==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 24-JUL-01 1JNI . COMPND 2 MOLECULE: DIHEME CYTOCHROME C NAPB; . SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; . AUTHOR A.BRIGE,D.LEYS,T.E.MEYER,M.A.CUSANOVICH,J.J.VAN BEEUMEN . 62 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4847.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 28 45.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 17.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 38 A Q 0 0 220 0, 0.0 3,-0.1 0, 0.0 60,-0.1 0.000 360.0 360.0 360.0 149.9 6.6 29.0 -5.2 2 39 A P - 0 0 47 0, 0.0 60,-0.2 0, 0.0 0, 0.0 -0.375 360.0 -82.7 -62.7 149.7 7.9 29.0 -1.6 3 40 A P - 0 0 98 0, 0.0 59,-0.1 0, 0.0 2,-0.1 -0.315 48.5-112.5 -57.0 143.3 9.5 32.3 -0.6 4 41 A M - 0 0 145 57,-0.1 59,-0.2 -3,-0.1 57,-0.1 -0.321 30.1-107.1 -69.7 154.9 13.1 32.7 -1.6 5 42 A V - 0 0 22 57,-2.5 -1,-0.1 1,-0.1 4,-0.1 -0.781 24.6-156.7 -84.8 116.4 15.8 32.8 1.1 6 43 A P S S+ 0 0 126 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.233 72.5 50.4 -84.0 18.2 17.0 36.4 1.4 7 44 A H S S- 0 0 84 0, 0.0 2,-0.1 0, 0.0 -2,-0.1 -0.880 99.0 -74.9-142.1 171.1 20.3 35.4 2.9 8 45 A S - 0 0 77 -2,-0.3 3,-0.1 1,-0.1 0, 0.0 -0.430 27.1-170.4 -70.5 146.5 23.2 33.0 2.1 9 46 A V > + 0 0 35 -2,-0.1 3,-1.7 1,-0.1 -1,-0.1 0.296 57.0 108.1-115.3 5.4 22.7 29.3 2.7 10 47 A A T 3 S+ 0 0 85 1,-0.3 -1,-0.1 3,-0.0 -2,-0.0 0.760 79.1 46.6 -55.3 -33.3 26.4 28.3 2.1 11 48 A N T 3 S+ 0 0 129 -3,-0.1 2,-0.6 1,-0.1 -1,-0.3 0.404 92.2 92.6 -93.1 2.0 27.1 27.6 5.8 12 49 A Y < - 0 0 99 -3,-1.7 2,-0.2 2,-0.0 -1,-0.1 -0.859 56.1-157.4-119.1 113.7 24.1 25.4 6.7 13 50 A Q - 0 0 96 -2,-0.6 7,-2.6 7,-0.0 8,-0.3 -0.577 6.6-172.2 -80.9 139.5 24.0 21.7 6.5 14 51 A V E +A 19 0A 31 -2,-0.2 5,-0.2 5,-0.2 2,-0.2 -0.852 29.0 133.2-133.9 102.7 20.8 19.6 6.3 15 52 A T E > S-A 18 0A 59 3,-2.6 3,-0.5 -2,-0.3 -2,-0.0 -0.598 71.6 -67.9-135.0-174.2 21.3 15.8 6.6 16 53 A K T 3 S+ 0 0 80 1,-0.2 3,-0.0 -2,-0.2 0, 0.0 0.830 131.1 19.0 -54.3 -44.3 19.6 13.0 8.5 17 54 A N T 3 S+ 0 0 157 1,-0.1 2,-0.4 0, 0.0 -1,-0.2 0.308 119.1 63.8-111.1 3.4 20.8 14.1 12.0 18 55 A V E < +A 15 0A 53 -3,-0.5 -3,-2.6 0, 0.0 2,-0.3 -0.999 43.2 166.8-132.5 125.7 