==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIVIRAL PROTEIN 07-DEC-06 2JMV . COMPND 2 MOLECULE: SCYTOVIRIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SCYTONEMA VARIUM; . AUTHOR R.L.MCFEETERS,R.A.BYRD . 94 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4973.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 33.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 3 0, 0.0 26,-0.2 0, 0.0 40,-0.1 0.000 360.0 360.0 360.0 68.2 6.6 -6.3 3.0 2 2 A S - 0 0 85 1,-0.4 41,-0.0 27,-0.1 39,-0.0 0.894 360.0 -55.5 -97.4 -68.8 5.0 -8.9 5.3 3 3 A G S > S- 0 0 12 40,-0.0 3,-3.9 39,-0.0 2,-2.0 -0.939 77.9 -43.3-159.7 179.8 1.8 -10.0 4.1 4 4 A P T 3 S+ 0 0 48 0, 0.0 89,-2.4 0, 0.0 25,-0.1 -0.334 134.6 28.4 -57.7 85.6 -1.6 -8.9 3.1 5 5 A T T 3 S+ 0 0 45 -2,-2.0 48,-0.1 87,-0.3 23,-0.1 0.249 72.9 127.9 152.3 -27.3 -1.9 -6.6 5.8 6 6 A Y < - 0 0 122 -3,-3.9 22,-0.2 1,-0.2 3,-0.2 0.789 49.3-162.3 -36.5 -26.4 1.6 -5.4 6.7 7 7 A a - 0 0 25 -4,-0.4 -1,-0.2 20,-0.2 21,-0.2 0.869 13.8-143.7 48.7 48.3 0.2 -2.4 6.4 8 8 A W - 0 0 41 19,-0.7 -1,-0.2 1,-0.2 19,-0.2 -0.231 34.3-116.6 -38.3 107.5 3.4 -0.5 6.1 9 9 A N - 0 0 115 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.767 37.0-164.8 -28.6 -38.8 1.8 2.3 8.0 10 10 A E + 0 0 2 1,-0.1 2,-0.3 7,-0.1 -1,-0.2 0.919 49.6 105.6 45.9 56.4 2.2 4.3 5.0 11 11 A A + 0 0 43 6,-0.1 -1,-0.1 1,-0.1 -2,-0.1 -0.776 36.3 83.2-162.6 114.3 1.6 7.5 6.9 12 12 A N S S+ 0 0 118 1,-0.4 -1,-0.1 -2,-0.3 6,-0.1 0.298 83.5 39.2 157.1 38.5 4.3 9.9 7.8 13 13 A N - 0 0 89 1,-0.1 -1,-0.4 -3,-0.1 6,-0.2 -0.923 62.6-126.1 175.4 161.9 5.0 12.3 4.7 14 14 A P S S+ 0 0 109 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.807 103.1 60.4 -90.8 -34.0 3.3 14.2 1.7 15 15 A G S S- 0 0 28 2,-0.1 3,-0.1 1,-0.1 -2,-0.0 0.974 136.9 -35.2 -52.9 -53.0 5.4 12.8 -1.2 16 16 A G S S- 0 0 3 1,-0.7 -4,-0.2 57,-0.0 57,-0.2 -0.645 92.5 -62.8-147.0-163.0 4.1 9.7 -0.3 17 17 A P S S- 0 0 2 0, 0.0 -1,-0.7 0, 0.0 -2,-0.1 0.317 113.7 -27.3 -70.0-144.0 3.3 8.2 3.0 18 18 A N S S- 0 0 27 1,-0.2 -9,-0.0 -3,-0.1 -3,-0.0 0.663 118.6 -87.6 -38.7 -8.9 6.1 7.8 5.5 19 19 A R - 0 0 144 -6,-0.2 -1,-0.2 53,-0.1 54,-0.1 0.869 56.1 -74.3 86.2 92.6 7.2 7.6 1.8 20 20 A b S S+ 0 0 34 52,-0.2 6,-0.3 1,-0.2 3,-0.1 0.252 78.9 170.6 -9.1 118.4 6.8 4.0 0.8 21 21 A S + 0 0 54 4,-1.7 2,-0.3 1,-0.2 5,-0.2 0.408 35.9 27.7-138.1 9.3 9.9 3.3 2.9 