-0.1 0.292 60.2-149.1 139.8 81.7 10.7 -23.1 -7.5 5 5 A S - 0 0 84 3,-0.1 2,-0.4 1,-0.0 3,-0.1 -0.464 8.8-168.9 -76.3 141.4 11.5 -21.1 -10.6 6 6 A K S S- 0 0 161 -2,-0.2 -1,-0.0 1,-0.2 -2,-0.0 -0.891 78.4 -27.3-131.3 102.3 14.9 -19.8 -11.2 7 7 A Y S S+ 0 0 169 -2,-0.4 9,-0.8 1,-0.2 2,-0.3 0.993 99.0 155.1 48.7 76.7 14.9 -17.3 -14.2 8 8 A E E -A 15 0A 63 7,-0.2 7,-0.2 19,-0.1 -1,-0.2 -0.948 51.6-116.2-134.5 149.7 12.0 -18.9 -15.8 9 9 A C E >>> -A 14 0A 0 5,-2.3 4,-2.2 -2,-0.3 5,-0.9 -0.796 19.8-163.2 -88.7 110.1 9.3 -17.7 -18.2 10 10 A P T 345S+ 0 0 57 0, 0.0 -1,-0.2 0, 0.0 18,-0.1 0.686 84.5 70.4 -66.5 -17.9 5.9 -18.0 -16.4 11 11 A I T 345S+ 0 0 58 1,-0.2 17,-0.0 3,-0.1 -2,-0.0 0.913 122.6 7.9 -65.8 -44.0 4.2 -17.8 -19.7 12 12 A C T <45S- 0 0 38 -3,-0.7 -1,-0.2 2,-0.2 3,-0.1 0.481 94.3-126.5-115.0 -8.2 5.3 -21.3 -20.8 13 13 A L T <5S+ 0 0 121 -4,-2.2 2,-0.3 1,-0.3 3,-0.0 0.805 72.2 122.5 56.7 34.8 6.9 -22.5 -17.6 14 14 A M E - 0 0 3 4,-2.7 3,-1.9 -2,-0.4 34,-0.1 -0.566 28.3-111.8 -87.9 160.7 12.0 -6.0 -20.1 23 23 A P T 3 S+ 0 0 85 0, 0.0 -1,-0.1 0, 0.0 28,-0.1 0.679 120.1 69.0 -62.9 -18.0 12.5 -2.5 -18.7 24 24 A C T 3 S- 0 0 46 2,-0.2 3,-0.1 25,-0.1 27,-0.0 0.685 119.3-114.7 -69.8 -21.4 10.5 -3.9 -15.8 25 25 A G S < S+ 0 0 37 -3,-1.9 2,-0.4 1,-0.4 -4,-0.0 0.443 76.7 125.3 97.9 2.1 13.6 -6.0 -15.1 26 26 A H - 0 0 71 -19,-0.0 -4,-2.7 -6,-0.0 2,-0.4 -0.785 50.8-144.5 -97.5 136.4 11.8 -9.3 -15.9 27 27 A R E +B 21 0B 65 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.850 24.0 170.3-102.5 135.3 13.3 -11.7 -18.4 28 28 A F E -B 20 0B 2 -8,-2.2 -8,-3.4 -2,-0.4 2,-0.1 -0.848 42.3 -78.7-134.0 166.6 11.1 -13.7 -20.7 29 29 A C > - 0 0 2 -2,-0.3 4,-1.7 -10,-0.2 5,-0.4 -0.436 44.4-115.6 -65.7 150.1 11.5 -15.9 -23.7 30 30 A K T 4 S+ 0 0 104 -13,-2.7 -1,-0.1 1,-0.2 -12,-0.1 0.577 112.2 29.7 -67.1 -10.6 11.9 -14.0 -27.0 31 31 A A T > S+ 0 0 67 -14,-0.2 4,-2.7 3,-0.1 -1,-0.2 0.733 111.6 60.2-116.1 -38.1 8.6 -15.4 -28.3 32 32 A C T 4 S+ 0 0 23 1,-0.2 4,-0.3 2,-0.2 -2,-0.2 0.903 108.1 45.3 -61.8 -45.1 6.5 -16.1 -25.3 33 33 A I T >X S+ 0 0 0 -4,-1.7 4,-1.4 1,-0.2 3,-0.9 0.910 113.3 50.8 -66.9 -39.3 6.4 -12.4 -24.2 34 34 A I H 3> S+ 0 0 45 -5,-0.4 4,-2.3 1,-0.3 3,-0.4 0.926 109.5 50.1 -63.0 -42.9 5.8 -11.2 -27.7 35 35 A K H 3< S+ 0 0 136 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.494 113.2 48.5 -78.6 -1.5 2.9 -13.6 -28.1 36 36 A S H <>>S+ 0 0 32 -3,-0.9 5,-1.5 -4,-0.3 4,-0.7 0.654 115.1 41.5-105.8 -19.7 1.5 -12.4 -24.8 37 37 A I H <5S+ 0 0 1 -4,-1.4 -2,-0.2 -3,-0.4 -3,-0.2 0.741 118.8 40.0-103.0 -26.2 1.8 -8.6 -25.5 38 38 