==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 17-FEB-07 2JO0 . COMPND 2 MOLECULE: GAG-POL POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR L.A.ALCARAZ,M.DEL ALAMO,F.N.BARRERA,M.G.MATEU,J.L.NEIRA . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6246.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 51.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 24.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 200 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -81.0 -1.8 -4.2 -3.5 2 2 A S + 0 0 112 1,-0.2 2,-2.0 3,-0.0 0, 0.0 0.919 360.0 53.1 -85.6 -49.5 1.7 -2.8 -2.4 3 3 A P S S+ 0 0 114 0, 0.0 -1,-0.2 0, 0.0 2,-0.2 -0.582 94.3 102.4 -77.7 68.0 1.0 -2.1 1.3 4 4 A T + 0 0 49 -2,-2.0 2,-0.3 -3,-0.2 3,-0.1 -0.685 42.1 157.2-161.5 101.1 -0.1 -5.8 1.5 5 5 A S >> - 0 0 49 -2,-0.2 4,-2.4 1,-0.1 3,-1.8 -0.891 51.5-106.6-127.6 155.0 2.1 -8.5 2.9 6 6 A I H >> S+ 0 0 14 -2,-0.3 4,-0.8 1,-0.3 3,-0.7 0.940 117.8 53.9 -44.7 -63.4 1.4 -12.0 4.4 7 7 A L H 34 S+ 0 0 122 1,-0.3 -1,-0.3 2,-0.2 0, 0.0 0.472 115.7 41.3 -63.3 3.3 2.1 -10.9 8.1 8 8 A D H <4 S+ 0 0 89 -3,-1.8 -1,-0.3 2,-0.0 -2,-0.2 0.631 119.6 41.9-116.3 -24.7 -0.4 -8.0 7.7 9 9 A I H << S+ 0 0 54 -4,-2.4 2,-0.4 -3,-0.7 3,-0.3 0.247 82.1 119.5 -94.5 8.7 -3.1 -10.1 5.7 10 10 A R < + 0 0 164 -4,-0.8 -1,-0.2 -5,-0.2 -3,-0.1 0.194 28.4 158.2 -65.9 9.4 -2.4 -13.0 8.1 11 11 A Q S S- 0 0 185 -2,-0.4 -1,-0.2 1,-0.2 -4,-0.0 0.486 76.6 -73.7 -5.3 -63.1 -6.1 -13.0 9.4 12 12 A G - 0 0 42 -3,-0.3 2,-2.5 0, 0.0 -1,-0.2 0.278 56.2-169.2 161.7 56.9 -5.6 -16.7 10.5 13 13 A P + 0 0 15 0, 0.0 7,-0.1 0, 0.0 -2,-0.1 -0.048 33.6 140.4 -61.7 33.4 -5.6 -18.9 7.3 14 14 A K S S+ 0 0 116 -2,-2.5 3,-0.1 1,-0.2 50,-0.0 0.704 79.0 12.6 -43.4 -34.3 -5.9 -22.3 9.0 15 15 A E S S+ 0 0 90 -3,-0.2 2,-1.9 1,-0.1 -1,-0.2 0.638 95.6 86.4-131.7 -19.9 -8.3 -23.9 6.4 16 16 A P > + 0 0 30 0, 0.0 4,-1.7 0, 0.0 5,-0.5 -0.332 59.0 169.5 -85.4 55.6 -8.8 -22.0 3.0 17 17 A F H >> + 0 0 2 -2,-1.9 4,-2.9 1,-0.2 3,-0.6 0.837 66.5 20.9 -41.7 -72.2 -5.7 -23.8 1.6 18 18 A R H 3> S+ 0 0 135 1,-0.2 4,-1.6 2,-0.2 5,-0.3 0.911 119.9 61.7 -68.0 -39.0 -5.7 -23.1 -2.2 19 19 A D H 34 S+ 0 0 85 1,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.710 123.4 20.2 -59.5 -26.4 -7.9 -19.9 -2.0 20 20 A Y H S+ 0 0 164 -5,-0.3 4,-0.8 2,-0.2 -2,-0.2 0.897 114.6 51.0 -64.6 -45.4 -1.9 -15.3 -2.4 24 24 A F H >X S+ 0 0 0 -4,-2.8 4,-2.6 2,-0.2 3,-1.4 0.974 114.7 39.2 -61.2 -60.4 0.4 -16.2 0.5 25 25 A Y H 3X S+ 0 0 5 -4,-2.7 4,-2.5 1,-0.3 -1,-0.2 0.888 105.9 68.7 -64.9 -34.8 3.3 -17.6 -1.4 26 26 A K H 3< S+ 0 0 135 -4,-2.0 -1,-0.3 -5,-0.4 -2,-0.2 0.724 117.6 23.0 -51.4 -30.6 2.9 -14.8 -4.1 27 27 A T H << S+ 0 0 32 -3,-1.4 3,-0.4 -4,-0.8 -2,-0.2 0.835 122.0 54.6 -97.7 -52.0 4.0 -12.2 -1.5 28 28 A L H >< S+ 0 0 7 -4,-2.6 3,-1.9 1,-0.2 2,-1.6 0.725 77.8 103.4 -54.7 -33.5 6.1 -14.4 0.9 29 29 A R T 3< + 0 0 133 -4,-2.5 4,-0.5 1,-0.3 -1,-0.2 0.216 55.2 82.8 -44.8 7.4 8.3 -15.7 -1.9 30 30 A A T 3 S+ 0 0 79 -2,-1.6 -1,-0.3 -3,-0.4 -2,-0.1 0.738 104.1 32.7 -75.6 -23.8 11.4 -13.5 -1.0 31 31 A E S < S+ 0 0 145 -3,-1.9 -2,-0.2 1,-0.1 -3,-0.1 0.742 140.5 7.4-104.6 -30.6 12.3 -16.2 1.6 32 32 A Q > + 0 0 10 -4,-0.4 3,-0.6 -7,-0.1 4,-0.2 -0.293 68.2 147.8-154.3 54.1 11.2 -19.5 0.1 33 33 A A T 3 + 0 0 53 -4,-0.5 2,-1.3 1,-0.2 -4,-0.1 0.910 61.5 75.8 -53.1 -46.5 10.0 -19.1 -3.5 34 34 A S T 3 S- 0 0 107 1,-0.2 -1,-0.2 -5,-0.1 3,-0.2 0.079 105.0-114.2 -63.4 16.8 11.1 -22.6 -4.7 35 35 A Q < - 0 0 102 -2,-1.3 -1,-0.2 -3,-0.6 2,-0.1 0.859 50.9-166.4 43.0 38.7 8.2 -24.7 -3.0 36 36 A E > - 0 0 78 -4,-0.2 3,-1.5 1,-0.1 -1,-0.2 -0.352 26.4-126.4 -63.4 129.3 11.2 -26.0 -0.9 37 37 A V T 3 S+ 0 0 106 1,-0.3 -1,-0.1 -3,-0.2 3,-0.1 0.684 105.1 71.8 -53.7 -25.8 10.3 -29.2 1.1 38 38 A K T 3 + 0 0 102 1,-0.2 2,-0.7 2,-0.0 -1,-0.3 0.219 59.7 130.3 -71.7 14.4 11.5 -27.5 4.4 39 39 A N < + 0 0 2 -3,-1.5 7,-0.2 1,-0.2 -1,-0.2 0.175 49.3 83.3 -60.0 20.1 8.3 -25.2 4.2 40 40 A A S S+ 0 0 42 -2,-0.7 -1,-0.2 -3,-0.1 3,-0.1 -0.495 81.2 65.8-112.3 47.4 7.5 -26.1 7.9 41 41 A M S S+ 0 0 146 