==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 11-DEC-06 2JMW . COMPND 2 MOLECULE: DNA BINDING PROTEIN GT-1; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR T.NAGATA,E.NIYADA,K.NOTO,Y.IKEDA,Y.YAMAMOTO,S.UESUGI,J.MURAT . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7990.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 81 A K 0 0 220 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -56.9 10.4 14.7 14.7 2 82 A K + 0 0 128 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.916 360.0 178.7-127.0 153.5 10.1 11.0 15.6 3 83 A R + 0 0 224 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.779 18.3 153.4-158.3 107.5 12.6 8.2 16.0 4 84 A A - 0 0 75 -2,-0.2 -1,-0.1 3,-0.2 0, 0.0 0.521 40.8-144.1-109.2 -12.7 11.8 4.6 17.1 5 85 A E S S+ 0 0 196 2,-0.2 3,-0.1 1,-0.1 -2,-0.0 0.871 74.7 99.3 48.3 41.6 14.8 3.0 15.4 6 86 A T S S+ 0 0 75 1,-0.4 2,-0.4 0, 0.0 -1,-0.1 0.708 75.0 35.4-118.4 -54.9 12.5 0.0 14.6 7 87 A W S S- 0 0 35 4,-0.0 -1,-0.4 3,-0.0 2,-0.2 -0.857 71.7-141.8-109.3 142.4 11.3 0.3 11.0 8 88 A V > - 0 0 69 -2,-0.4 4,-3.1 -3,-0.1 5,-0.3 -0.589 28.7-107.0 -98.6 162.1 13.3 1.7 8.0 9 89 A Q H > S+ 0 0 141 1,-0.2 4,-3.1 -2,-0.2 5,-0.3 0.891 119.4 54.9 -52.1 -43.3 12.2 3.8 5.1 10 90 A D H > S+ 0 0 105 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.973 114.3 37.0 -55.0 -61.4 12.5 0.8 2.8 11 91 A E H > S+ 0 0 40 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.956 118.1 51.1 -57.0 -54.4 10.2 -1.5 4.9 12 92 A T H X S+ 0 0 24 -4,-3.1 4,-3.0 1,-0.2 5,-0.2 0.939 111.4 47.1 -48.4 -57.3 7.8 1.3 5.9 13 93 A R H X S+ 0 0 165 -4,-3.1 4,-2.5 -5,-0.3 -1,-0.2 0.922 112.8 49.9 -51.9 -49.6 7.4 2.4 2.3 14 94 A S H X S+ 0 0 22 -4,-2.5 4,-2.3 -5,-0.3 -1,-0.2 0.935 114.4 44.4 -56.0 -50.1 6.8 -1.1 1.2 15 95 A L H X S+ 0 0 0 -4,-3.1 4,-2.7 2,-0.2 5,-0.3 0.979 111.9 50.9 -59.1 -60.5 4.2 -1.7 3.9 16 96 A I H X S+ 0 0 19 -4,-3.0 4,-2.3 1,-0.2 -2,-0.2 0.914 111.5 48.9 -42.6 -57.5 2.4 1.5 3.4 17 97 A M H >X S+ 0 0 124 -4,-2.5 4,-2.5 1,-0.2 3,-0.8 0.952 110.9 48.3 -48.7 -61.1 2.1 0.9 -0.3 18 98 A F H 3X S+ 0 0 39 -4,-2.3 4,-2.0 1,-0.3 -1,-0.2 0.855 115.1 47.1 -49.3 -38.6 0.8 -2.6 0.1 19 99 A R H 3X S+ 0 0 17 -4,-2.7 4,-1.0 2,-0.2 -1,-0.3 0.783 109.3 54.8 -74.9 -28.1 -1.7 -1.2 2.6 20 100 A R H << S+ 0 0 170 -4,-2.3 4,-0.4 -3,-0.8 -2,-0.2 0.893 