==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 27-NOV-06 2JMP . COMPND 2 MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; . SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA GENITALIUM; . AUTHOR T.J.LOWERY,J.G.PELTON,D.E.WEMMER,BERKELEY STRUCTURAL . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8656.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 15.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 32.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M > 0 0 185 0, 0.0 4,-0.8 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0-113.8 -8.7 14.4 -7.6 2 2 A E H > + 0 0 157 1,-0.2 4,-2.4 2,-0.2 5,-0.1 0.705 360.0 85.7 -70.5 -18.9 -10.7 11.2 -7.1 3 3 A Q H >> S+ 0 0 72 2,-0.2 4,-2.6 1,-0.2 3,-1.8 0.949 91.3 40.9 -44.4 -72.6 -7.5 9.2 -7.6 4 4 A F H 3>>S+ 0 0 90 1,-0.3 4,-3.0 2,-0.2 5,-0.6 0.897 116.2 52.2 -43.2 -48.7 -6.3 9.4 -4.0 5 5 A N H 3X5S+ 0 0 97 -4,-0.8 4,-0.9 3,-0.2 -1,-0.3 0.809 114.2 44.9 -59.5 -30.0 -9.9 8.8 -3.0 6 6 A A H X5S+ 0 0 116 -4,-3.0 4,-1.5 -5,-0.4 3,-0.9 0.950 110.2 51.3 -62.7 -51.7 -6.7 5.2 -0.8 9 9 A S H 3X< S+ 0 0 120 -4,-1.3 3,-0.6 1,-0.2 -1,-0.3 0.865 116.9 44.8 -46.6 -40.5 -11.3 -2.3 2.4 14 14 A H H << S+ 0 0 93 -4,-1.2 -2,-0.2 -3,-1.1 -1,-0.2 0.971 123.8 31.2 -69.1 -57.6 -7.9 -3.8 3.1 15 15 A Y T 3< S+ 0 0 76 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 -0.055 78.9 129.3 -92.7 31.9 -7.3 -2.2 6.5 16 16 A E S < S+ 0 0 121 -3,-0.6 -1,-0.2 -5,-0.3 -3,-0.1 0.206 87.2 27.5 -72.4 21.0 -11.0 -2.2 7.3 17 17 A K S S+ 0 0 171 -5,-0.1 2,-0.7 -3,-0.1 3,-0.4 0.395 97.0 84.1-150.2 -25.3 -10.0 -3.9 10.5 18 18 A T > + 0 0 59 1,-0.2 4,-1.7 -4,-0.1 3,-0.4 -0.033 53.9 137.1 -78.1 35.8 -6.4 -2.7 11.2 19 19 A I H >> + 0 0 121 -2,-0.7 4,-1.6 1,-0.2 3,-1.5 0.949 62.8 56.1 -44.6 -74.4 -7.9 0.4 12.8 20 20 A G H 3> S+ 0 0 45 -3,-0.4 4,-0.6 1,-0.3 -1,-0.2 0.785 105.5 54.9 -26.7 -49.3 -5.6 0.5 15.9 21 21 A F H >> S+ 0 0 50 -3,-0.4 4,-1.8 2,-0.2 3,-1.2 0.955 110.6 44.7 -53.7 -52.5 -2.7 0.5 13.4 22 22 A H H <<>S+ 0 0 94 -4,-1.7 5,-2.0 -3,-1.5 -2,-0.2 0.968 110.3 51.7 -55.8 -58.7 -4.2 3.6 11.7 23 23 A D H 3<5S+ 0 0 120 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.607 112.8 56.0 -56.0 -7.9 -5.0 5.4 15.0 24 24 A K H <<5S- 0 0 123 -3,-1.2 -2,-0.2 -4,-0.6 -1,-0.2 0.930 131.3 -32.1 -88.3 -77.1 -1.3 4.6 15.6 25 25 A Y T <5S+ 0 0 63 -4,-1.8 3,-0.4 2,-0.1 -3,-0.1 0.765 129.2 58.3-111.5 -70.1 0.9 6.0 12.9 26 26 A I T > 5S+ 0 0 50 -5,-0.3 3,-1.0 1,-0.2 -4,-0.2 0.733 75.7 131.7 -36.5 -25.8 -0.7 6.1 9.4 27 27 A K T 3 - 0 0 42 1,-0.2 4,-1.6 30,-0.1 