1,-0.2 -2,-0.1 3,-0.1 2,-0.1 0.511 92.9 49.2-139.7 -45.1 10.0 -23.4 9.2 42 42 A T S S- 0 0 45 -4,-0.2 -1,-0.2 -10,-0.0 0, 0.0 -0.366 111.6 -75.7 -82.2-179.9 8.6 -19.9 8.1 43 43 A E S S+ 0 0 73 -2,-0.1 2,-0.1 -3,-0.1 -4,-0.0 0.509 91.3 131.8 -50.1 -11.5 5.0 -18.6 8.7 44 44 A T + 0 0 7 1,-0.1 -3,-0.1 -16,-0.1 27,-0.1 -0.347 24.4 165.0 -47.8 120.4 4.2 -21.0 5.7 45 45 A L + 0 0 29 -2,-0.1 2,-0.2 -5,-0.1 -1,-0.1 -0.002 62.2 23.1-129.4 19.5 1.1 -23.1 6.6 46 46 A L S S- 0 0 0 -7,-0.2 2,-0.3 -25,-0.1 25,-0.1 -0.884 75.0-110.0-169.1-176.4 0.2 -24.4 3.1 47 47 A V - 0 0 15 -2,-0.2 -26,-0.1 4,-0.1 -25,-0.1 -0.995 49.5 -78.2-142.6 135.6 1.7 -25.2 -0.5 48 48 A Q S S- 0 0 51 -2,-0.3 2,-2.0 1,-0.3 -30,-0.1 -0.081 107.7 -27.5 -43.5 122.8 1.1 -23.3 -3.9 49 49 A N S S- 0 0 97 -31,-0.3 -1,-0.3 -32,-0.1 -31,-0.2 -0.095 97.5-151.2 50.8 -28.0 -2.4 -24.6 -5.2 50 50 A A - 0 0 15 -2,-2.0 22,-0.1 -33,-0.1 -2,-0.0 0.234 16.3 -81.3 46.8-179.7 -1.7 -27.9 -3.3 51 51 A N > - 0 0 48 1,-0.0 4,-1.7 0, 0.0 5,-0.1 -0.505 40.2-101.0-106.1 171.3 -3.0 -31.4 -4.3 52 52 A P H > S+ 0 0 101 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.800 116.9 58.0 -70.8 -24.8 -6.5 -33.0 -3.7 53 53 A D H > S+ 0 0 20 2,-0.2 4,-1.6 21,-0.1 3,-0.3 0.999 110.5 37.5 -59.8 -73.8 -5.2 -35.0 -0.7 54 54 A C H >>S+ 0 0 0 1,-0.2 4,-2.4 2,-0.2 5,-0.5 0.880 116.4 55.6 -47.3 -49.2 -3.8 -32.2 1.5 55 55 A K H X5S+ 0 0 47 -4,-1.7 4,-1.4 1,-0.2 -1,-0.2 0.931 109.7 43.3 -50.6 -57.7 -6.7 -29.9 0.5 56 56 A T H <5S+ 0 0 89 -4,-1.8 -1,-0.2 -3,-0.3 -2,-0.2 0.730 121.1 42.8 -65.1 -24.8 -9.5 -32.3 1.6 57 57 A I H >X5S+ 0 0 51 -4,-1.6 3,-2.2 -3,-0.4 4,-1.8 0.958 112.6 43.6 -88.6 -61.8 -7.7 -33.2 4.9 58 58 A L H 3<5S+ 0 0 1 -4,-2.4 -3,-0.2 1,-0.3 -2,-0.2 0.764 92.2 85.9 -65.8 -19.6 -6.3 -30.0 6.4 59 59 A K T 3< S+ 0 0 57 3,-0.0 3,-2.1 0, 0.0 4,-0.3 0.426 100.0 56.0-135.7 -69.4 0.3 -28.5 15.4 66 66 A T T >> S+ 0 0 57 1,-0.3 4,-2.0 -3,-0.3 3,-0.9 0.646 91.4 77.8 -54.1 -19.1 -0.2 -31.6 13.0 67 67 A L H 3> S+ 0 0 22 1,-0.2 4,-3.0 2,-0.2 -1,-0.3 0.929 79.8 