==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 12-JAN-07 2JNE . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YFGJ; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR T.A.RAMELOT,J.R.CORT,A.A.YEE,A.SEMESI,J.A LUKIN, . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5582.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 70.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 39.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 22.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 186 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -30.0 65.2 -6.8 13.8 2 2 A E - 0 0 138 9,-0.1 2,-0.4 2,-0.0 11,-0.1 -0.058 360.0 -45.0 63.5-167.2 62.8 -5.1 11.3 3 3 A L - 0 0 100 9,-0.4 9,-2.3 11,-0.0 2,-0.3 -0.792 54.4-151.7-101.0 143.3 63.9 -2.4 8.9 4 4 A H B -A 11 0A 110 -2,-0.4 7,-0.2 7,-0.2 5,-0.1 -0.797 23.4-100.0-113.5 157.1 66.1 0.6 9.9 5 5 A C - 0 0 6 5,-1.4 4,-0.1 3,-0.4 -1,-0.0 -0.469 17.0-138.4 -74.5 142.0 66.4 4.1 8.6 6 6 A P S S+ 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.023 101.7 15.2 -85.7 31.1 69.2 5.0 6.2 7 7 A Q S S+ 0 0 165 3,-0.1 2,-1.6 0, 0.0 -2,-0.0 0.074 131.4 38.5-161.1 -75.2 69.6 8.3 8.0 8 8 A C S S- 0 0 44 2,-0.1 -3,-0.4 -4,-0.0 2,-0.2 -0.517 92.3-148.4 -89.1 63.0 67.9 8.5 11.4 9 9 A Q + 0 0 148 -2,-1.6 2,-0.3 -5,-0.1 -5,-0.1 -0.144 50.4 99.9 -46.8 101.5 68.9 4.9 12.0 10 10 A H S S- 0 0 102 -2,-0.2 -5,-1.4 -7,-0.0 2,-0.1 -0.894 78.2 -46.7-162.2-172.1 66.2 3.3 14.2 11 11 A V B -A 4 0A 33 11,-0.3 11,-0.8 -2,-0.3 2,-0.6 -0.434 46.3-138.7 -72.6 137.4 63.2 1.0 13.8 12 12 A L E -B 21 0B 23 -9,-2.3 2,-1.2 9,-0.2 -9,-0.4 -0.883 9.2-145.6 -94.9 117.1 60.7 1.7 11.0 13 13 A D E -B 20 0B 69 7,-2.7 7,-2.4 -2,-0.6 2,-0.5 -0.711 28.0-168.0 -83.8 97.5 57.1 1.3 12.2 14 14 A Q E +B 19 0B 90 -2,-1.2 5,-0.3 5,-0.3 2,-0.2 -0.777 20.8 149.5-102.3 130.2 55.6 -0.0 9.0 15 15 A D E > -B 18 0B 114 3,-3.5 2,-0.8 -2,-0.5 3,-0.7 -0.436 64.5 -22.4-128.1-153.7 51.9 -0.4 8.3 16 16 A N T 3 S- 0 0 84 1,-0.3 14,-0.1 -2,-0.2 3,-0.1 -0.431 126.7 -35.0 -66.3 101.8 49.8 -0.2 5.1 17 17 A G T 3 S+ 0 0 12 -2,-0.8 13,-2.5 1,-0.1 2,-0.4 0.603 124.0 98.3 65.0 11.4 52.0 2.0 2.7 18 18 A H E < -BC 15 29B 67 -3,-0.7 -3,-3.5 11,-0.2 2,-0.4 -0.990 48.8-172.6-136.9 139.6 53.2 4.0 5.7 19 19 A A E -BC 14 28B 1 9,-2.7 9,-1.5 -2,-0.4 2,-0.5 -0.890 6.0-170.6-135.4 102.8 56.3 3.9 7.8 20 20 A R E -BC 13 27B 135 -7,-2.4 -7,-2.7 -2,-0.4 2,-1.2 -0.792 30.2-118.8 -92.8 133.4 56.5 6.1 10.9 21 21 A C E >> -B 12 0B 4 5,-2.6 4,-3.2 -2,-0.5 3,-0.6 -0.593 27.7-156.3 -72.6 