21.7 17.8 11.4 19 56 A N E > +A 14 0A 19 -2,-0.4 3,-0.9 -5,-0.2 4,-0.2 -0.790 3.7 177.0-137.7 95.0 19.4 20.7 10.3 20 57 A Q T > S+ 0 0 68 -7,-2.6 3,-1.5 -2,-0.3 4,-0.3 0.772 74.9 70.9 -76.5 -17.2 21.2 24.0 10.8 21 58 A C T >> S+ 0 0 27 -8,-0.3 4,-2.3 1,-0.3 3,-1.5 0.880 92.5 59.7 -59.6 -33.9 18.3 26.0 9.4 22 59 A L H <> S+ 0 0 37 -3,-0.9 4,-1.2 1,-0.3 -1,-0.3 0.594 80.5 82.5 -75.9 -8.0 16.3 25.2 12.5 23 60 A N H <4 S+ 0 0 94 -3,-1.5 -1,-0.3 -4,-0.2 -2,-0.2 0.751 116.3 13.5 -63.9 -21.5 18.9 26.9 14.7 24 61 A C H <4 S+ 0 0 49 -3,-1.5 9,-0.3 -4,-0.3 11,-0.3 0.703 130.2 49.2-117.2 -40.3 17.0 30.1 13.8 25 62 A H H < S+ 0 0 56 -4,-2.3 13,-2.1 12,-0.1 -3,-0.2 0.439 81.5 108.3 -92.3 -1.5 13.7 29.0 12.2 26 63 A S S >X S- 0 0 7 -4,-1.2 4,-1.7 -5,-0.2 3,-1.0 -0.320 83.5-110.6 -66.9 156.6 12.5 26.5 14.7 27 64 A P T 34 S+ 0 0 43 0, 0.0 4,-0.4 0, 0.0 3,-0.1 0.890 118.4 51.6 -51.4 -39.1 9.5 27.5 17.0 28 65 A E T 34 S+ 0 0 154 1,-0.2 4,-0.2 2,-0.1 -3,-0.1 0.741 118.2 33.7 -78.0 -15.4 11.9 27.7 20.0 29 66 A N T <> S+ 0 0 53 -3,-1.0 4,-2.4 -7,-0.2 6,-0.3 0.484 90.9 91.9-112.7 -9.7 14.5 30.0 18.3 30 67 A S H X S+ 0 0 12 -4,-1.7 4,-1.6 1,-0.2 5,-0.3 0.873 87.6 46.8 -61.5 -42.0 12.4 32.3 16.0 31 68 A R H 4 S+ 0 0 93 -4,-0.4 -1,-0.2 1,-0.2 -2,-0.1 0.934 115.6 45.6 -66.5 -41.3 11.8 35.1 18.5 32 69 A L H 4 S+ 0 0 150 1,-0.2 -2,-0.2 -4,-0.2 -1,-0.2 0.908 119.7 38.7 -68.2 -40.5 15.4 35.3 19.6 33 70 A S H < S- 0 0 50 -4,-2.4 -1,-0.2 -9,-0.3 -2,-0.2 0.657 99.7-125.4 -89.0 -14.4 16.9 35.1 16.1 34 71 A G < + 0 0 66 -4,-1.6 2,-0.3 1,-0.3 -3,-0.1 0.409 65.6 135.4 81.2 -3.0 14.4 37.3 14.2 35 72 A A - 0 0 20 -5,-0.3 -1,-0.3 -6,-0.3 -2,-0.2 -0.618 64.2-105.6 -84.5 136.6 13.8 34.5 11.7 36 73 A T - 0 0 118 -2,-0.3 2,-0.1 1,-0.1 -1,-0.1 -0.349 40.4-113.8 -61.5 132.6 10.2 33.7 10.7 37 74 A R - 0 0 136 1,-0.1 2,-0.3 -10,-0.1 -11,-0.2 -0.422 27.8-106.2 -66.4 142.2 9.1 30.5 12.3 38 75 A I - 0 0 30 -13,-2.1 -1,-0.1 -2,-0.1 -8,-0.1 -0.506 46.1-126.4 -64.3 131.6 8.3 27.5 10.1 39 76 A S > - 0 0 48 -2,-0.3 3,-2.4 1,-0.1 4,-0.3 -0.256 24.4 -94.4 -76.2 163.8 4.5 27.3 10.1 40 77 A P G >> S+ 0 0 89 0, 0.0 4,-2.2 0, 0.0 3,-1.4 0.725 118.8 75.2 -52.4 -21.6 2.3 24.3 10.9 41 78 A T G 34 S+ 0 0 