==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 15-NOV-06 2JMI . COMPND 2 MOLECULE: PROTEIN YNG1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR S.ILIN,S.D.TAVERNA,R.S.ROGERS,J.C.TANNY,H.LAVENDER,H.LI, . 60 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4644.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 5.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 24 A Q 0 0 189 0, 0.0 2,-0.3 0, 0.0 10,-0.1 0.000 360.0 360.0 360.0 162.3 -12.8 9.3 1.4 2 25 A E + 0 0 166 9,-0.1 2,-0.1 2,-0.0 11,-0.0 -0.755 360.0 90.4-139.5 90.1 -13.4 9.6 -2.4 3 26 A E S S- 0 0 136 -2,-0.3 2,-0.2 9,-0.0 8,-0.2 -0.207 75.1 -82.5-142.1-125.5 -10.3 10.2 -4.5 4 27 A V + 0 0 60 -2,-0.1 7,-0.3 6,-0.1 -2,-0.0 -0.758 46.9 153.7-164.4 108.3 -7.7 7.9 -6.3 5 28 A Y + 0 0 49 5,-1.9 4,-0.2 -2,-0.2 6,-0.2 0.774 50.2 56.7-103.1 -88.9 -4.7 6.4 -4.6 6 29 A a S >> S- 0 0 3 1,-0.2 3,-1.1 2,-0.1 4,-0.6 0.012 92.8-101.5 -46.9 156.0 -3.1 3.2 -5.9 7 30 A F T 34 S+ 0 0 130 1,-0.3 -1,-0.2 2,-0.1 22,-0.1 0.178 109.2 90.6 -68.9 22.6 -1.9 3.1 -9.5 8 31 A a T 34 S- 0 0 42 2,-0.2 -1,-0.3 -2,-0.1 3,-0.1 0.278 105.3-114.7-100.7 9.3 -5.1 1.2 -10.2 9 32 A R T <4 S+ 0 0 199 -3,-1.1 2,-0.2 1,-0.3 -2,-0.1 0.682 86.1 90.2 65.1 23.2 -6.9 4.5 -10.9 10 33 A N < - 0 0 56 -4,-0.6 -5,-1.9 20,-0.0 -1,-0.3 -0.720 63.2-132.1-134.3-176.9 -9.2 4.0 -7.9 11 34 A V - 0 0 19 -7,-0.3 2,-1.0 -2,-0.2 3,-0.1 -0.525 48.1 -41.9-126.6-165.8 -9.2 4.9 -4.2 12 35 A S + 0 0 33 1,-0.2 4,-0.1 -2,-0.2 -1,-0.0 -0.482 48.0 168.6 -64.8 97.5 -9.7 3.5 -0.7 13 36 A Y S S- 0 0 121 -2,-1.0 -1,-0.2 2,-0.2 3,-0.1 0.894 72.3 -62.9 -77.0 -38.6 -12.9 1.3 -1.0 14 37 A G S S+ 0 0 43 1,-0.3 2,-0.4 -3,-0.1 -2,-0.1 -0.158 117.6 60.5-167.3 -87.5 -12.2 -0.1 2.5 15 38 A P S S+ 0 0 75 0, 0.0 16,-1.3 0, 0.0 -1,-0.3 -0.480 71.4 160.7 -65.4 114.0 -9.1 -2.1 3.4 16 39 A M E -A 30 0A 28 -2,-0.4 2,-0.3 14,-0.2 14,-0.2 -0.789 24.1-175.0-132.6 176.7 -6.1 0.2 2.7 17 40 A V E -A 29 0A 13 12,-1.4 12,-2.7 -2,-0.2 2,-0.3 -0.933 21.7-125.0-170.0 147.7 -2.4 0.8 3.5 18 41 A A - 0 0 27 -2,-0.3 2,-1.4 10,-0.2 26,-0.3 -0.748 45.1 -89.9-101.2 148.8 0.2 3.4 2.8 19 42 A b - 0 0 2 -2,-0.3 2,-2.8 26,-0.2 26,-0.2 -0.344 39.8-162.6 -57.2 90.1 3.6 2.7 1.2 20 43 A D + 0 0 58 24,-1.5 -1,-0.2 -2,-1.4 25,-0.1 -0.154 58.4 101.0 -72.0 46.9 5.5 1.9 4.5 21 44 A N S S- 0 0 6 -2,-2.8 30,-0.1 2,-0.1 -2,-0.0 -0.998 79.6-127.7-136.3 137.9 8.7 2.4 2.5 22 45 A P S S+ 0 0 107 0, 0.0 -1,-0.1 0, 0.0 32,-0.1 0.875 108.7 34.4 -49.2 -43.2 11.1 5.5 2.4 23 46 A A S S+ 0 0 37 27,-0.2 -2,-0.1 28,-0.1 27,-0.1 0.856 73.9 130.8 -76.9 -98.1 10.9 5.5 -1.4 24 47 A c - 0 0 7 1,-0.1 -3,-0.1 25,-0.1 -5,-0.1 0.893 60.4-129.9 44.4 102.2 7.4 4.4 -2.6 25 48 A P S S+ 0 0 99 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.717 90.6 23.7 -52.0 -21.8 6.2 7.0 -5.2 26 49 A F - 0 0 103 0, 0.0 20,-0.1 0, 0.0 3,-0.1 -0.788 64.9-142.3-136.1 178.4 3.0 7.2 -3.3 27 50 A E S S+ 0 0 124 -2,-0.2 2,-0.3 1,-0.2 -21,-0.1 -0.088 79.3 65.6-137.5 35.6 1.7 6.6 0.3 28 51 A W + 0 0 122 -10,-0.2 2,-0.3 -23,-0.1 -10,-0.2 -0.836 52.2 159.4-161.0 117.1 -1.8 5.2 -0.4 29 52 A F E -A 17 0A 2 -12,-2.7 -12,-1.4 -2,-0.3 2,-0.2 -0.998 28.6-130.9-143.7 144.9 -2.7 1.8 -2.0 30 53 A H E > -A 16 0A 0 -2,-0.3 4,-2.4 -14,-0.2 -14,-0.2 -0.532 19.5-126.1 -92.5 160.5 -5.8 -0.4 -2.0 31 54 A Y T 4 S+ 0 0 24 -16,-1.3 5,-0.4 2,-0.2 -1,-0.1 0.814 116.0 52.6 -74.5 -28.3 -5.8 -4.1 -1.4 32 55 A G T 4 S+ 0 0 62 -17,-0.3 -1,-0.2 1,-0.2 -3,-0.0 0.782 110.3 51.0 -74.1 -26.2 -7.7 -4.6 -4.7 33 56 A C T 4 S+ 0 0 33 -22,-0.1 -2,-0.2 2,-0.0 -1,-0.2 0.935 126.5 13.6 -73.0 -51.4 -4.9 -2.5 -6.2 34 57 A V S < S- 0 0 27 -4,-2.4 2,-0.3 13,-0.1 13,-0.1 0.206 96.0 -85.4-100.1-140.0 -2.1 -4.7 -4.8 35 58 A G S S+ 0 0 35 2,-0.0 2,-0.3 -5,-0.0 -3,-0.1 -0.867 73.4 71.6-145.0 107.7 -2.1 -8.1 -3.1 36 59 A L - 0 0 26 -5,-0.4 2,-0.3 -2,-0.3 -2,-0.0 -0.973 58.5-113.7 172.1-177.7 -2.8 -8.7 0.6 37 60 A K S S- 0 0 182 -2,-0.3 -21,-0.0 -21,-0.0 -2,-0.0 -0.949 88.4 -15.1-148.6 122.8 -5.4 -8.7 3.4 38 61 A Q S S- 0 0 159 -2,-0.3 4,-0.3 1,-0.2 -22,-0.0 0.716 117.4 -75.1 57.3 20.9 -5.6 -6.4 6.4 39 62 A A > - 0 0 6 2,-0.1 3,-1.4 -24,-0.0 -1,-0.2 0.975 61.6-111.1 55.4 86.4 -2.0 -5.4 5.5 40 