97.9 59.9 6.2 12.6 22 22 A R T 34 S+ 0 0 135 -2,-1.2 -11,-0.3 -11,-0.8 4,-0.1 -0.561 83.3 13.9 -71.0 139.1 59.3 4.9 16.1 23 23 A S T 34 S+ 0 0 103 -2,-0.2 -1,-0.2 1,-0.1 -2,-0.1 0.218 127.4 63.8 74.2 -15.9 62.0 6.2 18.5 24 24 A C T <4 S- 0 0 46 -3,-0.6 -2,-0.2 -13,-0.3 -1,-0.1 0.839 89.8-142.5 -93.7 -53.9 62.8 8.8 15.8 25 25 A G < + 0 0 54 -4,-3.2 -3,-0.1 1,-0.4 -2,-0.0 0.058 55.8 130.8 108.3 -20.9 59.6 10.8 15.6 26 26 A E - 0 0 102 -18,-0.1 -5,-2.6 -6,-0.1 2,-0.5 -0.192 50.3-139.2 -66.4 154.1 59.9 11.1 11.8 27 27 A F E -C 20 0B 100 -7,-0.2 2,-0.4 -3,-0.1 -7,-0.2 -0.975 21.2-179.8-119.6 126.0 57.0 10.3 9.4 28 28 A I E -C 19 0B 34 -9,-1.5 -9,-2.7 -2,-0.5 2,-0.3 -0.974 11.9-158.9-127.2 138.5 57.6 8.5 6.1 29 29 A E E -C 18 0B 98 -2,-0.4 42,-1.8 -11,-0.2 2,-0.3 -0.888 13.6-151.5-112.4 147.8 55.2 7.5 3.4 30 30 A M E -D 70 0C 37 -13,-2.5 2,-0.3 -2,-0.3 40,-0.2 -0.907 11.1-122.8-125.5 149.7 55.9 4.8 0.9 31 31 A K E -D 69 0C 111 38,-2.5 38,-1.6 -2,-0.3 2,-0.9 -0.700 15.5-135.6 -93.1 139.6 54.8 4.1 -2.7 32 32 A A E +D 68 0C 18 -2,-0.3 9,-2.6 36,-0.2 2,-0.3 -0.817 34.0 176.8 -94.0 101.3 53.0 0.9 -3.7 33 33 A L E -DE 67 40C 19 34,-2.7 34,-2.8 -2,-0.9 21,-0.1 -0.812 35.1-115.7-107.4 147.0 54.7 -0.2 -7.0 34 34 A C >> - 0 0 1 5,-2.3 4,-4.0 -2,-0.3 3,-2.4 -0.713 24.6-138.1 -77.1 121.9 54.1 -3.3 -9.1 35 35 A P T 34 S+ 0 0 50 0, 0.0 -1,-0.1 0, 0.0 31,-0.1 0.845 103.4 45.8 -49.7 -40.5 57.3 -5.3 -9.0 36 36 A D T 34 S+ 0 0 93 1,-0.1 -2,-0.0 3,-0.0 -3,-0.0 0.403 126.4 30.1 -87.0 2.6 57.1 -6.2 -12.7 37 37 A C T <4 S- 0 0 29 -3,-2.4 -1,-0.1 2,-0.2 -4,-0.0 0.662 78.9-147.6-123.7 -42.6 56.3 -2.6 -13.6 38 38 A H < + 0 0 115 -4,-4.0 -2,-0.0 1,-0.4 -5,-0.0 0.600 65.9 117.9 67.6 14.4 57.9 -0.2 -11.1 39 39 A Q S S- 0 0 100 -5,-0.4 -5,-2.3 1,-0.1 -1,-0.4 -0.779 76.4 -87.4-104.6 154.2 54.9 1.9 -11.8 40 40 A P B -E 33 0C 84 0, 0.0 15,-0.4 0, 0.0 -7,-0.2 -0.222 40.1-120.7 -62.4 146.8 52.3 2.9 -9.0 41 41 A L - 0 0 13 -9,-2.6 2,-0.7 13,-0.1 13,-0.2 -0.597 27.1-107.3 -85.1 150.7 49.4 0.6 -8.3 42 42 A Q E -F 53 0D 83 11,-3.5 11,-2.5 -2,-0.2 2,-1.1 -0.705 30.2-137.3 -80.9 112.8 45.8 1.8 -8.6 43 43 A V E -F 52 0D 72 -2,-0.7 2,-0.9 9,-0.2 9,-0.2 -0.612 16.3-160.0 -75.6 100.3 44.4 2.2 -5.1 44 44 A L E -F 51 0D 63 7,-3.3 7,-2.4 -2,-1.1 2,-0.7 -0.740 7.9-160.9 -84.9 105.8 40.9 0.7 -5.3 45 45 A K E +F 50 0D 173 -2,-0.9 5,-0.2 5,-0.2 3,-0.1 -0.801 25.6 166.7 -97.3 113.9 39.1 2.1 -2.3 46 46 A A E > -F 49 0D 66 3,-2.9 2,-2.4 -2,-0.7 3,-0.6 -0.088 56.4-114.0-109.6 31.3 35.9 0.3 -1.3 47 47 A C T 3 S+ 0 0 