56 1,-0.2 7,-0.1 2,-0.2 -3,-0.0 0.795 92.9 54.5 -59.0 -26.4 2.3 23.4 7.2 42 79 A H G <4 S+ 0 0 32 -3,-2.4 12,-2.3 1,-0.1 11,-1.4 0.543 116.2 36.8 -82.2 -11.5 5.9 22.2 7.7 43 80 A F T <4 S+ 0 0 74 -3,-1.4 -2,-0.2 -4,-0.3 -1,-0.1 0.622 93.3 103.4-111.4 -26.4 4.8 19.8 10.6 44 81 A M < - 0 0 68 -4,-2.2 6,-0.2 6,-0.1 9,-0.1 -0.235 62.4-129.7 -66.0 148.2 1.4 18.5 9.4 45 82 A D > - 0 0 81 4,-2.4 3,-1.9 1,-0.0 -1,-0.1 -0.203 46.8 -76.2 -80.4-174.9 0.7 15.1 8.0 46 83 A R T 3 S+ 0 0 104 1,-0.3 -2,-0.1 2,-0.1 -1,-0.0 0.740 132.6 44.4 -55.0 -30.6 -1.3 14.5 4.8 47 84 A D T 3 S- 0 0 151 2,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.279 123.4 -96.4 -99.8 7.6 -4.7 15.2 6.5 48 85 A G S < S+ 0 0 44 -3,-1.9 2,-0.4 1,-0.3 -2,-0.1 0.507 74.7 144.9 95.4 -2.2 -3.6 18.3 8.4 49 86 A K 0 0 58 -5,-0.0 -4,-2.4 -6,-0.0 -1,-0.3 -0.610 360.0 360.0 -83.1 129.2 -2.8 16.7 11.7 50 87 A V 0 0 131 -2,-0.4 -6,-0.1 -6,-0.2 -9,-0.0 -0.892 360.0 360.0-107.9 360.0 0.1 18.2 13.6 51 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 52 93 A P 0 0 61 0, 0.0 -9,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 138.0 9.0 18.8 10.7 53 94 A R + 0 0 77 -11,-1.4 2,-1.2 1,-0.2 3,-0.3 0.738 360.0 64.2 -78.9 -29.5 7.8 16.7 7.7 54 95 A R S S+ 0 0 131 -12,-2.3 -1,-0.2 1,-0.2 3,-0.1 -0.811 73.5 140.0 -89.3 87.7 9.1 19.5 5.4 55 96 A Y + 0 0 54 -2,-1.2 2,-1.8 1,-0.2 -1,-0.2 0.790 43.8 69.8-106.7 -46.6 12.7 18.8 6.5 56 97 A F > - 0 0 95 -3,-0.3 3,-1.8 1,-0.2 4,-0.3 -0.584 66.9-175.5 -83.1 80.4 15.0 19.0 3.6 57 98 A C G >> S+ 0 0 35 -2,-1.8 4,-2.4 1,-0.3 3,-1.2 0.743 72.0 55.6 -47.3 -45.3 14.6 22.8 3.2 58 99 A L G 34 S+ 0 0 86 1,-0.3 -1,-0.3 2,-0.2 5,-0.1 0.457 87.5 76.7 -82.1 2.1 16.7 23.4 0.1 59 100 A Q G <4 S+ 0 0 157 -3,-1.8 -1,-0.3 1,-0.1 -2,-0.2 0.788 118.3 15.4 -70.4 -28.4 14.7 20.9 -2.0 60 101 A C T <4 S+ 0 0 74 -3,-1.2 2,-0.4 -4,-0.3 -2,-0.2 0.726 115.4 70.1-114.3 -40.4 12.0 23.7 -2.2 61 102 A H < - 0 0 42 -4,-2.4 2,-0.4 -60,-0.1 -57,-0.1 -0.743 60.1-160.1 -92.5 137.4 13.6 27.0 -1.1 62 103 A V 0 0 95 -2,-0.4 -57,-2.5 -60,-0.2 -3,-0.0 -0.907 360.0 360.0-112.3 141.2 16.1 28.9 -3.4 63 104 A S 0 0 79 -2,-0.4 -1,-0.1 -59,-0.2 -59,-0.0 0.889 360.0 360.0 -84.3 360.0 18.5 31.6 -2.1