==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 23-JAN-07 2JNG . COMPND 2 MOLECULE: CULLIN-7; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.LEMAK,L.KAUSTOV,J.LUKIN,S.DUAN,C.H.ARROWSMITH,NORTHEAST . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5139.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 72.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 31.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A M > 0 0 118 0, 0.0 3,-1.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-176.9 9.9 2.6 -15.8 2 5 A R G > + 0 0 124 1,-0.3 3,-0.7 2,-0.1 6,-0.1 0.785 360.0 72.9 -58.2 -26.7 7.0 2.3 -13.4 3 6 A S G 3 + 0 0 31 1,-0.2 -1,-0.3 65,-0.2 7,-0.1 0.254 62.7 123.4 -68.4 14.6 7.4 6.2 -13.0 4 7 A E G < + 0 0 175 -3,-1.4 -1,-0.2 4,-0.1 -2,-0.1 0.661 38.7 114.6 -53.0 -20.7 5.8 6.1 -16.5 5 8 A F S < S- 0 0 90 -3,-0.7 -2,-0.0 3,-0.1 6,-0.0 -0.063 89.1 -96.1 -53.1 159.0 3.0 8.4 -15.1 6 9 A A S S+ 0 0 112 1,-0.3 -1,-0.1 2,-0.1 -3,-0.0 0.852 121.0 5.3 -50.8 -45.9 2.8 11.9 -16.6 7 10 A S S S- 0 0 98 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.512 98.1-123.7-113.0 -11.2 4.8 13.4 -13.7 8 11 A G S > S+ 0 0 5 -6,-0.1 4,-1.3 3,-0.0 3,-0.4 0.413 83.2 114.9 82.2 -3.1 5.7 10.2 -12.0 9 12 A N H > + 0 0 115 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.803 68.0 61.6 -69.7 -28.4 4.1 11.5 -8.8 10 13 A T H > S+ 0 0 69 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.832 100.4 54.7 -65.3 -31.1 1.4 8.9 -9.0 11 14 A Y H > S+ 0 0 2 -3,-0.4 4,-2.8 2,-0.2 5,-0.3 0.922 105.2 52.1 -65.9 -44.7 4.2 6.3 -8.7 12 15 A A H X S+ 0 0 22 -4,-1.3 4,-1.8 1,-0.2 -2,-0.2 0.846 112.4 47.1 -56.2 -35.8 5.3 8.1 -5.5 13 16 A L H X S+ 0 0 98 -4,-1.6 4,-1.6 2,-0.2 -2,-0.2 0.929 111.2 49.9 -72.7 -46.4 1.7 7.8 -4.4 14 17 A Y H X S+ 0 0 154 -4,-2.8 4,-1.2 1,-0.2 3,-0.3 0.942 115.8 41.4 -57.3 -55.2 1.3 4.1 -5.3 15 18 A V H X S+ 0 0 5 -4,-2.8 4,-3.6 1,-0.2 3,-0.3 0.915 108.4 60.7 -61.9 -44.3 4.5 3.0 -3.6 16 19 A R H < S+ 0 0 73 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.851 