22 22 A N S S+ 0 0 57 1,-0.2 3,-0.4 -14,-0.0 16,-0.2 -0.966 99.7 36.9-157.9 173.5 10.7 -0.3 3.4 23 23 A N S > S- 0 0 0 14,-1.2 3,-1.4 -2,-0.3 15,-0.4 0.923 150.6 -29.0 42.0 53.9 10.3 -3.6 1.9 24 24 A K T 3 S- 0 0 85 1,-0.3 -1,-0.3 14,-0.2 14,-0.1 0.604 121.7 -61.9 74.9 13.5 10.7 -1.9 -1.7 25 25 A Q T 3 S+ 0 0 114 -3,-0.4 -4,-1.7 1,-0.2 2,-0.3 0.134 126.8 78.3 96.0 -9.8 9.3 0.9 0.2 26 26 A b < - 0 0 1 -3,-1.4 2,-0.4 -6,-0.3 -1,-0.2 -0.905 64.0-145.4-125.6 160.5 6.0 -0.8 1.0 27 27 A D + 0 0 7 -2,-0.3 -19,-0.7 -26,-0.2 -20,-0.2 -0.910 61.4 93.8-124.2 145.4 4.9 -3.3 3.5 28 28 A G S S- 0 0 0 -2,-0.4 15,-0.9 -22,-0.2 -1,-0.1 0.426 110.1 -23.7 141.3 25.0 2.4 -5.8 2.9 29 29 A A S S+ 0 0 27 13,-0.3 13,-0.3 -26,-0.1 -27,-0.1 0.040 87.1 138.8 140.1 -30.7 4.5 -9.1 1.6 30 30 A R - 0 0 33 -7,-0.2 2,-0.4 10,-0.2 10,-0.3 0.210 39.5-144.4 -44.0 169.2 7.9 -7.8 0.2 31 31 A T B -A 39 0A 37 8,-5.5 8,-2.0 6,-0.2 7,-1.2 -0.991 14.8-128.8-134.3 129.7 11.1 -9.6 0.9 32 32 A c > - 0 0 34 -2,-0.4 3,-4.0 6,-0.4 7,-0.1 -0.093 36.1 -92.7 -80.0-168.8 14.4 -7.8 1.3 33 33 A S T 3 S+ 0 0 108 1,-0.4 -1,-0.1 2,-0.2 7,-0.0 0.491 144.6 43.5 -82.3 3.0 17.6 -8.5 -0.4 34 34 A S T 3 S- 0 0 101 5,-0.0 -1,-0.4 0, 0.0 -2,-0.2 -0.036 129.6-110.9-126.0 13.5 18.1 -10.5 2.4 35 35 A S S < S+ 0 0 88 -3,-4.0 -2,-0.2 -4,-0.2 4,-0.1 0.373 89.8 121.9 67.2 -8.0 14.3 -11.6 1.8 36 36 A G S S- 0 0 39 -5,-0.4 -1,-0.1 1,-0.1 2,-0.0 0.959 94.9 -66.7 -45.9 -73.9 13.8 -9.7 4.9 37 37 A F S S+ 0 0 100 -6,-0.3 -14,-1.2 -10,-0.0 -5,-0.3 -0.234 108.3 87.8 174.6 80.2 11.5 -7.5 3.5 38 38 A c S S+ 0 0 50 -7,-1.2 -6,-0.4 1,-0.5 2,-0.3 0.145 85.5 47.8-171.3 19.2 12.9 -5.0 0.6 39 39 A Q B S+A 31 0A 91 -8,-2.0 -8,-5.5 -7,-0.1 2,-0.6 -0.945 91.5 38.6-162.1 150.1 12.5 -6.9 -2.4 40 40 A G S S- 0 0 31 -2,-0.3 2,-0.3 -10,-0.3 -10,-0.2 -0.838 95.0 -33.4 111.5-112.7 9.6 -8.9 -3.8 41 41 A T - 0 0 71 -2,-0.6 2,-0.9 -40,-0.1 -13,-0.2 -0.992 33.0-133.6-154.3 150.0 5.9 -7.6 -3.5 42 42 A S S S- 0 0 17 -13,-0.3 -13,-0.3 -2,-0.3 -15,-0.1 -0.736 75.8 -72.0-107.9 83.2 3.4 -5.6 -1.1 43 43 A R - 0 0 17 -15,-0.9 -14,-0.1 -2,-0.9 -1,-0.1 0.808 56.6-129.6 26.7 67.8 0.4 -7.9 -1.1 44 44 A K - 0 0 137 1,-0.2 2,-5.0 33,-0.1 -1,-0.2 -0.161 21.7-120.5 -40.2 101.5 -0.5 -7.0 -4.6 45 45 A P + 0 0 10 0, 0.0 -1,-0.2 0, 0.0 39,-0.1 -0.155 60.7 173.2 -51.6 65.7 -4.1 -6.3 -3.7 46 46 A D - 0 0 66 -2,-5.0 2,-3.8 1,-0.1 