69.8 -51.5 -45.5 -0.6 -29.2 10.0 68 68 A E H <4 S+ 0 0 129 -3,-2.1 4,-0.3 1,-0.2 -1,-0.2 0.792 109.3 34.2 -50.3 -32.8 3.3 -28.8 9.9 69 69 A E H X> S+ 0 0 121 -3,-0.9 4,-2.8 -4,-0.3 3,-1.2 0.908 117.7 53.3 -79.2 -46.3 3.6 -32.4 8.7 70 70 A M H 3X S+ 0 0 39 -4,-2.0 4,-0.9 1,-0.3 -2,-0.2 0.759 93.4 72.8 -63.2 -31.6 0.3 -32.3 6.6 71 71 A M H 3< S+ 0 0 2 -4,-3.0 -1,-0.3 1,-0.2 -3,-0.1 0.846 121.8 8.8 -47.4 -44.0 1.4 -29.2 4.7 72 72 A T H X4 S+ 0 0 24 -3,-1.2 3,-2.5 -4,-0.3 -2,-0.2 0.614 106.2 86.8-122.6 -21.6 4.0 -31.2 2.7 73 73 A A H >< S+ 0 0 56 -4,-2.8 3,-1.9 1,-0.3 4,-0.3 0.815 79.2 74.1 -55.9 -27.9 3.3 -34.9 3.6 74 74 A C G >< S+ 0 0 11 -4,-0.9 3,-0.5 1,-0.3 -1,-0.3 0.670 80.2 72.7 -55.7 -20.8 0.8 -34.9 0.7 75 75 A Q G < S+ 0 0 147 -3,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.665 111.8 24.6 -71.8 -19.3 3.7 -34.9 -1.8 76 76 A G G < S+ 0 0 56 -3,-1.9 -1,-0.2 -4,-0.2 -2,-0.2 0.149 85.9 120.5-127.4 11.7 4.5 -38.6 -1.0 77 77 A V < - 0 0 68 -3,-0.5 4,-0.1 -4,-0.3 -2,-0.1 0.743 50.0-160.7 -58.8 -32.7 1.1 -39.8 0.2 78 78 A G + 0 0 88 -4,-0.2 -1,-0.1 1,-0.1 -4,-0.0 0.458 64.4 40.8 65.7 3.2 0.6 -42.5 -2.5 79 79 A G S S- 0 0 36 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.937 90.6 -93.8-166.7 178.8 -3.2 -42.6 -1.9 80 80 A P - 0 0 126 0, 0.0 3,-0.3 0, 0.0 -2,-0.1 0.213 64.3-116.3 -91.5 9.1 -6.5 -40.7 -1.2 81 81 A G - 0 0 40 1,-0.1 3,-0.0 -4,-0.1 -28,-0.0 -0.267 24.7 -91.4 75.3-169.1 -6.5 -40.9 2.7 82 82 A H S S+ 0 0 188 -3,-0.1 2,-0.2 1,-0.1 -1,-0.1 -0.378 79.5 109.2-143.6 51.8 -9.0 -42.7 4.9 83 83 A K - 0 0 125 -3,-0.3 -1,-0.1 1,-0.1 0, 0.0 -0.644 40.3-170.8-141.7 77.9 -11.8 -40.2 6.0 84 84 A A S S+ 0 0 120 -2,-0.2 2,-0.3 1,-0.1 -1,-0.1 0.535 80.8 15.2 -53.9 -14.7 -15.2 -40.8 4.3 85 85 A R S S- 0 0 178 2,-0.1 2,-0.4 0, 0.0 -1,-0.1 -0.929 87.3-110.2-152.8 142.9 -16.6 -37.5 5.7 86 86 A V 0 0 78 -2,-0.3 -29,-0.1 -27,-0.0 -2,-0.0 -0.650 360.0 360.0 -78.9 128.1 -14.8 -34.4 7.1 87 87 A L 0 0 165 -2,-0.4 -2,-0.1 0, 0.0 -27,-0.1 -0.699 360.0 360.0 176.9 360.0 -15.2 -33.8 10.9