102.1 53.4 -54.4 -37.4 3.9 5.2 -0.5 17 20 A D H < S+ 0 0 100 -4,-1.6 -1,-0.2 -3,-0.3 -2,-0.2 0.918 119.6 32.0 -65.3 -42.3 0.6 3.4 0.3 18 21 A T H < S+ 0 0 37 -4,-1.2 2,-1.6 -3,-0.3 -2,-0.2 0.799 99.2 88.9 -88.8 -29.3 2.3 -0.0 0.2 19 22 A L < + 0 0 7 -4,-3.6 -1,-0.1 -5,-0.2 6,-0.0 -0.548 56.3 160.4 -74.6 89.3 5.7 1.1 1.6 20 23 A Q > - 0 0 101 -2,-1.6 3,-2.6 1,-0.1 22,-0.2 -0.753 56.2 -72.0-102.8 157.4 5.3 0.8 5.3 21 24 A P T 3 S+ 0 0 89 0, 0.0 22,-0.2 0, 0.0 3,-0.1 -0.297 125.9 38.1 -48.1 113.6 8.1 0.6 7.9 22 25 A G T 3 S+ 0 0 30 20,-2.2 2,-0.5 1,-0.4 54,-0.3 0.183 81.7 123.5 122.1 -15.5 9.4 -2.9 7.4 23 26 A M < - 0 0 27 -3,-2.6 19,-2.7 19,-0.3 -1,-0.4 -0.685 59.9-131.2 -77.2 125.8 9.1 -3.1 3.6 24 27 A R E -A 41 0A 104 -2,-0.5 49,-2.8 49,-0.4 2,-0.3 -0.472 26.3-163.5 -76.8 149.4 12.5 -3.9 2.0 25 28 A V E -AB 40 72A 1 15,-3.5 15,-3.1 47,-0.2 2,-0.4 -0.918 14.0-147.6-134.8 155.8 13.7 -1.7 -0.8 26 29 A R E -AB 39 71A 94 45,-3.0 45,-3.2 -2,-0.3 2,-0.8 -0.988 26.0-119.9-123.8 137.3 16.3 -1.7 -3.6 27 30 A M E + B 0 70A 1 11,-3.9 10,-3.0 -2,-0.4 11,-0.2 -0.690 31.5 178.3 -78.0 110.3 18.0 1.3 -5.0 28 31 A L + 0 0 73 41,-2.0 2,-0.3 -2,-0.8 -1,-0.2 0.721 64.0 44.3 -89.2 -25.4 17.0 1.3 -8.7 29 32 A D S S- 0 0 84 40,-0.8 2,-0.5 6,-0.1 8,-0.1 -0.855 84.2-117.6-120.3 154.5 18.9 4.5 -9.7 30 33 A D + 0 0 93 -2,-0.3 2,-0.3 5,-0.1 5,-0.2 -0.827 43.1 162.5 -96.1 128.0 22.4 5.7 -8.8 31 34 A Y B > -E 34 0B 82 3,-1.5 3,-1.8 -2,-0.5 2,-0.1 -0.926 48.8 -54.4-156.6 116.6 22.4 8.9 -6.8 32 35 A E T 3 S- 0 0 141 -2,-0.3 -1,-0.0 1,-0.3 0, 0.0 -0.280 121.7 -4.7 60.9-124.7 25.0 10.7 -4.6 33 36 A E T 3 S+ 0 0 131 -2,-0.1 -1,-0.3 -3,-0.1 2,-0.3 0.750 125.0 78.8 -70.6 -24.7 26.4 8.5 -1.8 34 37 A I B < S-E 31 0B 2 -3,-1.8 -3,-1.5 4,-0.0 2,-0.3 -0.619 70.1-152.0 -91.6 145.7 24.0 5.7 -2.8 35 38 A S > - 0 0 64 -2,-0.3 3,-2.0 -5,-0.2 -8,-0.2 -0.868 27.9 -92.4-120.3 149.7 24.7 3.5 -5.7 36 39 A A T 3 S+ 0 0 59 -2,-0.3 -8,-0.2 1,-0.3 -6,-0.1 -0.377 112.8 33.4 -60.0 129.8 22.4 1.5 -8.1 37 40 A G T 3 S+ 0 0 29 -10,-3.0 -1,-0.3 