==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 14-MAR-07 2JOM . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; . AUTHOR J.LI,D.LIN . 105 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6181.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 65.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 3.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 41.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 124 A L 0 0 112 0, 0.0 38,-0.1 0, 0.0 57,-0.0 0.000 360.0 360.0 360.0 19.6 -7.7 12.6 2.7 2 125 A G + 0 0 86 1,-0.1 0, 0.0 3,-0.0 0, 0.0 0.805 360.0 30.8 -82.0 -34.1 -10.9 13.6 4.5 3 126 A G S S+ 0 0 27 37,-0.1 2,-0.5 2,-0.1 36,-0.1 0.814 101.2 96.8 -83.7 -38.3 -12.7 10.8 2.8 4 127 A Y - 0 0 45 36,-0.1 36,-0.3 34,-0.1 2,-0.2 -0.374 60.3-169.7 -60.6 107.4 -9.6 8.7 2.7 5 128 A M E -A 39 0A 63 34,-1.4 34,-3.4 -2,-0.5 2,-1.0 -0.611 39.2 -88.4 -96.4 153.0 -9.8 6.5 5.7 6 129 A L E -A 38 0A 72 -2,-0.2 2,-3.1 32,-0.2 32,-0.3 -0.563 37.3-144.0 -74.1 107.3 -6.8 4.5 6.7 7 130 A G E -A 37 0A 0 30,-2.3 30,-0.7 -2,-1.0 3,-0.3 -0.380 61.2 -60.1 -72.4 63.8 -7.3 1.3 4.7 8 131 A S - 0 0 47 -2,-3.1 2,-1.9 1,-0.2 29,-0.5 0.860 41.6-119.4 67.6 118.1 -5.9 -0.9 7.4 9 132 A A - 0 0 67 -3,-0.2 27,-0.3 27,-0.2 -1,-0.2 -0.636 48.5-168.8 -80.1 76.9 -2.5 -0.8 8.9 10 133 A M - 0 0 26 -2,-1.9 25,-0.2 25,-0.5 -2,-0.0 -0.042 33.3-121.3 -58.1 169.3 -1.7 -4.3 7.7 11 134 A S S S- 0 0 103 1,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.088 73.9 -76.0-103.1 34.4 1.3 -6.2 8.9 12 135 A R - 0 0 45 23,-0.2 -1,-0.1 1,-0.1 23,-0.1 0.705 41.5-118.3 69.5 126.5 2.3 -6.5 5.2 13 136 A P - 0 0 45 0, 0.0 -1,-0.1 0, 0.0 22,-0.0 0.252 53.4 -98.0 -84.1 13.6 0.4 -9.1 3.1 14 137 A L + 0 0 99 -3,-0.1 -2,-0.1 13,-0.0 13,-0.0 0.893 55.6 171.0 62.7 105.3 3.4 -11.2 2.3 15 138 A I + 0 0 21 8,-0.1 8,-0.1 -3,-0.0 -3,-0.0 0.857 2.4 171.8-110.1 -76.7 4.6 -10.2 -1.1 16 139 A H - 0 0 93 7,-0.2 7,-0.0 1,-0.1 8,-0.0 0.561 26.2-158.5 66.4 143.2 8.0 -11.7 -2.3 17 140 A F - 0 0 54 2,-0.1 -1,-0.1 3,-0.0 3,-0.1 0.331 49.0-108.8-126.0 -3.7 9.6 -11.5 -5.6 18 141 A G S S+ 0 0 74 1,-0.2 2,-0.2 2,-0.1 4,-0.0 0.811 82.6 125.7 71.5 31.9 11.9 -14.4 -5.2 19 142 A N - 0 0 65 1,-0.2 -1,-0.2 2,-0.0 -2,-0.1 -0.488 61.6-143.8-113.7 178.2 14.7 -12.0 -5.0 20 143 A D S > S+ 0 0 147 -2,-0.2 4,-2.0 3,-0.1 5,-0.2 0.740 97.2 21.4 -99.6 -64.5 17.5 -11.0 -2.8 21 144 A Y H > S+ 0 0 142 2,-0.2 4,-2.9 1,-0.2 5,-0.1 0.963 131.9 37.4 -77.8 -55.0 17.8 -7.3 -3.0 22 145 A E H > S+ 0 0 66 2,-0.2 4,-2.8 3,-0.2 -1,-0.2 0.808 118.2 54.0 -68.2 -29.9 14.3 -6.2 -4.2 23 146 A D H > S+ 0 0 33 2,-0.2 4,-2.6 1,-0.2 -7,-0.2 0.993 115.4 36.5 -63.6 -63.8 12.8 -8.9 -2.1 24 147 A R H X S+ 0 0 114 -4,-2.0 4,-2.3 2,-0.2 5,-0.5 0.869 112.1 64.3 -51.0 -44.3 14.5 -7.7 1.1 25 148 A Y H >X S+ 0 0 24 -4,-2.9 4,-2.4 1,-0.3 3,-0.6 0.959 109.4 37.1 -44.8 -61.3 13.9 -4.2 -0.3 26 149 A Y H 3X S+ 0 0 3 -4,-2.8 4,-2.3 1,-0.2 -1,-0.3 0.870 110.7 64.2 -56.8 -39.3 10.2 -4.8 -0.0 27 150 A R H 3< S+ 0 0 152 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.848 118.8 24.7 -57.5 -35.6 10.7 -6.8 3.2 28 151 A E H XX S+ 0 0 65 -4,-2.3 3,-1.9 -3,-0.6 4,-1.6 0.648 111.3 74.6-101.6 -22.2 12.1 -3.7 4.9 29 152 A N H 3X S+ 0 0 0 -4,-2.4 4,-3.1 -5,-0.5 -2,-0.2 0.877 80.3 73.7 -55.6 -37.0 10.2 -1.4 2.6 30 153 A M H 3< S+ 0 0 35 -4,-2.3 -1,-0.3 1,-0.2 5,-0.3 0.697 106.3 33.7 -53.2 -24.2 7.1 -2.4 4.5 31 154 A Y H <4 S+ 0 0 187 -3,-1.9 -1,-0.2 3,-0.2 -2,-0.2 0.794 124.6 41.0 -99.4 -39.1 8.3 -0.2 7.4 32 155 A R H < S+ 0 0 11 -4,-1.6 -2,-0.2 1,-0.3 -3,-0.2 0.560 131.4 31.2 -84.4 -13.1 10.0 2.6 5.4 33 156 A Y S < S- 0 0 1 -4,-3.1 -1,-0.3 -5,-0.3 27,-0.1 -0.860 114.6-115.2-147.6 103.3 7.2 2.4 2.9 34 157 A P - 0 0 7 0, 0.0 2,-0.5 0, 0.0 -3,-0.2 0.379 6.5-126.6 -73.9 177.8 4.3 1.5 5.0 35 158 A N S S+ 0 0 38 -5,-0.3 -25,-0.5 -25,-0.2 2,-0.3 -0.552 85.7 73.3-105.9 60.0 1.9 -1.4 5.5 36 159 A Q - 0 0 30 -2,-0.5 2,-0.3 -27,-0.3 -27,-0.2 -0.922 60.9-152.1-166.8 147.5 -1.2 0.8 5.2 37 160 A V E -A 7 0A 0 -30,-0.7 -30,-2.3 -29,-0.5 2,-0.6 -0.808 16.1-126.2-125.3 166.0 -3.1 2.6 2.5 38 161 A Y E +A 6 0A 36 17,-1.2 2,-0.3 -2,-0.3 -32,-0.2 -0.947 50.3 120.5-116.9 114.4 -5.3 5.6 2.5 39 162 A Y E -A 5 0A 1 -34,-3.4 -34,-1.4 -2,-0.6 -2,-0.1 -0.979 53.2-108.8-165.8 162.8 -8.7 5.3 1.0 40 163 A R - 0 0 103 -2,-0.3 2,-0.9 -36,-0.3 -36,-0.1 -0.426 59.5 -70.0 -98.1 173.0 -12.4 5.7 1.8 41 164 A P - 0 0 57 0, 0.0 