==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 13-MAR-07 2JOH . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; . AUTHOR J.LI,D.LIN . 105 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6020.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 68.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 44 41.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 124 A L > 0 0 78 0, 0.0 3,-1.0 0, 0.0 38,-0.1 0.000 360.0 360.0 360.0 -18.5 5.8 -11.5 1.9 2 125 A G T 3 + 0 0 86 1,-0.3 0, 0.0 36,-0.1 0, 0.0 0.918 360.0 37.8 -68.1 -43.8 8.1 -13.6 4.0 3 126 A G T 3 S+ 0 0 57 2,-0.1 2,-0.5 1,-0.0 -1,-0.3 -0.044 104.9 94.8 -94.3 31.9 11.2 -12.0 2.5 4 127 A Y S < S- 0 0 67 -3,-1.0 36,-0.3 36,-0.1 2,-0.1 -0.942 74.2-134.7-130.5 103.8 9.4 -8.7 2.5 5 128 A M - 0 0 26 -2,-0.5 34,-2.1 34,-0.4 2,-0.3 -0.394 32.6-115.3 -48.8 121.3 9.8 -6.3 5.4 6 129 A L E -A 38 0A 63 32,-0.2 2,-2.3 -2,-0.1 32,-0.3 -0.536 24.3-119.3 -61.3 123.6 6.3 -5.1 6.2 7 130 A G E > -A 37 0A 3 30,-3.3 3,-3.0 -2,-0.3 30,-0.8 -0.578 41.4-114.3 -67.2 80.3 6.2 -1.4 5.5 8 131 A S T 3 S- 0 0 93 -2,-2.3 -1,-0.1 1,-0.3 28,-0.1 0.073 72.7 -48.7 -24.0 83.7 5.5 -0.6 9.1 9 132 A A T > S- 0 0 46 28,-0.2 3,-0.7 2,-0.1 -1,-0.3 0.737 85.6-125.8 41.3 36.0 2.0 0.8 8.5 10 133 A M T < - 0 0 24 -3,-3.0 26,-0.1 1,-0.2 25,-0.1 0.124 49.7 -59.6 42.6-144.8 3.3 3.0 5.8 11 134 A S T 3 - 0 0 54 -4,-0.0 -1,-0.2 25,-0.0 25,-0.1 0.040 65.3-124.8-112.1 20.0 2.6 6.6 6.2 12 135 A R < - 0 0 144 -3,-0.7 23,-0.1 23,-0.5 -2,-0.1 0.752 34.7-168.2 37.2 44.6 -1.1 5.7 6.1 13 136 A P - 0 0 38 0, 0.0 -1,-0.1 0, 0.0 22,-0.1 0.598 5.7-158.9 -34.0 -43.8 -1.4 8.2 3.2 14 137 A L - 0 0 32 1,-0.1 13,-0.0 12,-0.1 9,-0.0 0.993 5.3-153.0 52.9 73.2 -5.2 8.2 3.3 15 138 A I - 0 0 36 1,-0.2 2,-1.5 66,-0.1 8,-0.1 0.703 5.7-162.0 -50.3 -27.6 -5.4 9.5 -0.2 16 139 A H > - 0 0 105 6,-0.3 3,-1.8 7,-0.2 2,-1.2 0.083 20.9-142.9 58.7 -25.9 -8.9 11.1 0.6 17 140 A F T 3 - 0 0 86 -2,-1.5 -1,-0.2 1,-0.3 3,-0.1 0.060 48.6 -76.2 74.8 -27.6 -9.2 11.2 -3.2 18 141 A G T 3 S+ 0 0 77 -2,-1.2 2,-0.5 1,-0.1 -1,-0.3 0.256 119.3 95.1 105.2 -3.8 -11.0 14.5 -3.2 19 142 A N X> - 0 0 61 -3,-1.8 4,-3.5 1,-0.1 3,-0.9 -0.956 62.5-159.1-123.0 108.8 -14.0 12.6 -2.1 20 143 A D H 3> S+ 0 0 126 -2,-0.5 4,-2.5 1,-0.3 5,-0.1 0.738 97.4 64.4 -57.7 -22.1 -14.6 12.6 1.6 21 144 A Y H 3> S+ 0 0 132 2,-0.2 4,-0.9 1,-0.2 -1,-0.3 0.935 114.0 30.7 -61.4 -45.9 -16.8 9.6 0.9 22 145 A E H <> S+ 0 0 19 -3,-0.9 4,-2.2 -6,-0.3 5,-0.3 0.769 113.6 62.7 -83.5 -29.1 -13.6 7.9 -0.3 23 146 A D H X S+ 0 0 35 -4,-3.5 4,-1.6 -7,-0.6 -7,-0.2 0.945 113.2 37.7 -54.0 -46.5 -11.5 9.9 2.2 24 147 A R H X S+ 0 0 97 -4,-2.5 4,-1.3 -5,-0.2 -2,-0.2 0.824 110.9 62.5 -68.9 -34.3 -13.6 8.1 4.7 25 148 A Y H X S+ 0 0 50 -4,-0.9 4,-0.6 1,-0.2 -2,-0.2 0.760 108.2 40.3 -75.0 -24.8 -13.5 5.0 2.6 26 149 A Y H X S+ 0 0 0 -4,-2.2 4,-1.6 2,-0.2 -1,-0.2 0.820 111.8 55.9 -85.2 -37.5 -9.8 4.6 2.9 27 150 A R H < S+ 0 0 147 -4,-1.6 -2,-0.2 -5,-0.3 -3,-0.2 0.756 117.9 37.8 -64.5 -20.1 -9.9 5.6 6.5 28 151 A E H < S+ 0 0 76 -4,-1.3 3,-0.4 -6,-0.2 -1,-0.3 0.684 119.3 47.3 -97.3 -26.6 -12.3 2.8 6.8 29 152 A N H >X S+ 0 0 2 -4,-0.6 4,-3.3 1,-0.2 3,-2.4 0.445 78.2 102.5 -98.3 -1.6 -10.5 0.6 4.4 30 153 A M T 3<>S+ 0 0 8 -4,-1.6 5,-1.6 1,-0.3 -1,-0.2 0.439 76.4 61.4 -67.4 1.5 -7.0 1.1 5.8 31 154 A Y T 345S+ 0 0 158 -3,-0.4 -1,-0.3 3,-0.2 -2,-0.1 0.129 126.0 11.5-106.8 16.6 -7.4 -2.3 7.4 32 155 A R T <45S+ 0 0 66 -3,-2.4 -2,-0.2 -6,-0.2 31,-0.1 0.343 141.3 30.4-158.0 -49.3 -7.7 -4.0 4.0 33 156 A Y T <5S+ 0 0 19 -4,-3.3 -4,-0.1 -7,-0.1 -3,-0.1 -0.413 118.2 167.9-108.9 57.3 -6.8 -1.6 1.1 34 157 A P T 5 - 0 0 0 0, 0.0 -3,-0.2 0, 0.0 -4,-0.2 0.537 62.4 -97.1-100.3-164.5 -4.7 -0.3 3.8 35 158 A N S - 0 0 56 -2,-2.2 3,-2.3 1,-0.2 4,-0.4 0.153 56.1-141.3 68.9 -11.2 15.4 3.5 -3.1 