1,-0.4 -9,-0.1 0.233 82.3 137.9 105.4 -12.5 21.9 -2.0 -6.7 38 41 A D < - 0 0 7 -3,-2.0 -11,-3.9 -11,-0.2 -1,-0.4 -0.376 39.4-153.0 -62.9 143.1 22.1 -1.0 -3.1 39 42 A E E +A 26 0A 88 -13,-0.3 18,-2.2 -3,-0.1 19,-1.0 -0.944 25.9 143.0-122.7 147.0 19.4 -2.8 -1.0 40 43 A G E -AC 25 56A 6 -15,-3.1 -15,-3.5 -2,-0.4 2,-0.3 -0.866 41.0 -89.8-161.7-171.2 17.9 -1.5 2.2 41 44 A E E -AC 24 55A 49 14,-2.4 14,-2.5 -17,-0.3 2,-0.7 -0.913 30.6-117.8-123.1 148.8 14.8 -1.3 4.4 42 45 A F E + C 0 54A 2 -19,-2.7 -20,-2.2 -2,-0.3 -19,-0.3 -0.741 35.3 167.6 -86.9 113.8 12.0 1.3 4.6 43 46 A R E - 0 0 130 10,-1.5 2,-0.3 -2,-0.7 -1,-0.2 0.894 60.3 -36.4 -91.1 -50.5 12.0 2.9 8.1 44 47 A Q E - C 0 53A 111 9,-1.9 9,-2.1 -24,-0.1 -1,-0.4 -0.977 52.6-150.3-167.2 165.9 9.7 5.9 7.6 45 48 A S E - C 0 52A 33 -2,-0.3 2,-0.8 7,-0.2 7,-0.2 -0.911 30.6-105.2-140.4 167.7 8.7 8.6 5.1 46 49 A N > - 0 0 75 5,-1.7 2,-2.8 3,-0.3 3,-1.3 -0.885 40.3-137.6 -95.1 106.2 7.4 12.1 4.9 47 50 A N T 3 S+ 0 0 122 -2,-0.8 5,-0.1 1,-0.3 -1,-0.0 -0.331 88.9 23.1 -74.0 65.8 3.8 11.5 4.0 48 51 A G T 3 S+ 0 0 75 -2,-2.8 -1,-0.3 1,-0.6 -35,-0.0 0.169 111.8 63.7 170.2 -18.3 3.3 14.2 1.4 49 52 A V S < S- 0 0 77 -3,-1.3 -1,-0.6 2,-0.2 -3,-0.3 -0.817 85.9-105.3-122.2 160.9 6.7 15.1 -0.0 50 53 A P S S+ 0 0 67 0, 0.0 17,-0.5 0, 0.0 15,-0.1 0.819 84.9 103.2 -52.6 -41.2 9.4 13.2 -2.0 51 54 A P E + D 0 66A 41 0, 0.0 -5,-1.7 0, 0.0 2,-0.4 -0.240 48.2 179.5 -54.8 124.8 12.0 12.7 1.0 52 55 A V E -CD 45 65A 0 13,-0.9 13,-2.4 -7,-0.2 2,-0.8 -0.990 27.0-129.8-129.1 137.6 11.8 9.1 2.4 53 56 A Q E +CD 44 64A 36 -9,-2.1 -9,-1.9 -2,-0.4 -10,-1.5 -0.763 38.1 167.1 -92.5 107.2 13.9 7.8 5.2 54 57 A V E -CD 42 63A 0 9,-2.8 9,-3.2 -2,-0.8 2,-0.6 -0.943 31.7-138.8-124.6 139.7 15.6 4.5 4.2 55 58 A F E -CD 41 62A 65 -14,-2.5 -14,-2.4 -2,-0.4 2,-0.6 -0.883 19.5-147.6 -97.2 118.5 18.3 2.5 5.7 56 59 A W E >> -CD 40 61A 0 5,-2.5 4,-2.6 -2,-0.6 5,-0.7 -0.778 6.5-162.4 -94.7 122.7 20.7 1.1 3.1 57 60 A E T 45S+ 0 0 129 -18,-2.2 -17,-0.2 -2,-0.6 -1,-0.2 0.922 83.8 49.9 -70.2 -49.6 22.2 -2.2 4.1 58 61 A S T 45S+ 0 0 91 -19,-1.0 -1,-0.2 1,-0.2 -18,-0.1 0.862 124.7 30.9 -66.1 -34.8 25.3 -2.4 1.8 59 62 A T T 45S- 0 0 63 -20,-0.2 -2,-0.2 2,-0.2 -1,-0.2 0.914 97.5-138.0 -83.3 -50.5 26.5 1.0 2.7 60 63 A G T <5 + 0 0 36 -4,-2.6 2,-0.4 1,-0.4 -3,-0.2 0.659 61.0 120.4 97.5 21.8 25.1 1.1 6.3 61 64 A R E < -D 56 0A 160 -5,-0.7 -5,-2.5 2,-0.0 2,-0.4 -0.924 61.5-130.2-119.8 141.0 23.9 4.6 6.1 62 65 A T E +D 55 0A 71 -2,-0.4 2,-0.3 -7,-0.3 -7,-0.3 -0.777 37.0 178.0 -85.8 137.1 20.4 6.0 6.5 63 66 A Y E -D 54 0A 40 -9,-3.2 -9,-2.8 -2,-0.4 2,-0.8 -0.980 36.5-120.7-143.1 146.3 19.5 8.3 3.7 64 67 A W E +D 53 0A 150 -2,-0.3 -11,-0.2 -11,-0.2 -19,-0.1 -0.832 46.7 176.7 -89.0 113.9 16.5 10.4 2.5 65 68 A V E -D 52 0A 0 -13,-2.4 -13,-0.9 -2,-0.8 2,-0.4 0.009 27.6 -97.9-104.2-155.8 15.8 9.0 -1.0 66 69 A H E > -D 51 0A 60 -15,-0.2 3,-1.7 1,-0.1 4,-0.2 -0.997 16.6-132.4-138.3 134.0 13.2 9.6 -3.7 67 70 A W G > S+ 0 0 14 -17,-0.5 3,-1.8 -2,-0.4 -1,-0.1 0.890 104.7 56.5 -52.2 -45.4 10.0 7.6 -4.4 68 71 A H G 3 S+ 0 0 86 1,-0.3 -1,-0.3 -3,-0.1 -65,-0.2 0.597 107.7 48.6 -69.0 -11.4 10.6 7.4 -8.2 69 72 A M G < S+ 0 0 8 -3,-1.7 -41,-2.0 -41,-0.0 -40,-0.8 0.265 88.7 105.4-112.1 13.1 14.0 5.7 -7.6 70 73 A L E < -B 27 0A 5 -3,-1.8 2,-0.5 -4,-0.2 -43,-0.2 -0.810 54.1-156.8 -99.8 128.3 12.9 3.1 -5.2 71 74 A E E -B 26 0A 36 -45,-3.2 -45,-3.0 -2,-0.5 2,-0.4 -0.892 23.1-128.3-100.0 125.7 12.4 -0.6 -6.1 72 75 A I E +B 25 0A 47 -2,-0.5 -47,-0.2 -47,-0.2 -48,-0.0 -0.609 38.8 160.8 -83.1 127.7 10.0 -2.4 -3.9 73 76 A L + 0 0 62 -49,-2.8 -49,-0.4 -2,-0.4 -48,-0.2 -0.099 36.2 139.8-127.1 31.1 11.2 -5.7 -2.3 74 77 A G + 0 0 16 -51,-0.2 -51,-0.1 1,-0.2 -55,-0.1 0.104 36.3 61.6 -73.3-175.9 8.6 -5.6 0.4 75 78 A F + 0 0 156 1,-0.1 -1,-0.2 2,-0.0 -52,-0.1 0.785 59.1 147.8 65.0 30.1 6.5 -8.4 1.9 76 79 A E 0 0 72 -54,-0.3 -2,-0.1 1,-0.3 -53,-0.1 0.752 360.0 360.0 -66.1 -24.9 9.7 -10.0 3.0 77 80 A E 0 0 213 -55,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.667 360.0 360.0 -81.6 360.0 7.9 -11.4 6.0