==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 19-MAR-07 2JOP . COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.GARZA-GARCIA,R.HARRIS,D.ESPOSITO,P.C.DRISCOLL . 110 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6544.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 53.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 20.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 A R 0 0 244 0, 0.0 2,-0.3 0, 0.0 90,-0.1 0.000 360.0 360.0 360.0 -66.3 -102.4 -12.2 -24.2 2 26 A L + 0 0 52 88,-0.2 88,-3.1 2,-0.0 2,-0.3 -0.737 360.0 177.2 -94.4 142.4 -100.4 -9.2 -25.5 3 27 A S > - 0 0 4 -2,-0.3 3,-1.8 86,-0.2 6,-0.2 -0.978 42.1-116.0-142.1 158.5 -99.7 -8.8 -29.2 4 28 A W T 3 S+ 0 0 13 -2,-0.3 52,-0.2 1,-0.3 7,-0.1 0.510 114.9 58.5 -74.1 -0.9 -98.0 -6.2 -31.4 5 29 A Y T 3 S+ 0 0 123 83,-0.1 -1,-0.3 50,-0.1 48,-0.1 0.346 77.7 111.1-108.2 5.2 -101.4 -5.5 -33.1 6 30 A D X - 0 0 45 -3,-1.8 3,-0.6 1,-0.1 -4,-0.0 -0.653 68.0-138.8 -74.9 131.2 -103.1 -4.6 -29.8 7 31 A P T 3 S+ 0 0 77 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.913 104.2 45.2 -58.0 -45.3 -103.9 -0.8 -29.8 8 32 A D T 3 S+ 0 0 129 2,-0.1 2,-0.6 -3,-0.0 -2,-0.0 0.632 93.2 97.9 -75.8 -13.8 -103.0 -0.4 -26.2 9 33 A F < - 0 0 5 -3,-0.6 2,-0.4 -6,-0.2 19,-0.1 -0.669 69.1-148.2 -78.9 117.6 -99.8 -2.4 -26.8 10 34 A Q + 0 0 109 -2,-0.6 17,-2.4 17,-0.3 2,-0.3 -0.747 30.1 151.1 -93.5 132.0 -96.9 -0.0 -27.4 11 35 A A E +A 26 0A 6 -2,-0.4 2,-0.3 15,-0.2 15,-0.2 -0.981 4.5 142.3-154.0 157.4 -94.2 -1.1 -29.7 12 36 A R E -A 25 0A 77 13,-2.4 13,-3.3 -2,-0.3 2,-0.3 -0.958 51.6 -63.0-175.6-177.6 -91.6 0.4 -32.1 13 37 A L E -A 24 0A 10 6,-0.3 11,-0.2 -2,-0.3 3,-0.1 -0.630 63.3 -91.8 -85.3 147.8 -88.0 0.0 -33.4 14 38 A T - 0 0 20 9,-3.0 2,-0.4 -2,-0.3 4,-0.3 -0.275 51.6 -90.0 -60.2 138.5 -85.2 0.5 -31.0 15 39 A R S S+ 0 0 243 1,-0.2 -1,-0.2 2,-0.1 4,-0.1 -0.331 81.9 122.7 -52.3 104.2 -83.8 4.0 -30.7 16 40 A S S S- 0 0 56 -2,-0.4 -1,-0.2 2,-0.2 6,-0.1 0.389 83.2 -56.3-128.8 -92.3 -81.1 3.9 -33.4 17 41 A N S S+ 0 0 170 4,-0.5 2,-0.4 1,-0.2 5,-0.1 0.318 113.2 57.7-142.7 -4.1 -81.0 6.3 -36.4 18 42 A S B > -C 21 0B 43 3,-0.6 3,-1.3 -4,-0.3 -1,-0.2 -0.986 57.2-153.6-142.1 127.5 -84.4 5.8 -37.9 19 43 A K T 3 S+ 0 0 123 -2,-0.4 -6,-0.3 1,-0.3 43,-0.1 0.590 108.2 39.3 -69.3 -10.7 -87.9 6.2 -36.6 20 44 A a T 3 S+ 0 0 26 1,-0.1 