==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID BINDING PROTEIN, PROTEIN FIBRIL 28-DEC-06 2JN5 . COMPND 2 MOLECULE: ALPHA-SYNUCLEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.J.ZHOU,H.Y.HU,D.H.LIN . 12 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1296.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 2 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 171 0, 0.0 2,-0.1 0, 0.0 9,-0.0 0.000 360.0 360.0 360.0-170.0 -5.8 -2.1 -0.6 2 2 A D + 0 0 47 7,-0.1 9,-1.0 2,-0.1 10,-0.9 -0.584 360.0 83.6-151.3 81.1 -2.6 -0.1 -0.3 3 3 A V + 0 0 81 7,-0.2 -1,-0.0 -2,-0.1 0, 0.0 0.349 69.7 78.0-152.8 -17.6 0.4 -2.0 1.1 4 4 A F S S+ 0 0 144 2,-0.0 2,-0.2 3,-0.0 -2,-0.1 0.980 91.5 54.5 -64.1 -58.6 1.8 -3.9 -1.9 5 5 A M S S- 0 0 129 1,-0.1 3,-0.3 2,-0.0 4,-0.2 -0.501 80.9-134.1 -78.7 146.9 3.6 -0.9 -3.4 6 6 A K S S+ 0 0 182 1,-0.3 2,-0.1 -2,-0.2 -1,-0.1 0.402 98.1 31.9 -80.2 2.9 6.0 1.2 -1.3 7 7 A G S S+ 0 0 65 0, 0.0 -1,-0.3 0, 0.0 -4,-0.1 -0.577 83.8 87.8-163.7 94.4 4.4 4.3 -2.6 8 8 A L S S- 0 0 78 -3,-0.3 -2,-0.1 -2,-0.1 -5,-0.0 0.377 105.9 -46.3-153.9 -41.4 0.8 4.6 -3.5 9 9 A S - 0 0 77 -4,-0.2 -7,-0.1 -7,-0.1 -6,-0.1 0.241 55.4-144.2-172.6 -35.2 -1.4 5.6 -0.5 10 10 A K + 0 0 102 -5,-0.2 -7,-0.2 1,-0.1 -4,-0.0 0.971 33.4 161.1 48.8 78.7 -0.4 3.4 2.5 11 11 A A 0 0 59 -9,-1.0 -8,-0.1 1,-0.0 -1,-0.1 0.483 360.0 360.0-103.2 -7.5 -3.8 3.0 4.2 12 12 A K 0 0 161 -10,-0.9 -1,-0.0 0, 0.0 -3,-0.0 -0.619 360.0 360.0 -76.5 360.0 -2.8 -0.0 6.3