==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 15-NOV-06 2JMJ . COMPND 2 MOLECULE: PROTEIN YNG1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR S.ILIN,S.D.TAVERNA,R.S.ROGERS,J.C.TANNY,H.LAVENDER,H.LI, . 69 2 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5104.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 34.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 11.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 24 A Q 0 0 233 0, 0.0 2,-0.6 0, 0.0 11,-0.1 0.000 360.0 360.0 360.0 145.6 -5.8 17.1 3.0 2 25 A E + 0 0 154 9,-0.1 2,-0.4 2,-0.0 11,-0.1 -0.937 360.0 156.8-115.7 116.2 -4.7 15.9 -0.4 3 26 A E - 0 0 110 -2,-0.6 9,-1.8 9,-0.1 7,-0.1 -0.998 37.1-123.9-139.5 132.7 -1.4 14.0 -0.7 4 27 A V B +A 11 0A 75 -2,-0.4 7,-0.2 7,-0.3 3,-0.1 -0.388 42.1 147.9 -72.2 151.1 -0.2 11.5 -3.4 5 28 A Y + 0 0 54 5,-1.4 24,-0.2 1,-0.4 -1,-0.1 0.244 42.5 58.1-143.9 -86.9 0.8 8.0 -2.2 6 29 A a S > S- 0 0 1 1,-0.2 3,-2.8 4,-0.1 -1,-0.4 -0.088 95.4 -94.4 -56.2 158.5 0.4 4.8 -4.2 7 30 A F T 3 S+ 0 0 146 1,-0.3 -1,-0.2 2,-0.1 22,-0.0 0.656 113.8 93.1 -49.9 -12.7 2.0 4.5 -7.7 8 31 A a T 3 S- 0 0 29 1,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.714 89.7-142.7 -54.7 -18.4 -1.5 5.7 -8.7 9 32 A R < + 0 0 212 -3,-2.8 2,-0.2 1,-0.3 -1,-0.2 0.555 64.8 107.7 65.1 7.9 0.2 9.1 -8.6 10 33 A N S S- 0 0 54 -4,-0.3 -5,-1.4 1,-0.1 -1,-0.3 -0.555 76.5 -81.5-110.2 174.8 -3.1 10.4 -7.2 11 34 A V B -A 4 0A 38 -7,-0.2 2,-0.8 -2,-0.2 -7,-0.3 -0.328 53.2 -85.0 -76.9 159.3 -4.2 11.5 -3.8 12 35 A S - 0 0 18 -9,-1.8 -1,-0.1 1,-0.2 -9,-0.1 -0.487 39.8-167.7 -64.7 103.6 -5.3 9.3 -0.9 13 36 A Y - 0 0 103 -2,-0.8 -1,-0.2 2,-0.2 3,-0.1 0.978 50.8 -89.5 -57.7 -59.4 -9.0 8.8 -1.5 14 37 A G S S+ 0 0 4 1,-0.3 2,-0.8 51,-0.1 54,-0.2 -0.052 103.9 81.0 179.5 -59.9 -9.7 7.3 1.9 15 38 A P + 0 0 6 0, 0.0 16,-4.0 0, 0.0 17,-0.5 -0.597 67.3 138.6 -73.2 105.3 -9.3 3.5 2.1 16 39 A M E -BC 30 65B 0 49,-2.0 49,-0.6 -2,-0.8 2,-0.3 -0.868 34.2-165.8-143.8 178.1 -5.5 3.0 2.5 17 40 A V E -BC 29 64B 0 12,-2.8 12,-3.8 47,-0.3 2,-0.4 -0.943 25.8-109.9-157.3 169.0 -2.7 1.2 4.3 18 41 A A - 0 0 0 45,-1.4 2,-0.4 10,-0.3 26,-0.2 -0.902 38.5 -98.9-114.6 141.4 1.1 1.5 4.8 19 42 A b - 0 0 0 -2,-0.4 26,-0.2 26,-0.2 44,-0.1 -0.372 30.2-166.5 -57.8 112.1 3.8 -0.7 3.3 20 43 A D + 0 0 53 24,-0.7 -1,-0.2 -2,-0.4 4,-0.1 -0.151 53.3 111.5 -93.0 38.1 4.7 -3.2 6.0 21 44 A N S S- 0 0 8 2,-0.1 30,-0.1 1,-0.1 29,-0.0 -0.934 