2,-0.3 0, 0.0 3,-0.3 -0.440 63.0-174.4 -84.9 105.0 -14.8 2.8 2.1 42 165 A V + 0 0 0 -2,-0.9 59,-0.2 1,-0.2 55,-0.0 -0.730 38.0 110.1-106.6 140.2 -15.2 1.5 -1.3 43 166 A D S S+ 0 0 56 -2,-0.3 3,-0.3 54,-0.1 -1,-0.2 0.144 81.2 53.0-173.4 -39.8 -17.4 -1.2 -2.7 44 167 A Q S S+ 0 0 167 -3,-0.3 -2,-0.1 1,-0.2 54,-0.0 0.068 91.6 79.2-100.4 22.7 -20.0 0.6 -4.9 45 168 A Y S S- 0 0 101 2,-0.1 -1,-0.2 3,-0.0 3,-0.1 0.750 76.2-157.6 -96.9 -33.8 -17.3 2.3 -6.9 46 169 A S + 0 0 89 -3,-0.3 2,-0.4 1,-0.2 4,-0.1 0.608 53.6 113.1 69.5 14.7 -16.5 -0.7 -9.1 47 170 A N + 0 0 79 1,-0.2 5,-0.3 2,-0.1 4,-0.2 -0.975 38.5 177.8-123.4 130.0 -13.0 0.6 -9.9 48 171 A Q S >>S+ 0 0 99 -2,-0.4 4,-3.5 3,-0.2 5,-0.6 0.937 81.9 20.8 -97.7 -69.0 -9.9 -1.2 -8.6 49 172 A N T 4>S+ 0 0 104 3,-0.2 5,-1.3 1,-0.2 6,-0.2 0.907 122.2 62.9 -67.2 -38.9 -6.7 0.5 -9.8 50 173 A S T 45S+ 0 0 80 3,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.842 123.9 15.3 -50.4 -43.4 -8.7 3.6 -10.4 51 174 A F T >5S+ 0 0 13 -3,-0.3 4,-1.9 -4,-0.2 -2,-0.2 0.841 134.6 40.4 -98.0 -49.3 -9.5 3.8 -6.7 52 175 A V H X5S+ 0 0 0 -4,-3.5 4,-1.4 2,-0.3 -3,-0.2 0.972 116.1 44.6 -72.6 -64.9 -7.0 1.5 -5.0 53 176 A H H >> S+ 0 0 29 -4,-0.2 4,-2.9 -20,-0.2 3,-0.9 0.694 118.6 43.1 -98.4 -48.2 -2.0 8.8 -1.6 59 182 A T H 3X S+ 0 0 0 -4,-1.4 4,-2.1 1,-0.3 5,-0.4 0.914 107.8 54.7 -69.4 -50.6 -0.1 6.4 0.7 60 183 A V H 3< S+ 0 0 9 -4,-3.0 -1,-0.3 1,-0.2 -3,-0.1 0.457 117.3 44.7 -67.5 -1.6 3.2 6.2 -1.1 61 184 A K H <> S+ 0 0 92 -3,-0.9 4,-2.3 -5,-0.4 6,-0.3 0.778 105.6 53.1 -95.5 -67.8 2.9 10.0 -0.6 62 185 A Q H < S+ 0 0 84 -4,-2.9 -2,-0.2 2,-0.2 -3,-0.2 0.684 128.1 23.3 -48.8 -29.7 1.8 10.5 2.9 63 186 A H T >X>S+ 0 0 35 -4,-2.1 4,-4.7 -5,-0.2 3,-3.5 0.835 119.2 53.7 -96.2 -71.2 4.6 8.4 4.1 64 187 A T T 345S+ 0 0 12 -5,-0.4 -2,-0.2 1,-0.3 -3,-0.1 0.575 105.3 58.9 -39.2 -16.7 7.3 8.4 1.5 65 188 A V T 3<5S+ 0 0 82 -4,-2.3 -1,-0.3 3,-0.2 -3,-0.1 0.463 132.0 5.1-102.4 -1.5 7.4 12.2 1.5 66 189 A T T <45S+ 0 0 100 -3,-3.5 -2,-0.2 -5,-0.3 -3,-0.1 0.336 136.1 50.7-143.4 -29.5 8.2 12.4 5.2 67 190 A T T <5S+ 0 0 37 -4,-4.7 3,-0.4 -6,-0.3 -3,-0.3 0.831 120.5 34.6 -81.8 -38.5 8.7 8.8 6.1 68 191 A T S >>> - 0 0 74 -2,-0.7 3,-1.0 