45 168 A Y T 3 - 0 0 150 1,-0.3 -1,-0.2 2,-0.1 49,-0.1 0.599 51.2 -84.5 39.7 22.4 17.0 1.0 -5.6 46 169 A S T 3 S+ 0 0 95 -3,-0.4 -1,-0.3 48,-0.2 -2,-0.1 0.594 130.1 42.3 49.9 14.4 16.9 3.8 -8.2 47 170 A N <> + 0 0 61 -3,-2.3 4,-0.8 47,-0.1 3,-0.3 -0.214 50.2 152.7 177.8 76.7 13.4 2.4 -8.6 48 171 A Q H > S+ 0 0 0 -4,-0.4 4,-1.9 2,-0.2 -3,-0.1 0.793 78.5 75.9 -76.6 -28.0 11.3 1.4 -5.6 49 172 A N H > S+ 0 0 74 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.808 92.5 55.0 -42.2 -31.2 8.5 2.2 -7.9 50 173 A N H > S+ 0 0 100 -3,-0.3 4,-1.2 1,-0.2 -1,-0.2 0.975 108.6 42.4 -70.5 -54.6 9.5 -1.2 -9.3 51 174 A F H X S+ 0 0 48 -4,-0.8 4,-1.6 1,-0.2 -2,-0.2 0.638 108.8 68.0 -65.7 -16.0 9.2 -3.0 -6.0 52 175 A V H X S+ 0 0 0 -4,-1.9 4,-3.9 2,-0.3 5,-0.5 0.983 96.3 45.8 -68.0 -62.4 6.0 -1.0 -5.6 53 176 A H H X S+ 0 0 99 -4,-1.8 4,-0.8 1,-0.3 -2,-0.2 0.822 118.0 48.5 -53.1 -28.1 4.0 -2.6 -8.3 54 177 A D H X S+ 0 0 64 -4,-1.2 4,-0.6 2,-0.2 -1,-0.3 0.817 111.3 48.6 -78.0 -32.1 5.3 -5.8 -6.8 55 178 A a H X S+ 0 0 0 -4,-1.6 4,-3.0 -3,-0.5 3,-0.4 0.862 110.6 49.4 -75.7 -37.5 4.3 -4.5 -3.3 56 179 A V H X>S+ 0 0 5 -4,-3.9 4,-1.4 1,-0.2 5,-0.7 0.867 109.5 56.0 -66.4 -27.6 0.9 -3.6 -4.5 57 180 A N H <5S+ 0 0 67 -4,-0.8 -2,-0.2 -5,-0.5 -1,-0.2 0.737 116.1 34.5 -73.4 -22.8 1.0 -7.1 -5.9 58 181 A I H X5S+ 0 0 17 -4,-0.6 4,-2.6 -3,-0.4 -2,-0.2 0.788 122.7 42.0 -95.4 -32.3 1.7 -8.5 -2.5 59 182 A T H X5S+ 0 0 0 -4,-3.0 4,-0.8 2,-0.3 -3,-0.2 0.847 115.8 41.8 -93.1 -38.3 -0.3 -6.2 -0.3 60 183 A V H <5S+ 0 0 7 -4,-1.4 -1,-0.2 -5,-0.3 -3,-0.1 0.873 120.5 50.5 -76.0 -30.3 -3.5 -5.7 -2.1 61 184 A K H >>XS+ 0 0 72 -5,-0.7 3,-2.7 2,-0.3 4,-1.1 0.939 102.1 54.4 -70.5 -55.1 -3.3 -9.4 -2.7 62 185 A Q H 3<5S+ 0 0 37 -4,-2.6 -1,-0.2 1,-0.3 4,-0.2 0.800 116.0 44.9 -52.7 -25.0 -2.6 -10.5 0.8 63 186 A H T 3<5S+ 0 0 11 -4,-0.8 -1,-0.3 1,-0.2 -2,-0.3 0.416 123.5 33.4 -96.9 -4.5 -5.8 -8.6 