80.3-121.3-116.5 136.4 7.8 -4.2 4.1 22 45 A P S S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 32,-0.1 0.723 112.2 17.5 -44.2 -23.6 11.5 -3.5 5.2 23 46 A A S S+ 0 0 63 27,-0.2 -2,-0.1 3,-0.0 27,-0.1 0.615 72.4 150.6-112.8 -90.6 11.7 -1.6 1.8 24 47 A c - 0 0 5 1,-0.1 -5,-0.1 26,-0.1 -3,-0.0 0.914 56.6-118.9 51.7 98.8 8.4 -0.6 0.1 25 48 A P S S+ 0 0 110 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.755 95.2 14.0 -35.6 -34.9 9.2 2.6 -1.9 26 49 A F - 0 0 117 0, 0.0 20,-0.1 0, 0.0 3,-0.1 -0.709 66.8-134.4-132.9-175.9 6.6 4.3 0.2 27 50 A E S S+ 0 0 85 -2,-0.2 2,-0.3 1,-0.2 -21,-0.0 -0.060 84.2 60.0-136.0 34.1 4.6 3.7 3.4 28 51 A W + 0 0 68 -10,-0.2 2,-0.3 -23,-0.1 -10,-0.3 -0.857 55.5 165.8-163.5 121.1 1.1 4.7 2.4 29 52 A F E -B 17 0B 9 -12,-3.8 -12,-2.8 -2,-0.3 2,-0.2 -0.991 28.8-123.1-141.8 147.3 -1.1 3.2 -0.4 30 53 A H E > -B 16 0B 0 -2,-0.3 4,-2.9 -14,-0.3 -14,-0.3 -0.611 13.7-133.3 -92.2 152.8 -4.7 3.3 -1.3 31 54 A Y T 4 S+ 0 0 9 -16,-4.0 5,-0.4 2,-0.2 -15,-0.1 0.866 113.7 52.0 -69.5 -34.5 -7.1 0.4 -1.7 32 55 A G T 4 S+ 0 0 46 -17,-0.5 -1,-0.2 1,-0.2 -16,-0.1 0.806 111.6 49.4 -69.2 -27.0 -8.3 1.8 -4.9 33 56 A C T 4 S+ 0 0 15 -23,-0.0 -2,-0.2 14,-0.0 -1,-0.2 0.927 128.6 14.1 -74.1 -48.9 -4.7 2.0 -5.8 34 57 A V S < S- 0 0 24 -4,-2.9 2,-0.3 2,-0.1 -3,-0.1 0.265 98.1 -85.3 -99.8-136.2 -4.0 -1.6 -4.8 35 58 A G S S+ 0 0 36 2,-0.0 2,-0.3 -5,-0.0 -3,-0.1 -0.782 73.1 74.1-149.7 102.5 -6.4 -4.5 -4.1 36 59 A L - 0 0 24 -5,-0.4 2,-0.4 -2,-0.3 -2,-0.1 -0.968 57.9-116.3 174.9 176.5 -8.0 -5.1 -0.7 37 60 A K S S- 0 0 140 -2,-0.3 29,-0.0 29,-0.0 -2,-0.0 -0.954 88.7 -25.5-141.1 117.5 -10.7 -4.0 1.8 38 61 A Q S S- 0 0 137 -2,-0.4 28,-0.1 27,-0.1 26,-0.0 0.573 111.3 -88.4 57.7 6.1 -9.9 -2.7 5.3 39 62 A A - 0 0 11 2,-0.1 3,-0.2 4,-0.1 5,-0.1 0.654 60.8 -66.8 63.4 130.6 -6.7 -4.8 4.9 40 63 A P - 0 0 74 0, 0.0 2,-2.1 0, 0.0 -2,-0.0 0.051 68.6 -79.4 -42.7 154.1 -6.8 -8.5 5.9 41 64 A K S S+ 0 0 208 1,-0.2 2,-0.2 2,-0.0 -2,-0.1 -0.370 120.3 15.6 -62.0 83.0 -7.2 -9.3 9.6 42 65 A G S S- 0 0 63 -2,-2.1 2,-0.3 -3,-0.2 -1,-0.2 -0.610 122.1 -18.2 155.9 -88.3 -3.5 -8.6 10.4 43 66 A K - 0 0 105 -2,-0.2 2,-0.2 -26,-0.0 -4,-0.1 -0.988 47.1-154.9-155.1 144.7 -1.3 -6.7 8.0 44 67 A W - 0 0 43 -2,-0.3 -24,-0.7 -26,-0.2 2,-0.5 -0.723 22.0-119.0-115.0 165.8 -1.3 -5.8 4.3 45 68 A Y - 0 0 31 -2,-0.2 6,-0.3 -26,-0.2 -26,-0.2 -0.939 24.0-120.8-114.1 122.8 1.5 -5.0 1.9 46 69 A b S S- 0 0 0 -2,-0.5 2,-0.3 4,-0.2 -27,-0.1 0.662 92.4 -6.7 -26.0 -35.4 1.7 -1.6 0.2 47 70 A S S > S- 0 0 21 -13,-0.1 4,-1.9 -41,-0.1 5,-0.2 -0.982 81.9 -88.6-160.7 166.0 1.5 -3.4 -3.1 48 71 A K H > S+ 0 0 144 -2,-0.3 4,-1.1 1,-0.2 -2,-0.1 0.794 135.0 38.0 -49.8 -26.8 1.6 -6.8 -4.8 49 72 A D H > S+ 0 0 107 2,-0.2 4,-4.1 3,-0.1 5,-0.4 0.903 100.2 70.3 -89.0 -51.0 5.3 -6.2 -4.7 50 73 A c H > S+ 0 0 3 1,-0.2 4,-0.6 2,-0.2 -27,-0.2 0.800 108.9 42.3 -35.3 -36.1 5.6 -4.5 -1.3 51 74 A K H >X S+ 0 0 96 -4,-1.9 4,-1.6 -6,-0.3 3,-1.4 0.967 114.1 46.6 -76.8 -58.0 4.8 -8.0 -0.1 52 75 A E H 3X S+ 0 0 68 -4,-1.1 4,-1.2 1,-0.3 -2,-0.2 0.810 108.6 59.6 -54.1 -30.3 7.0 -10.0 -2.4 53 76 A I H 3< S+ 0 0 65 -4,-4.1 -1,-0.3 1,-0.2 -2,-0.2 0.833 103.7 50.2 -67.8 -31.9 9.7 -7.5 -1.6 54 77 A A H << S+ 0 0 21 -3,-1.4 -2,-0.2 -4,-0.6 -1,-0.2 0.812 105.5 55.7 -75.2 -30.7 9.4 -8.6 2.1 55 78 A N H < S- 0 0 66 -4,-1.6 -1,-0.2 3,-0.1 -2,-0.2 0.785 102.2-146.3 -71.2 -26.0 9.7 -12.2 1.1 56 79 A Q < - 0 0 131 -4,-1.2 -3,-0.1 -5,-0.2 -2,-0.1 0.932 62.8 -14.2 57.3 101.4 13.0 -11.4 -0.6 57 80 A R S S+ 0 0 256 -5,-0.2 2,-0.3 1,-0.2 -4,-0.1 0.918 88.2 161.1 41.1 91.6 13.6 -13.5 -3.7 58 81 A S - 0 0 52 2,-0.2 -1,-0.2 1,-0.1 -2,-0.1 -0.996 51.4-128.8-141.5 144.5 11.1 -16.3 -3.5 59 82 A K 0 0 218 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.1 0.776 360.0 360.0 -60.2 -26.1 9.6 -18.8 -5.9 60 83 A S 0 0 122 -8,-0.0 -2,-0.2 -5,-0.0 -5,-0.1 -0.405 360.0 360.0 -58.5 360.0 6.1 -17.7 -4.6 61 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 62 1 P A 0 0 30 0, 0.0 2,-0.3 0, 0.0 -20,-0.1 0.000 360.0 360.0 360.0 143.3 0.3 -2.7 9.0 63 2 P R - 0 0 120 -46,-0.1 -45,-1.4 -44,-0.1 2,-0.3 -0.434 360.0-175.9 -61.2 117.7 -0.4 0.9 9.8 64 3 P T E -C 17 0B 66 -2,-0.3 2,-0.4 -47,-0.3 -47,-0.3 -0.911 28.7-168.1-125.5 154.8 -3.6 1.7 7.9 65 4 P X E +C 16 0B 82 -49,-0.6 -49,-2.0 -2,-0.3 2,-0.3 -0.968 24.6 172.9-137.2 111.2 -5.9 4.7 7.2 66 5 P Q + 0 0 86 -2,-0.4 3,-0.1 -51,-0.3 -49,-0.0 -0.808 28.6 173.4-122.8 165.9 -9.2 3.9 5.7 67 6 P T - 0 0 93 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 -0.008 56.4-100.3-158.7 33.1 -12.5 5.6 4.7 68 7 P A - 0 0 65 -54,-0.2 2,-0.4 -52,-0.1 -1,-0.3 0.120 43.4 -88.7 63.9 173.8 -14.5 3.0 2.8 69 8 P R 0 0 141 -55,-0.1 -1,-0.0 1,-0.1 -3,-0.0 -0.939 360.0 360.0-124.1 146.0 -14.7 2.9 -1.0 70 9 P K 0 0 214 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.655 360.0 360.0 -80.5 360.0 -17.2 4.5 -3.4