137 1,-0.3 -1,-0.1 2,-0.1 3,-0.0 -0.454 109.5 30.2 71.6 -70.8 35.8 2.2 2.0 48 48 A G T 3 S+ 0 0 75 -2,-2.4 2,-0.3 1,-0.1 -1,-0.3 0.908 125.6 42.2 -83.3 -45.8 36.4 -0.8 4.2 49 49 A A E < -F 46 0D 58 -3,-0.6 -3,-2.9 2,-0.0 2,-0.4 -0.776 66.5-160.6-104.0 147.8 38.6 -2.8 1.8 50 50 A V E -F 45 0D 62 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.987 6.2-163.5-129.7 122.0 41.3 -1.5 -0.4 51 51 A D E -F 44 0D 74 -7,-2.4 -7,-3.3 -2,-0.4 2,-0.7 -0.766 13.6-140.3-103.0 149.8 42.6 -3.4 -3.5 52 52 A Y E -FG 43 61D 29 9,-0.5 9,-3.4 -2,-0.3 2,-0.4 -0.918 22.5-167.2-111.8 107.1 45.9 -2.7 -5.3 53 53 A F E -FG 42 60D 75 -11,-2.5 -11,-3.5 -2,-0.7 2,-1.4 -0.801 23.6-126.9-101.3 131.9 45.4 -3.0 -9.0 54 54 A C E >>> - G 0 59D 1 5,-3.0 3,-1.7 -2,-0.4 2,-1.4 -0.619 22.0-154.7 -75.5 92.7 48.2 -3.2 -11.5 55 55 A Q T 345S+ 0 0 120 -2,-1.4 -21,-0.1 -15,-0.4 -1,-0.1 -0.598 81.5 56.8 -71.7 94.6 47.3 -0.4 -13.9 56 56 A H T 345S- 0 0 137 -2,-1.4 -1,-0.2 3,-0.0 -2,-0.0 0.021 124.4 -73.0 169.5 -34.1 49.1 -1.8 -16.9 57 57 A G T <45S+ 0 0 60 -3,-1.7 -2,-0.1 2,-0.2 -4,-0.0 0.734 97.0 102.5 120.1 58.1 47.7 -5.3 -17.4 58 58 A H T <5S- 0 0 108 -4,-0.9 2,-0.3 1,-0.3 -3,-0.1 0.524 73.4-121.3-131.8 -27.2 48.8 -7.8 -14.8 59 59 A G E < -G 54 0D 24 -5,-0.6 -5,-3.0 2,-0.0 2,-0.3 -0.866 54.6 -15.8 120.0-154.1 45.9 -8.1 -12.4 60 60 A L E -G 53 0D 117 -2,-0.3 2,-0.4 -7,-0.2 -7,-0.2 -0.725 53.5-159.3 -95.4 139.9 45.5 -7.5 -8.7 61 61 A I E -G 52 0D 18 -9,-3.4 -9,-0.5 -2,-0.3 2,-0.1 -0.971 10.5-138.9-120.8 129.0 48.5 -7.3 -6.3 62 62 A S >> - 0 0 69 -2,-0.4 3,-2.1 1,-0.1 4,-1.8 -0.463 26.6-112.7 -81.6 159.9 48.3 -7.8 -2.6 63 63 A K T 34 S+ 0 0 108 1,-0.3 -46,-0.1 2,-0.2 -1,-0.1 0.523 118.2 61.0 -71.8 -3.7 50.2 -5.7 -0.1 64 64 A K T 34 S+ 0 0 187 1,-0.1 -1,-0.3 3,-0.0 -2,-0.0 0.392 112.6 36.0 -97.6 0.1 52.4 -8.7 0.7 65 65 A R T <4 S+ 0 0 178 -3,-2.1 -2,-0.2 2,-0.0 -1,-0.1 0.553 95.8 102.3-120.8 -22.1 53.5 -8.9 -2.9 66 66 A V S < S- 0 0 15 -4,-1.8 2,-0.7 -32,-0.1 -32,-0.2 -0.184 71.9-123.0 -64.1 154.2 53.8 -5.2 -3.7 67 67 A E E -D 33 0C 76 -34,-2.8 -34,-2.7 2,-0.0 2,-0.6 -0.911 23.2-156.3-103.3 113.1 57.1 -3.3 -3.8 68 68 A F E -D 32 0C 65 -2,-0.7 2,-0.3 -36,-0.2 -36,-0.2 -0.806 14.2-176.7 -93.0 121.3 57.2 -0.4 -1.4 69 69 A V E -D 31 0C 45 -38,-1.6 -38,-2.5 -2,-0.6 2,-0.4 -0.751 37.3 -86.7-113.0 163.4 59.7 2.3 -2.2 70 70 A L E D 30 0C 114 -2,-0.3 -40,-0.2 -40,-0.2 -1,-0.0 -0.533 360.0 360.0 -72.2 122.8 60.6 5.5 -0.3 71 71 A A 0 0 84 -42,-1.8 -41,-0.2 -2,-0.4 -1,-0.2 0.855 360.0 360.0 -95.0 360.0 58.3 8.4 -1.3