1,-0.0 4,-0.7 -0.490 54.2 -85.1-102.2 170.9 15.2 4.3 -6.0 76 199 A E H >> S+ 0 0 166 1,-0.3 4,-1.6 2,-0.2 3,-1.0 0.870 135.9 47.3 -42.9 -43.5 12.9 3.3 -8.8 77 200 A T H 3> S+ 0 0 38 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.809 104.3 61.8 -69.3 -27.6 12.9 -0.2 -7.3 78 201 A D H <4 S+ 0 0 0 -3,-1.0 4,-0.4 1,-0.2 -1,-0.2 0.563 106.0 49.4 -72.8 -7.2 12.3 1.4 -3.9 79 202 A I H S+ 0 0 0 -4,-0.4 4,-3.4 2,-0.2 5,-0.4 0.976 120.8 42.4 -66.4 -57.6 5.9 -0.1 -1.7 83 206 A E H X S+ 0 0 51 -4,-2.9 4,-3.8 1,-0.2 5,-0.3 0.954 116.6 50.5 -52.3 -48.1 3.4 0.9 -4.3 84 207 A R H X S+ 0 0 71 -4,-4.7 4,-1.5 -5,-0.3 -1,-0.2 0.806 117.1 39.1 -64.7 -34.9 3.0 -2.7 -5.3 85 208 A V H X S+ 0 0 1 -4,-2.1 4,-1.9 -5,-0.4 -1,-0.2 0.956 121.5 41.0 -77.7 -53.0 2.6 -3.9 -1.7 86 209 A V H X S+ 0 0 0 -4,-3.4 4,-1.9 -5,-0.2 -2,-0.2 0.860 117.1 52.4 -65.4 -36.1 0.4 -1.1 -0.5 87 210 A E H X S+ 0 0 48 -4,-3.8 4,-2.2 -5,-0.4 -1,-0.2 0.936 111.3 41.8 -64.0 -50.5 -1.5 -1.1 -3.8 88 211 A Q H X S+ 0 0 56 -4,-1.5 4,-3.1 -5,-0.3 -1,-0.2 0.798 114.8 53.0 -79.0 -24.1 -2.4 -4.8 -3.9 89 212 A M H X S+ 0 0 4 -4,-1.9 4,-3.7 2,-0.2 -1,-0.3 0.865 106.4 51.7 -68.7 -41.5 -3.2 -4.6 -0.3 90 213 A a H X S+ 0 0 0 -4,-1.9 4,-0.5 2,-0.2 -2,-0.2 0.867 111.9 48.2 -61.7 -36.2 -5.5 -1.7 -1.0 91 214 A V H >X S+ 0 0 41 -4,-2.2 4,-2.0 2,-0.2 3,-0.8 0.942 112.1 47.5 -64.0 -51.5 -7.0 -4.0 -3.7 92 215 A T H 3X S+ 0 0 51 -4,-3.1 4,-1.5 1,-0.3 -2,-0.2 0.922 113.4 48.6 -52.9 -44.7 -7.2 -6.8 -1.0 93 216 A Q H 3X S+ 0 0 13 -4,-3.7 4,-2.3 2,-0.2 -1,-0.3 0.621 104.3 62.5 -74.0 -12.9 -8.7 -4.2 1.2 94 217 A Y H X S+ 0 0 22 -4,-0.7 4,-3.2 2,-0.2 3,-0.7 0.808 97.9 54.6 -71.9 -31.4 -16.9 -5.1 5.2 101 224 A A T 3< S+ 0 0 20 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.457 102.8 56.4 -72.5 -4.7 -20.0 -3.6 3.7 102 225 A Y T 34 S+ 0 0 187 3,-0.2 -1,-0.2 -5,-0.2 -2,-0.2 0.540 112.3 41.4 -95.4 -13.5 -21.2 -7.2 4.0 103 226 A Q T <4 S+ 0 0 137 -3,-0.7 -2,-0.2 -4,-0.2 -3,-0.1 0.867 126.3 28.3 -95.8 -50.7 -20.4 -7.0 7.7 104 227 A R < 0 0 165 -4,-3.2 -3,-0.2 -5,-0.0 -2,-0.1 0.618 360.0 360.0 -89.6 -14.6 -21.6 -3.6 8.7 105 228 A A 0 0 110 -5,-0.4 -3,-0.2 -6,-0.1 -4,-0.1 0.748 360.0 360.0-115.3 360.0 -24.4 -3.4 6.1