63 A P T 3 S+ 0 0 58 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 -0.054 99.6 12.8 -44.8 142.2 0.1 -8.4 6.7 41 64 A K T 3 S- 0 0 201 1,-0.2 2,-2.6 3,-0.0 -2,-0.1 0.729 121.3 -87.7 58.7 22.1 2.4 -7.8 9.7 42 65 A G S < S+ 0 0 58 -3,-1.4 2,-0.5 -4,-0.3 -1,-0.2 -0.295 118.5 72.8 76.6 -56.7 0.4 -4.6 10.2 43 66 A K - 0 0 153 -2,-2.6 2,-0.3 -26,-0.1 -24,-0.1 -0.799 65.1-175.0 -95.3 129.0 2.7 -2.7 7.8 44 67 A W - 0 0 42 -2,-0.5 -24,-1.5 -26,-0.3 2,-0.7 -0.890 27.5-116.5-121.2 152.1 2.4 -3.4 4.1 45 68 A Y - 0 0 87 -2,-0.3 6,-0.3 -26,-0.2 -26,-0.2 -0.802 28.2-121.6 -93.5 118.0 4.5 -2.2 1.2 46 69 A b S S- 0 0 0 -2,-0.7 2,-0.3 4,-0.3 -1,-0.1 0.658 90.3 -5.6 -23.6 -37.9 2.5 -0.1 -1.3 47 70 A S S > S- 0 0 34 -13,-0.1 4,-1.4 -41,-0.0 5,-0.2 -0.981 81.8 -90.9-158.6 163.9 3.5 -2.6 -4.0 48 71 A K H > S+ 0 0 147 -2,-0.3 4,-0.9 1,-0.2 -2,-0.1 0.767 136.2 38.6 -50.8 -21.7 5.6 -5.6 -4.7 49 72 A D H > S+ 0 0 94 2,-0.2 4,-4.3 3,-0.1 5,-0.5 0.863 99.9 69.6 -93.5 -47.0 8.1 -2.9 -5.6 50 73 A c H 4 S+ 0 0 3 1,-0.3 4,-0.3 2,-0.2 -4,-0.3 0.718 109.3 43.8 -44.4 -18.7 7.3 -0.4 -2.9 51 74 A K H X S+ 0 0 122 -4,-1.4 4,-1.3 -6,-0.3 3,-0.4 0.886 115.2 43.5 -91.3 -52.3 8.9 -3.1 -0.8 52 75 A E H X S+ 0 0 120 -4,-0.9 4,-2.1 -5,-0.2 3,-0.3 0.883 109.2 59.0 -60.6 -40.6 11.9 -3.9 -3.0 53 76 A I H X S+ 0 0 48 -4,-4.3 4,-0.7 1,-0.3 -1,-0.2 0.855 105.2 50.6 -58.2 -34.5 12.5 -0.2 -3.6 54 77 A A H 4 S+ 0 0 15 -5,-0.5 -1,-0.3 -3,-0.4 -2,-0.2 0.824 108.5 51.8 -72.2 -31.6 12.9 0.1 0.2 55 78 A N H < S+ 0 0 119 -4,-1.3 -2,-0.2 -3,-0.3 -1,-0.2 0.813 103.1 58.2 -73.7 -30.8 15.4 -2.8 0.2 56 79 A Q H < S+ 0 0 155 -4,-2.1 2,-0.2 -5,-0.1 -1,-0.2 0.753 112.4 46.2 -69.6 -24.1 17.4 -1.1 -2.5 57 80 A R S < S+ 0 0 157 -4,-0.7 -34,-0.0 -3,-0.2 0, 0.0 -0.688 92.8 41.7-114.9 169.5 17.8 1.9 -0.2 58 81 A S S S+ 0 0 100 -2,-0.2 -1,-0.1 2,-0.1 0, 0.0 0.894 125.7 5.2 59.3 105.6 18.7 2.3 3.5 59 82 A K 0 0 197 1,-0.2 -2,-0.1 -3,-0.0 -1,-0.1 0.941 360.0 360.0 57.6 51.1 21.6 0.0 4.5 60 83 A S 0 0 124 -4,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.342 360.0 360.0 67.8 360.0 22.1 -1.2 0.9