1.5 64 187 A T T <45S+ 0 0 18 -3,-2.7 -2,-0.2 9,-0.1 -3,-0.2 0.132 128.7 32.3-134.5 19.6 -7.7 -10.0 -1.5 65 188 A V T <5S+ 0 0 75 -4,-1.1 -3,-0.2 -3,-0.1 -2,-0.1 0.525 130.9 25.0-143.4 -53.1 -6.2 -13.5 -1.7 66 189 A T S >>S+ 0 0 24 -6,-0.6 5,-1.9 2,-0.2 3,-1.5 0.571 90.2 77.2-114.2 -13.5 -7.9 -12.4 2.8 68 191 A T T 345S+ 0 0 58 1,-0.3 -1,-0.1 -7,-0.3 -2,-0.1 0.658 91.3 65.0 -68.0 -9.4 -10.6 -13.0 0.2 69 192 A T T 345S+ 0 0 125 1,-0.2 -1,-0.3 2,-0.1 -2,-0.2 0.676 94.2 54.8 -85.2 -21.2 -11.1 -16.0 2.5 70 193 A K T <45S- 0 0 129 -3,-1.5 -1,-0.2 2,-0.2 -2,-0.2 0.642 130.7 -97.9 -84.0 -15.4 -12.1 -13.7 5.3 71 194 A G T <5S+ 0 0 56 -4,-0.6 2,-0.6 1,-0.3 -3,-0.2 0.544 84.3 133.9 107.4 16.9 -14.7 -12.3 2.9 72 195 A E < + 0 0 21 -5,-1.9 2,-0.3 -40,-0.0 -1,-0.3 -0.889 21.7 153.9-114.6 116.9 -12.6 -9.4 2.0 73 196 A N - 0 0 96 -2,-0.6 2,-0.2 -3,-0.1 -9,-0.1 -0.964 29.5-131.2-141.9 152.4 -12.3 -8.5 -1.6 74 197 A F - 0 0 76 -2,-0.3 2,-0.3 -10,-0.1 -14,-0.0 -0.546 6.6-150.7-103.9 165.5 -11.6 -5.4 -3.6 75 198 A T > - 0 0 74 -2,-0.2 4,-2.6 0, 0.0 5,-0.4 -0.797 45.7 -91.9-123.0 167.3 -13.2 -3.7 -6.6 76 199 A E H > S+ 0 0 159 -2,-0.3 4,-1.5 1,-0.3 -2,-0.0 0.761 135.3 47.7 -54.9 -25.6 -11.4 -1.5 -9.1 77 200 A T H > S+ 0 0 55 2,-0.2 4,-1.0 3,-0.2 -1,-0.3 0.902 112.8 46.5 -69.7 -45.7 -12.3 1.3 -6.8 78 201 A D H > S+ 0 0 9 1,-0.3 4,-1.5 2,-0.2 -2,-0.2 0.721 121.0 40.8 -71.1 -20.0 -11.1 -0.6 -3.9 79 202 A I H X S+ 0 0 12 -4,-2.6 4,-2.3 2,-0.3 5,-0.3 0.749 103.3 61.7 -95.9 -33.4 -8.1 -1.3 -6.0 80 203 A K H X S+ 0 0 52 -4,-1.5 4,-0.5 -5,-0.4 -2,-0.2 0.745 107.7 54.4 -65.0 -16.4 -7.9 2.0 -7.4 81 204 A I H >X>S+ 0 0 0 -4,-1.0 4,-3.6 -6,-0.3 3,-1.4 0.972 106.3 43.5 -73.1 -66.7 -7.4 2.5 -3.7 82 205 A M H 3X>S+ 0 0 1 -4,-1.5 5,-0.9 1,-0.3 4,-0.8 0.720 117.7 49.8 -62.4 -11.7 -4.6 0.1 -3.2 83 206 A E H 3<5S+ 0 0 80 -4,-2.3 5,-0.4 3,-0.2 -1,-0.3 0.740 116.0 40.6 -96.1 -20.7 -3.1 1.5 -6.2 84 207 A R H <<5S+ 0 0 64 -3,-1.4 -2,-0.2 -4,-0.5 -3,-0.2 0.769 128.1 31.9 -92.3 -28.1 -3.6 5.0 -5.0 85 208 A V H X5S+ 0 0 0 -4,-3.6 4,-0.6 3,-0.1 -3,-0.2 0.813 134.4 26.9 -95.5 -35.4 -2.6 4.2 -1.5 86 209 A V H X S+ 0 0 106 -5,-0.4 4,-2.3 2,-0.2 -1,-0.2 0.895 117.6 46.7 -74.1 -42.6 1.7 5.7 -4.4 89 212 A M H X S+ 0 0 1 -4,-0.6 4,-2.3 2,-0.3 -3,-0.2 0.937 112.6 46.4 -73.2 -45.0 2.9 4.8 -1.0 90 213 A a H X S+ 0 0 0 -4,-3.4 4,-0.9 2,-0.2 -1,-0.2 0.868 113.8 52.3 -61.5 -32.3 5.4 2.2 -2.1 91 214 A I H X S+ 0 0 32 -4,-1.0 4,-1.0 -5,-0.4 3,-0.5 0.881 102.9 57.0 -64.4 -40.2 6.4 4.9 -4.6 92 215 A T H >X S+ 0 0 31 -4,-2.3 4,-3.0 1,-0.3 3,-1.0 0.913 102.2 55.6 -55.3 -42.2 6.6 7.2 -1.7 93 216 A Q H 3X>S+ 0 0 0 -4,-2.3 4,-3.0 2,-0.3 5,-0.7 0.804 92.4 69.3 -57.9 -31.6 9.2 4.6 -0.4 94 217 A Y H 3<5S+ 0 0 91 -4,-0.9 -1,-0.2 -3,-0.5 -2,-0.2 0.896 121.4 18.9 -53.3 -37.5 11.0 5.2 -3.7 95 218 A Q H <<5S+ 0 0 121 -4,-1.0 -2,-0.3 -3,-1.0 -1,-0.2 0.663 134.6 44.8 -97.7 -24.8 11.8 8.5 -2.1 96 219 A Q H X5S+ 0 0 46 -4,-3.0 4,-2.0 -5,-0.2 3,-0.5 0.727 108.1 52.4 -99.4 -26.8 11.0 7.6 1.5 97 220 A E H X5S+ 0 0 2 -4,-3.0 4,-2.9 2,-0.3 5,-0.4 0.641 92.4 71.6 -88.6 -13.7 12.7 4.3 1.9 98 221 A S H 4 S+ 0 0 125 -3,-0.5 4,-2.1 -6,-0.2 -2,-0.3 0.855 123.3 35.2 -91.4 -58.0 15.6 7.3 4.0 100 223 A A H X S+ 0 0 36 -4,-2.0 4,-3.7 1,-0.2 5,-0.3 0.888 120.7 46.8 -70.3 -41.1 14.3 4.4 6.0 101 224 A A H X S+ 0 0 3 -4,-2.9 4,-0.7 -59,-0.4 -1,-0.2 0.615 109.9 56.5 -80.0 -11.0 16.2 1.7 4.2 102 225 A Y H 4 S+ 0 0 175 -5,-0.4 -2,-0.2 -60,-0.2 -1,-0.2 0.894 113.1 40.8 -73.0 -48.0 19.2 4.0 4.6 103 226 A Q H < S+ 0 0 156 -4,-2.1 -2,-0.2 1,-0.1 -3,-0.2 0.969 130.4 26.7 -58.4 -59.2 18.6 3.9 8.2 104 227 A R H < 0 0 124 -4,-3.7 -3,-0.2 -5,-0.1 -2,-0.1 0.891 360.0 360.0 -78.2 -39.6 17.7 0.2 8.5 105 228 A A < 0 0 102 -4,-0.7 -3,-0.1 -5,-0.3 -4,-0.1 0.976 360.0 360.0 48.3 360.0 19.7 -1.0 5.5