5,-0.2 -0.113 60.3-152.0 -41.0 116.7 8.2 5.0 12.7 46 46 A E H > S+ 0 0 117 2,-0.2 4,-1.9 3,-0.2 -1,-0.2 0.931 91.8 42.2 -60.8 -48.7 10.9 2.4 12.6 47 47 A F H >> S+ 0 0 148 2,-0.2 4,-1.6 1,-0.2 3,-1.2 0.998 111.2 51.3 -62.5 -67.6 8.5 -0.4 13.7 48 48 A A H 3> S+ 0 0 2 1,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.823 116.3 45.6 -37.8 -39.1 5.5 0.5 11.5 49 49 A R H 3X S+ 0 0 55 -4,-1.6 4,-2.4 2,-0.2 -1,-0.3 0.840 107.3 58.4 -75.9 -34.9 8.0 0.5 8.7 50 50 A N H < S+ 0 0 14 -4,-1.8 3,-0.5 -5,-0.4 5,-0.3 0.922 115.1 37.3 -50.4 -51.3 5.0 -2.9 6.6 53 53 A N H 3< S+ 0 0 92 -4,-2.4 -1,-0.3 1,-0.2 3,-0.2 0.664 107.9 67.0 -77.4 -15.6 8.1 -3.6 4.5 54 54 A D H 3< S- 0 0 84 -4,-1.3 -1,-0.2 -3,-0.3 -2,-0.2 0.781 131.1 -16.6 -74.1 -25.8 8.4 -7.1 6.0 55 55 A N S << S+ 0 0 104 -4,-1.5 -1,-0.2 -3,-0.5 -2,-0.2 -0.369 93.6 111.8 179.0 92.1 5.2 -8.1 4.2 56 56 A S - 0 0 19 -3,-0.2 -3,-0.1 16,-0.1 4,-0.1 0.534 35.5-168.6-129.7 -71.3 2.7 -5.6 2.8 57 57 A E > - 0 0 95 -5,-0.3 3,-3.0 15,-0.2 4,-0.3 0.941 4.3-176.9 72.3 50.1 2.4 -5.5 -1.0 58 58 A I T 3> S+ 0 0 12 1,-0.3 4,-1.7 2,-0.2 3,-0.4 0.531 80.3 70.3 -57.6 0.3 0.4 -2.3 -1.2 59 59 A I H 3> S+ 0 0 45 2,-0.2 4,-1.2 1,-0.2 -1,-0.3 0.772 74.4 79.9 -86.4 -28.3 0.5 -3.2 -4.9 60 60 A H H <4 S+ 0 0 126 -3,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.664 116.0 15.7 -51.5 -17.4 -1.9 -6.1 -4.3 61 61 A L H >4 S+ 0 0 19 -3,-0.4 3,-1.0 -4,-0.3 4,-0.3 0.638 117.5 64.7-125.0 -42.4 -4.6 -3.5 -4.3 62 62 A A H 3X S+ 0 0 1 -4,-1.7 4,-0.7 1,-0.3 7,-0.3 0.473 84.5 83.9 -65.2 1.5 -3.2 -0.3 -5.9 63 63 A E T 3< S+ 0 0 110 -4,-1.2 -1,-0.3 1,-0.2 -4,-0.1 0.172 84.2 58.1 -90.2 18.8 -2.9 -2.4 -9.0 64 64 A S T <4 S+ 0 0 93 -3,-1.0 -1,-0.2 4,-0.1 -2,-0.2 0.655 99.8 50.8-115.0 -31.4 -6.5 -1.6 -9.9 65 65 A L T 4 S+ 0 0 57 -4,-0.3 2,-0.2 -3,-0.1 -2,-0.1 0.764 117.3 39.7 -79.3 -26.3 -6.4 2.2 -10.0 66 66 A Y S < S- 0 0 29 -4,-0.7 3,-0.2 1,-0.1 0, 0.0 -0.738 97.7 -98.0-119.1 168.5 -3.4 2.2 -12.3 67 67 A E S S- 0 0 192 -2,-0.2 -1,-0.1 1,-0.2 -4,-0.1 0.919 101.2 -36.8 -49.4 -49.4 -2.4 0.1 -15.3 68 68 A G - 0 0 46 -6,-0.1 -1,-0.2 -3,-0.0 -5,-0.1 -0.324 64.5-134.8 178.5 89.1 -0.2 -2.0 -13.1 69 69 A I - 0 0 15 -7,-0.3 -31,-0.1 -3,-0.2 3,-0.1 -0.070 6.2-149.5 -48.5 150.1 1.8 -0.5 -10.2 70 70 A K - 0 0 141 -33,-1.5 2,-0.3 1,-0.4 -32,-0.2 0.795 62.1 -53.1 -93.0 -35.2 5.4 -1.7 -10.0 71 71 A S E -b 38 0A 53 -34,-0.6 -32,-0.6 -13,-0.1 -1,-0.4 -0.978 46.0-121.7 177.8-176.2 5.8 -1.4 -6.2 72 72 A V E +b 39 0A 30 -2,-0.3 2,-0.3 -34,-0.2 -32,-0.2 -0.991 21.6 175.9-150.8 150.3 5.4 0.7 -3.1 73 73 