114.1 38.9 -72.2 -41.3 -2.6 1.6 0.3 21 101 A G H >< S+ 0 0 68 -4,-2.5 3,-0.5 1,-0.2 4,-0.3 0.881 120.7 43.6 -76.6 -39.7 -3.6 -0.7 -2.6 22 102 A M H >X S+ 0 0 20 -4,-2.0 3,-1.4 -5,-0.3 4,-1.0 0.671 87.6 95.7 -78.4 -17.6 -5.2 -3.4 -0.4 23 103 A D H >X S+ 0 0 55 -4,-1.0 3,-1.7 1,-0.3 4,-1.3 0.867 77.2 60.5 -37.7 -50.8 -7.0 -0.7 1.6 24 104 A G H X> S+ 0 0 35 -3,-0.5 4,-3.1 -4,-0.4 3,-1.0 0.896 95.9 59.3 -46.3 -49.0 -10.0 -1.1 -0.7 25 105 A L H <> S+ 0 0 77 -3,-1.4 4,-2.4 1,-0.3 -1,-0.3 0.826 104.3 52.4 -51.1 -33.4 -10.3 -4.8 0.4 26 106 A F H << S+ 0 0 25 -3,-1.7 -1,-0.3 -4,-1.0 -2,-0.2 0.826 112.5 44.1 -72.8 -32.6 -10.7 -3.4 4.0 27 107 A N H << S+ 0 0 122 -4,-1.3 -2,-0.2 -3,-1.0 -1,-0.2 0.915 121.9 36.5 -77.6 -46.1 -13.5 -1.1 2.9 28 108 A T H < S+ 0 0 120 -4,-3.1 2,-0.5 -5,-0.2 -2,-0.2 0.907 118.5 53.9 -73.2 -43.5 -15.3 -3.6 0.7 29 109 A S S < S- 0 0 44 -4,-2.4 -1,-0.1 -5,-0.4 0, 0.0 -0.833 70.4-153.6 -98.8 126.0 -14.7 -6.6 3.0 30 110 A K S S+ 0 0 197 -2,-0.5 -1,-0.2 2,-0.0 -2,-0.0 0.974 77.9 72.1 -58.3 -58.8 -15.6 -6.3 6.7 31 111 A S + 0 0 64 1,-0.1 -2,-0.1 2,-0.0 4,-0.0 -0.280 51.3 172.0 -60.6 142.9 -13.0 -8.7 7.9 32 112 A N >> + 0 0 57 2,-0.1 4,-2.6 3,-0.1 3,-1.2 0.585 58.8 87.2-123.5 -28.4 -9.4 -7.5 7.8 33 113 A K H 3> S+ 0 0 175 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.872 94.5 48.3 -40.5 -48.2 -7.6 -10.3 9.7 34 114 A H H 3> S+ 0 0 54 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.845 110.4 52.3 -63.8 -34.2 -7.2 -12.1 6.4 35 115 A L H <> S+ 0 0 0 -3,-1.2 4,-2.3 2,-0.2 -2,-0.2 0.887 106.6 52.8 -69.3 -40.0 -6.0 -8.9 4.7 36 116 A W H X S+ 0 0 14 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.947 109.4 47.7 -60.7 -51.0 -3.3 -8.4 7.3 37 117 A E H X S+ 0 0 109 -4,-2.0 4,-2.2 -5,-0.2 -1,-0.2 0.901 110.2 53.9 -57.4 -43.2 -1.9 -11.9 6.9 38 118 A Q H X S+ 0 0 85 -4,-1.7 4,-2.2 1,-0.2 -1,-0.2 0.949 106.3 51.0 -57.0 -52.9 -1.9 -11.4 3.1 39 119 A I H X S+ 0 0 0 -4,-2.3 4,-2.4 2,-0.2 -1,-0.2 0.926 110.0 50.7 -50.9 -51.4 0.1 -8.2 3.3 40 120 A S H X S+ 0 0 3 -4,-2.0 4,-2.4 1,-0.2 3,-0.4 0.968 107.4 51.0 -51.5 -63.8 2.8 -9.8 5.5 41 121 A S H X S+ 0 0 47 -4,-2.2 4,-1.9 1,-0.3 -1,-0.2 0.884 110.9 50.5 -41.1 -50.5 3.3 -12.8 3.3 42 122 A K H X S+ 0 0 104 -4,-2.2 4,-1.5 1,-0.2 -1,-0.3 0.925 108.8 51.6 -56.1 -48.0 3.8 -10.5 0.3 43 123 A M H >X>S+ 0 0 0 -4,-2.4 5,-1.7 -3,-0.4 4,-1.5 0.952 106.3 52.9 -54.5 -54.8 6.3 -8.4 2.2 44 124 A R H 3<5S+ 0 0 140 -4,-2.4 3,-0.4 1,-0.3 -1,-0.2 0.881 105.4 56.1 -49.0 -43.2 8.4 -11.4 3.1 45 125 A E H 3<5S+ 0 0 158 -4,-1.9 -1,-0.3 -5,-0.3 -2,-0.2 0.875 103.3 54.4 -58.3 -38.9 8.5 -12.3 -0.5 46 126 A K H <<5S- 0 0 120 -4,-1.5 -1,-0.2 -3,-0.9 -2,-0.2 0.828 131.0 -93.8 -65.2 -32.1 10.0 -8.9 -1.4 47 127 A G T <5S+ 0 0 48 -4,-1.5 2,-0.7 -3,-0.4 -3,-0.2 0.380 89.9 118.3 131.3 2.5 12.7 -9.5 1.2 48 128 A F < - 0 0 52 -5,-1.7 2,-1.2 -6,-0.1 -1,-0.2 -0.880 50.2-153.6-104.5 111.7 11.3 -7.9 4.3 49 129 A D + 0 0 138 -2,-0.7 2,-0.4 -5,-0.1 -8,-0.1 -0.699 37.2 144.6 -86.2 96.6 10.9 -10.3 7.2 50 130 A R - 0 0 54 -2,-1.2 -6,-0.2 -10,-0.2 -7,-0.1 -0.997 46.0-120.1-138.4 132.5 8.1 -8.7 9.3 51 131 A S > - 0 0 69 -2,-0.4 4,-1.4 1,-0.1 5,-0.1 -0.164 23.9-119.2 -64.6 161.1 5.3 -10.4 11.3 52 132 A P H > S+ 0 0 53 0, 0.0 4,-1.8 0, 0.0 -1,-0.1 0.867 112.8 53.4 -69.8 -38.3 1.6 -9.7 10.5 53 133 A T H > S+ 0 0 102 1,-0.2 4,-2.3 2,-0.2 5,-0.3 0.852 104.9 56.1 -66.1 -35.3 0.8 -8.3 13.9 54 134 A M H > S+ 0 0 86 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.935 107.7 46.8 -62.4 -48.2 3.7 -5.8 13.6 55 135 A C H X S+ 0 0 0 -4,-1.4 4,-2.4 2,-0.2 -1,-0.2 0.885 110.7 54.5 -61.5 -40.1 2.4 -4.3 10.3 56 136 A T H X S+ 0 0 28 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.971 114.1 37.9 -58.4 -58.1 -1.1 -4.1 11.8 57 137 A D H X S+ 0 0 120 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.917 115.2 55.0 -60.5 -45.3 -0.0 -2.0 14.9 58 138 A K H X S+ 0 0 53 -4,-2.8 4,-1.8 -5,-0.3 -1,-0.2 0.887 107.6 51.5 -55.8 -41.2 2.5 -0.1 12.8 59 139 A W H >X S+ 0 0 20 -4,-2.4 4,-1.7 2,-0.2 3,-0.8 0.984 104.2 53.4 -60.3 -61.8 -0.3 0.9 10.4 60 140 A R H 3X S+ 0 0 126 -4,-2.0 4,-1.7 1,-0.3 3,-0.3 0.854 110.3 50.6 -41.2 -43.7 -2.7 2.2 13.0 61 141 A N H 3X S+ 0 0 95 -4,-1.8 4,-2.3 1,-0.2 -1,-0.3 0.900 104.1 56.8 -64.0 -42.0 0.1 4.4 14.3 62 142 A L H - 0 0 179 -2,-0.4 3,-1.6 1,-0.1 2,-0.2 -0.644 27.2-114.9 -79.4 121.0 6.7 32.4 28.4 84 164 A Y T 3 S- 0 0 215 -2,-0.5 -1,-0.1 1,-0.3 0, 0.0 -0.351 98.1 -2.9 -57.6 119.7 5.4 33.4 31.8 85 165 A K T 3 0 0 179 -2,-0.2 -1,-0.3 1,-0.0 -2,-0.0 0.903 360.0 360.0 63.0 42.7 6.7 36.9 32.6 86 166 A E < 0 0 189 -3,-1.6 -2,-0.1 0, 0.0 -4,-0.0 0.987 360.0 360.0 -54.9 360.0 8.7 36.9 29.3