4,-0.3 -0.243 50.9 -78.4 -77.9 170.8 -4.4 -9.0 -6.1 47 47 A P S S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 -0.185 121.0 61.9 -66.9 56.0 -7.6 -10.9 -7.1 48 48 A G S S+ 0 0 53 -2,-3.8 0, 0.0 0, 0.0 0, 0.0 0.302 108.4 22.5-140.2 -77.2 -7.3 -12.9 -3.9 49 49 A P + 0 0 36 0, 0.0 28,-0.1 0, 0.0 -5,-0.0 0.978 65.9 171.8 -58.0 -84.0 -7.5 -10.9 -0.7 50 50 A K S S+ 0 0 74 -4,-0.3 27,-0.1 1,-0.2 29,-0.1 0.786 88.4 1.2 75.1 29.7 -9.4 -7.7 -2.0 51 51 A G S S+ 0 0 2 38,-0.2 2,-7.7 25,-0.1 40,-2.2 -0.397 102.1 98.1 157.4 -65.3 -9.7 -6.5 1.5 52 52 A P B S+b 92 0B 61 0, 0.0 2,-0.3 0, 0.0 41,-0.3 0.298 92.4 54.7 -39.7 27.2 -8.0 -9.1 3.7 53 53 A T B S+C 92 0B 0 -2,-7.7 39,-4.4 39,-0.6 38,-3.6 -0.898 70.2 155.0-152.1 165.2 -5.2 -6.5 3.4 54 54 A Y + 0 0 97 22,-0.5 22,-0.1 37,-0.3 39,-0.1 -0.571 17.6 162.2 163.5 130.3 -5.5 -2.8 4.3 55 55 A a S S+ 0 0 12 -2,-0.2 20,-0.2 -45,-0.0 21,-0.1 0.675 73.8 8.6-130.2 -37.4 -3.3 0.3 5.4 56 56 A W - 0 0 61 -45,-0.0 19,-0.2 0, 0.0 18,-0.1 0.280 58.0-148.2-109.9-122.3 -5.0 3.6 4.8 57 57 A D S S+ 0 0 91 -2,-0.0 18,-0.1 -3,-0.0 17,-0.1 0.348 76.2 27.9 156.6 10.7 -8.6 4.3 3.8 58 58 A E + 0 0 103 15,-0.2 8,-2.3 3,-0.0 9,-0.2 -0.061 61.9 113.9 175.5 76.8 -8.7 7.5 1.7 59 59 A A + 0 0 1 6,-0.3 9,-1.6 7,-0.2 13,-0.1 0.183 50.5 102.2-134.9 13.6 -5.9 9.0 -0.4 60 60 A K + 0 0 98 7,-0.3 8,-0.3 8,-0.2 26,-0.1 0.926 51.4 94.6 -63.3 -55.8 -7.4 8.7 -4.0 61 61 A N S S- 0 0 98 1,-0.1 7,-0.7 6,-0.1 3,-0.4 0.045 77.2-125.7 -44.3 153.2 -8.5 12.0 -4.8 62 62 A P S S+ 0 0 94 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.340 99.3 13.8 -85.4 5.1 -6.2 14.2 -6.7 63 63 A G S S+ 0 0 56 0, 0.0 3,-0.1 0, 0.0 -2,-0.1 -0.045 126.1 33.8-174.5 54.4 -6.3 17.1 -4.3 64 64 A G S S+ 0 0 59 1,-0.4 -4,-0.0 -3,-0.4 -5,-0.0 -0.030 89.6 65.2-170.6 -76.4 -7.8 16.2 -0.9 65 65 A P S S- 0 0 42 0, 0.0 -1,-0.4 0, 0.0 -6,-0.3 0.153 116.0 -64.4 -59.6-177.8 -7.5 12.7 0.8 66 66 A N S S- 0 0 56 -8,-2.3 -7,-0.2 -3,-0.1 8,-0.1 0.760 88.7-123.0 -43.6 -20.0 -4.0 11.6 1.8 67 67 A R + 0 0 108 -9,-0.2 -7,-0.3 -6,-0.0 -6,-0.1 0.800 66.4 122.6 75.9 123.1 -3.6 11.8 -2.0 68 68 A d + 0 0 3 -9,-1.6 -8,-0.2 -7,-0.7 6,-0.1 -0.105 11.2 161.7-159.0 -92.6 -2.5 9.1 -4.2 69 69 A S S S+ 0 0 33 1,-0.2 -9,-0.1 4,-0.1 16,-0.1 -0.023 78.5 46.6 87.7 -35.6 -4.8 8.3 -6.9 70 70 A N S S- 0 0 117 11,-0.1 13,-0.2 14,-0.1 -1,-0.2 0.774 130.9 -61.1-109.3 -39.8 -2.2 6.5 -8.9 71 71 A S S S+ 0 0 43 14,-0.1 -3,-0.1 13,-0.1 -11,-0.0 0.346 102.9 88.2 161.9 35.7 -0.4 4.3 -6.6 72 72 A K S S+ 0 0 86 -13,-0.1 -52,-0.2 -56,-0.1 -53,-0.1 0.100 95.4 15.0-144.0 29.2 1.5 6.1 -3.6 73 73 A Q S S+ 0 0 1 -57,-0.2 -15,-0.2 -54,-0.1 12,-0.1 0.252 86.9 115.7 163.9 45.8 -0.5 6.6 -0.6 74 74 A d - 0 0 2 1,-0.2 12,-0.2 10,-0.2 11,-0.1 -0.029 64.9 -93.5-111.3-146.8 -3.7 4.5 -0.8 75 75 A D - 0 0 5 10,-0.8 -21,-0.2 -19,-0.2 -1,-0.2 0.681 45.2 -83.7-106.5 -97.3 -4.6 1.5 1.7 76 76 A G S S+ 0 0 2 -23,-0.3 -22,-0.5 -22,-0.1 -26,-0.1 0.551 110.1 38.8-150.1 -23.7 -3.9 -2.2 1.5 77 77 A A S S+ 0 0 0 -24,-0.4 12,-2.1 -27,-0.1 13,-0.8 -0.189 95.5 101.7-124.1 34.2 -6.4 -4.2 -0.6 78 78 A R - 0 0 38 10,-0.3 8,-0.2 11,-0.2 2,-0.1 -0.685 58.5-146.6-115.9 170.1 -7.0 -1.6 -3.2 79 79 A T - 0 0 16 5,-0.3 2,-1.0 -2,-0.2 7,-0.2 -0.430 28.4-123.9-148.6 75.8 -5.9 -1.2 -6.7 80 80 A e S S- 0 0 4 1,-0.4 7,-0.3 2,-0.3 -2,-0.0 0.380 88.8 -51.7 -3.8 38.5 -5.4 2.4 -7.7 81 81 A S S S- 0 0 98 -2,-1.0 -1,-0.4 1,-0.2 6,-0.1 0.024 127.6 -25.1 91.1 -14.7 -7.7 1.7 -10.3 82 82 A S S S+ 0 0 87 -12,-0.2 -2,-0.3 4,-0.1 -1,-0.2 0.391 122.3 80.3 159.1 10.2 -5.5 -1.1 -11.0 83 83 A S S S- 0 0 95 -13,-0.2 -3,-0.1 3,-0.1 -4,-0.1 0.498 106.8 -86.8-111.6 0.6 -1.8 -0.6 -9.8 84 84 A G S S+ 0 0 13 -39,-0.1 -5,-0.3 -40,-0.1 -6,-0.2 0.811 105.8 70.2 103.0 41.4 -2.3 -1.5 -6.1 85 85 A F S S+ 0 0 30 -15,-0.1 -10,-0.8 -16,-0.1 2,-0.5 0.263 89.6 23.3-146.5 -82.7 -3.3 1.5 -4.4 86 86 A e S S+ 0 0 10 -8,-0.2 -3,-0.1 -12,-0.2 -4,-0.1 -0.832 99.5 43.2-116.0 116.8 -6.8 3.2 -5.0 87 87 A Q S S+ 0 0 89 -2,-0.5 -1,-0.1 -7,-0.3 -7,-0.1 -0.027 88.6 76.3 163.5 -42.1 -10.0 1.5 -6.2 88 88 A G S S- 0 0 13 -3,-0.1 -10,-0.3 -43,-0.0 -2,-0.0 0.788 86.5 -95.4 -63.8-123.3 -10.4 -1.8 -4.5 89 89 A T - 0 0 80 -12,-2.1 -11,-0.2 -36,-0.0 -38,-0.2 0.647 28.8-132.5-129.6 -63.3 -11.6 -2.2 -0.9 90 90 A A + 0 0 18 -13,-0.8 -36,-0.2 -15,-0.1 -39,-0.0 0.531 38.5 152.0 91.0 122.9 -9.2 -2.6 2.0 91 91 A G - 0 0 29 -38,-3.6 -37,-0.3 -40,-2.2 -86,-0.0 0.400 40.5-134.3-157.5 -12.6 -10.0 -5.4 4.5 92 92 A H B -bC 52 53B 96 -39,-4.4 2,-0.9 -41,-1.9 -39,-0.6 0.768 14.5-116.4 59.7 126.5 -6.3 -6.7 6.3 93 93 A A 0 0 38 -89,-2.4 -1,-0.1 -41,-0.3 -39,-0.1 -0.784 360.0 360.0 -97.5 101.9 -5.3 -10.4 6.8 94 94 A A 0 0 130 -2,-0.9 -89,-0.1 -41,-0.1 -41,-0.0 -0.563 360.0 360.0 -69.9 360.0 -5.0 -11.0 10.5