A N E -b 40 0A 69 -34,-1.7 -32,-1.4 -2,-0.3 2,-0.3 -0.992 14.0-152.9-157.5 151.2 7.6 1.9 -0.2 74 74 A F E +b 41 0A 23 -2,-0.3 2,-0.2 -34,-0.2 -32,-0.2 -0.942 22.1 158.0-126.8 147.7 7.6 4.2 2.8 75 75 A V E -b 42 0A 10 -34,-1.5 -32,-3.1 -2,-0.3 2,-0.2 -0.696 40.4 -64.3-146.6-161.6 10.4 6.1 4.5 76 76 A N > - 0 0 41 -2,-0.2 4,-3.9 -34,-0.2 5,-0.4 -0.600 47.8-104.2 -97.4 159.6 11.3 9.0 6.8 77 77 A E H > S+ 0 0 143 1,-0.2 4,-1.4 -2,-0.2 -1,-0.1 0.835 124.2 46.6 -48.3 -36.6 10.7 12.7 6.2 78 78 A Q H > S+ 0 0 160 2,-0.2 4,-1.4 3,-0.1 -1,-0.2 0.965 116.7 40.8 -72.4 -53.2 14.4 13.0 5.5 79 79 A D H >> S+ 0 0 75 1,-0.2 4,-1.3 2,-0.2 3,-0.9 0.954 113.7 53.5 -59.4 -50.8 14.7 10.0 3.2 80 80 A F H >X S+ 0 0 11 -4,-3.9 4,-1.2 1,-0.3 3,-0.7 0.891 105.8 55.7 -50.7 -41.3 11.4 10.8 1.5 81 81 A F H 3X S+ 0 0 128 -4,-1.4 4,-1.6 -5,-0.4 -1,-0.3 0.850 100.7 57.5 -61.0 -35.6 12.9 14.2 0.8 82 82 A F H < S+ 0 0 65 -4,-1.2 3,-0.5 1,-0.2 -1,-0.2 0.666 110.5 65.3 -84.3 -16.7 12.0 14.3 -4.6 85 85 A A H 3< S+ 0 0 49 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.746 78.1 84.9 -75.4 -23.6 15.3 16.0 -4.3 86 86 A K T 3< + 0 0 163 -4,-0.9 -1,-0.2 -3,-0.2 -2,-0.1 0.881 66.0 100.3 -43.6 -46.3 16.7 13.7 -7.0 87 87 A L < - 0 0 93 -3,-0.5 4,-0.1 -4,-0.3 -3,-0.0 -0.146 67.9-148.5 -45.4 129.8 15.3 16.1 -9.6 88 88 A E - 0 0 159 3,-0.0 -1,-0.1 1,-0.0 0, 0.0 0.536 51.4 -53.9 -75.3-133.5 18.1 18.4 -10.8 89 89 A E S S+ 0 0 159 2,-0.1 -2,-0.1 0, 0.0 2,-0.0 0.806 120.0 73.3 -80.4 -31.1 17.6 21.9 -12.0 90 90 A N + 0 0 84 1,-0.1 2,-0.2 2,-0.0 0, 0.0 -0.260 52.6 139.0 -78.3 169.4 14.9 21.0 -14.4 91 91 A S + 0 0 75 -4,-0.1 2,-2.9 -2,-0.0 3,-0.3 -0.519 65.0 16.4-168.1-120.1 11.3 19.9 -13.4 92 92 A R + 0 0 200 1,-0.2 -2,-0.0 -2,-0.2 0, 0.0 -0.357 68.1 148.1 -74.7 64.1 7.9 20.6 -14.8 93 93 A D + 0 0 102 -2,-2.9 -1,-0.2 2,-0.1 2,-0.2 0.587 36.9 110.1 -74.9 -9.5 9.3 21.9 -18.1 94 94 A T - 0 0 105 -3,-0.3 2,-0.4 1,-0.0 -2,-0.0 -0.459 51.1-167.2 -69.6 136.2 6.2 20.5 -19.8 95 95 A L + 0 0 158 -2,-0.2 2,-0.2 2,-0.0 -2,-0.1 -0.888 21.2 149.3-130.9 102.1 3.9 23.2 -21.2 96 96 A Y - 0 0 197 -2,-0.4 2,-0.3 4,-0.0 0, 0.0 -0.521 29.2-140.1-118.5-173.2 0.4 22.1 -22.2 97 97 A Q > - 0 0 127 -2,-0.2 2,-2.1 0, 0.0 3,-0.5 -0.981 25.4-120.2-154.8 140.3 -3.1 23.7 -22.3 98 98 A N T 3 S+ 0 0 168 -2,-0.3 -2,-0.0 1,-0.3 0, 0.0 -0.056 110.7 52.1 -71.5 40.1 -6.6 22.5 -21.6 99 99 A S T 3 0 0 72 -2,-2.1 -1,-0.3 0, 0.0 0, 0.0 -0.111 360.0 360.0-171.2 57.0 -7.4 23.4 -25.3 100 100 A G < 0 0 124 -3,-0.5 -2,-0.0 0, 0.0 -4,-0.0 -0.500 360.0 360.0 -71.2 360.0 -4.9 21.8 -27.7