A R T <5S+ 0 0 179 -4,-2.3 -1,-0.1 -5,-0.2 -3,-0.1 0.306 123.4 42.5-103.0 8.6 0.6 -8.4 -29.1 39 39 A D T 45S+ 0 0 115 2,-0.2 -2,-0.2 -5,-0.2 -3,-0.1 0.726 132.5 9.9-115.3 -53.8 -2.1 -10.9 -28.6 40 40 A A T <5S- 0 0 90 -4,-0.7 2,-0.3 1,-0.3 -3,-0.2 0.900 123.8 -51.9 -91.9 -66.7 -3.7 -10.1 -25.2 41 41 A G < - 0 0 24 -5,-1.5 2,-1.9 2,-0.2 -1,-0.3 -0.964 56.0 -85.0-169.8 161.7 -2.3 -6.8 -24.3 42 42 A H S S+ 0 0 70 -2,-0.3 9,-0.7 -4,-0.1 2,-0.3 -0.521 84.5 103.0 -80.9 81.1 1.0 -5.0 -23.9 43 43 A K B S-D 50 0C 89 -2,-1.9 7,-0.2 7,-0.3 -2,-0.2 -0.985 75.7-107.7-151.3 154.8 1.9 -6.0 -20.3 44 44 A C > - 0 0 0 5,-2.1 4,-2.7 -2,-0.3 3,-0.4 -0.810 32.6-138.5 -83.4 125.7 4.2 -8.4 -18.5 45 45 A P T 4 S+ 0 0 60 0, 0.0 -1,-0.1 0, 0.0 -12,-0.0 0.754 94.1 60.8 -60.9 -27.3 1.8 -11.1 -17.1 46 46 A V T 4 S- 0 0 88 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 0.950 130.5 -1.0 -66.1 -49.5 3.5 -11.3 -13.7 47 47 A D T 4 S- 0 0 59 -3,-0.4 -1,-0.1 2,-0.1 0, 0.0 0.288 93.9-117.0-131.9 6.4 3.0 -7.7 -12.5 48 48 A N < + 0 0 83 -4,-2.7 2,-0.3 1,-0.2 -6,-0.0 0.808 52.1 160.3 59.8 37.9 1.1 -6.0 -15.4 49 49 A E - 0 0 109 -5,-0.4 -5,-2.1 1,-0.1 2,-0.3 -0.664 52.5 -95.9 -83.5 147.0 3.7 -3.4 -16.4 50 50 A I B -D 43 0C 119 -2,-0.3 2,-0.5 -7,-0.2 -7,-0.3 -0.470 48.5-173.0 -66.8 121.3 3.3 -2.0 -19.9 51 51 A L - 0 0 3 -9,-0.7 2,-0.3 -2,-0.3 -29,-0.0 -0.974 8.0-169.6-125.6 127.1 5.6 -3.9 -22.2 52 52 A L >> - 0 0 59 -2,-0.5 3,-0.9 1,-0.1 4,-0.5 -0.829 30.9-122.8-112.4 151.9 6.4 -3.1 -25.8 53 53 A E G >4 S+ 0 0 70 -2,-0.3 3,-1.0 1,-0.3 -1,-0.1 0.872 114.2 51.0 -60.1 -39.4 8.2 -5.3 -28.4 54 54 A N G 34 S+ 0 0 121 1,-0.3 -1,-0.3 3,-0.0 -3,-0.0 0.664 102.5 61.8 -75.4 -15.2 10.8 -2.5 -29.0 55 55 A Q G <4 S+ 0 0 80 -3,-0.9 2,-0.3 2,-0.0 -1,-0.3 0.596 84.8 98.5 -83.1 -14.9 11.4 -2.2 -25.3 56 56 A L << - 0 0 18 -3,-1.0 -34,-0.2 -4,-0.5 -29,-0.0 -0.592 52.7-175.0 -76.1 133.8 12.6 -5.8 -25.2 57 57 A F E -C 21 0B 136 -36,-2.0 -36,-2.8 -2,-0.3 3,-0.1 -0.995 28.3-117.3-131.0 124.9 16.3 -6.3 -25.2 58 58 A P E -C 20 0B 80 0, 0.0 -38,-0.3 0, 0.0 2,-0.2 -0.360 38.6-111.2 -58.6 136.5 18.0 -9.7 -25.4 59 59 A D - 0 0 32 -40,-3.8 2,-1.0 -41,-0.5 3,-0.0 -0.476 20.4-128.7 -74.7 136.7 20.0 -10.4 -22.3 60 60 A N + 0 0 102 -2,-0.2 3,-0.5 1,-0.2 -1,-0.1 -0.778 34.3 167.3 -90.2 104.1 23.7 -10.5 -22.7 61 61 A F + 0 0 151 -2,-1.0 -1,-0.2 1,-0.2 -2,-0.0 0.269 58.8 89.5 -97.5 8.6 24.8 -13.7 -21.1 62 62 A A 0 0 81 1,-0.0 -1,-0.2 -3,-0.0 -2,-0.1 0.375 360.0 360.0 -86.4 2.6 28.3 -13.4 -22.6 63 63 A K 0 0 217 -3,-0.5 -1,-0.0 0, 0.0 -3,-0.0 -0.781 360.0 360.0 -90.6 360.0 29.5 -11.4 -19.6