2,-0.3 -8,-0.1 -1,-0.3 0.019 114.1 56.5-129.6 27.0 -88.9 3.6 -39.2 21 45 A Q B < +C 18 0B 78 -3,-1.3 -3,-0.6 86,-0.3 -4,-0.5 -0.922 68.5 74.1-158.8 133.4 -85.9 1.2 -39.1 22 46 A G B S-D 106 0C 0 84,-2.7 84,-1.3 -2,-0.3 -7,-0.1 -0.905 77.7 -43.1 155.2 178.2 -84.2 -0.8 -36.3 23 47 A Q S S- 0 0 3 -2,-0.3 -9,-3.0 82,-0.2 2,-0.4 -0.381 71.7 -93.8 -68.2 156.2 -84.5 -3.9 -34.1 24 48 A L E -A 13 0A 0 11,-0.3 11,-2.6 -11,-0.2 2,-0.5 -0.610 38.7-172.9 -83.6 127.6 -88.0 -4.5 -32.7 25 49 A E E +AB 12 34A 28 -13,-3.3 -13,-2.4 -2,-0.4 2,-0.4 -0.964 9.2 177.8-120.0 112.0 -88.7 -3.1 -29.2 26 50 A V E -AB 11 33A 0 7,-1.8 7,-2.4 -2,-0.5 2,-1.0 -0.946 27.5-134.2-121.5 135.6 -92.0 -4.1 -27.7 27 51 A Y E + B 0 32A 127 -17,-2.4 2,-0.4 -2,-0.4 -17,-0.3 -0.752 45.9 148.7 -90.2 101.9 -93.4 -3.3 -24.3 28 52 A L E > - B 0 31A 1 3,-2.3 2,-3.8 -2,-1.0 3,-1.9 -0.996 61.1 -34.2-142.4 133.0 -94.8 -6.5 -22.8 29 53 A K T 3 S- 0 0 164 -2,-0.4 3,-0.1 1,-0.3 -2,-0.1 -0.203 132.4 -9.5 68.9 -54.4 -95.2 -8.0 -19.4 30 54 A D T 3 S+ 0 0 111 -2,-3.8 2,-0.3 1,-0.3 -1,-0.3 0.426 120.6 39.6-153.8 -10.4 -92.1 -6.6 -17.9 31 55 A G E < -B 28 0A 13 -3,-1.9 -3,-2.3 -5,-0.1 2,-2.2 -0.999 68.6-116.7-157.0 144.4 -89.9 -4.9 -20.5 32 56 A W E -B 27 0A 67 -2,-0.3 2,-0.5 -5,-0.3 -5,-0.3 -0.679 60.7-155.0 -67.4 76.7 -89.4 -2.9 -23.6 33 57 A H E -B 26 0A 29 -7,-2.4 -7,-1.8 -2,-2.2 2,-1.0 -0.523 14.5-143.8 -75.9 114.4 -88.0 -6.2 -24.8 34 58 A M E -B 25 0A 54 -2,-0.5 47,-2.9 45,-0.2 -9,-0.2 -0.690 30.6-167.9 -73.6 104.4 -85.5 -5.8 -27.6 35 59 A V - 0 0 0 -11,-2.6 -11,-0.3 -2,-1.0 47,-0.2 -0.343 34.5-118.6 -91.1 174.3 -86.4 -8.9 -29.7 36 60 A b - 0 0 0 45,-0.4 2,-2.5 -13,-0.1 68,-0.7 0.161 45.9-126.0 -97.9 17.2 -84.6 -10.5 -32.5 37 61 A S S S+ 0 0 3 -13,-0.2 5,-0.1 1,-0.2 -1,-0.1 -0.257 103.1 63.9 73.9 -50.8 -87.6 -9.8 -34.7 38 62 A Q S > S+ 0 0 0 -2,-2.5 4,-1.2 3,-0.1 -1,-0.2 0.239 77.9 126.5 -90.5 15.9 -88.0 -13.4 -35.9 39 63 A S T >4 + 0 0 0 2,-0.2 2,-1.8 1,-0.1 3,-0.7 -0.032 61.8 24.7 -62.1 173.9 -88.8 -14.5 -32.3 40 64 A W B 34 S+f 84 0D 1 43,-3.0 45,-0.5 1,-0.3 -1,-0.1 -0.515 132.3 32.9 70.4 -84.4 -92.0 -16.5 -31.5 41 65 A G T 34 S- 0 0 27 -2,-1.8 -1,-0.3 43,-0.2 -2,-0.2 0.949 73.5-173.7 -69.4 -51.7 -92.6 -18.1 -34.9 42 66 A R << + 0 0 100 -4,-1.2 -3,-0.1 -3,-0.7 -2,-0.1 0.780 26.0 154.5 59.0 30.0 -88.9 -18.5 -36.0 43 67 A S - 0 0 95 -4,-0.2 2,-0.2 -5,-0.1 -1,-0.1 0.921 59.0 -6.0 -55.7 -55.5 -90.4 -19.5 -39.4 44 68 A S - 0 0 62 -6,-0.1 3,-0.3 1,-0.0 56,-0.1 -0.785 63.1-112.7-136.1 176.9 -87.5 -18.6 -41.6 45 69 A K S S+ 0 0 137 1,-0.3 2,-0.3 -2,-0.2 57,-0.2 0.614 117.8 26.3 -87.0 -16.8 -84.1 -16.8 -41.5 46 70 A Q S S- 0 0 122 23,-0.1 -1,-0.3 58,-0.1 2,-0.1 -0.794 92.5-137.9-145.4 98.8 -85.5 -14.1 -43.6 47 71 A W - 0 0 25 -3,-0.3 21,-0.3 -2,-0.3 -9,-0.0 -0.354 9.1-158.2 -66.1 131.7 -89.3 -13.8 -43.2 48 72 A E S S+ 0 0 196 -2,-0.1 -1,-0.2 19,-0.1 21,-0.0 0.462 76.8 86.7 -83.5 -3.4 -91.3 -13.2 -46.4 49 73 A D + 0 0 76 1,-0.1 -2,-0.1 2,-0.1 -1,-0.1 -0.877 46.4 168.6-102.3 105.8 -94.0 -11.8 -44.2 50 74 A P + 0 0 58 0, 0.0 59,-0.2 0, 0.0 -1,-0.1 -0.018 56.6 75.7-100.4 27.5 -93.5 -8.0 -43.6 51 75 A S + 0 0 50 1,-0.1 2,-0.6 13,-0.1 -2,-0.1 -0.187 46.1 77.1-119.2-154.8 -96.9 -7.5 -42.0 52 76 A Q S S+ 0 0 86 1,-0.2 3,-0.3 -2,-0.1 -1,-0.1 0.072 93.5 71.2 71.0 -25.6 -98.9 -8.1 -38.8 53 77 A A >> + 0 0 0 -2,-0.6 4,-1.7 1,-0.2 3,-0.6 0.065 59.9 115.9-103.9 23.6 -97.1 -5.1 -37.2 54 78 A S H 3> S+ 0 0 55 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.897 71.6 57.3 -59.1 -41.0 -98.9 -2.6 -39.4 55 79 A K H 3> S+ 0 0 30 -3,-0.3 4,-1.5 2,-0.2 -1,-0.3 0.837 105.8 53.8 -58.7 -33.3 -100.6 -1.1 -36.3 56 80 A V H <> S+ 0 0 1 -3,-0.6 4,-0.9 2,-0.2 3,-0.3 0.993 114.9 33.7 -66.8 -61.9 -97.1 -0.5 -34.9 57 81 A c H <>S+ 0 0 0 -4,-1.7 5,-3.1 1,-0.2 6,-0.5 0.785 114.6 60.3 -72.0 -24.7 -95.5 1.5 -37.8 58 82 A Q H ><5S+ 0 0 137 -4,-2.6 3,-1.5 -5,-0.3 -1,-0.2 0.908 105.2 48.3 -63.5 -40.8 -98.9 3.1 -38.6 59 83 A R H 3<5S+ 0 0 157 -4,-1.5 -1,-0.2 -3,-0.3 -2,-0.2 0.699 111.5 50.1 -72.6 -18.3 -98.9 4.5 -35.0 60 84 A L T 3<5S- 0 0 36 -4,-0.9 -1,-0.3 3,-0.2 -2,-0.2 0.301 111.9-128.4 -95.0 7.2 -95.3 5.6 -35.9 61 85 A N T < 5S+ 0 0 121 -3,-1.5 -3,-0.2 -5,-0.2 -2,-0.1 0.762 74.3 126.2 45.0 35.5 -96.7 7.2 -39.1 62 86 A a S - 0 0 69 -42,-0.1 2,-3.4 -3,-0.0 4,-2.3 -0.983 13.3-129.8-128.2 123.6 -77.0 -8.0 -27.3 77 101 A P T 4 S+ 0 0 74 0, 0.0 4,-0.1 0, 0.0 18,-0.1 -0.116 108.3 25.9 -66.4 48.3 -76.8 -11.8 -26.2 78 102 A Q T 4 S+ 0 0 147 -2,-3.4 18,-0.0 2,-0.0 19,-0.0 0.064 123.9 44.5-168.8 -56.7 -77.7 -10.7 -22.7 79 103 A S T 4 S+ 0 0 59 16,-0.1 -45,-0.2 2,-0.0 2,-0.0 0.933 110.6 55.1 -70.7 -48.8 -79.6 -7.5 -22.8 80 104 A S S < S- 0 0 1 -4,-2.3 16,-1.2 -47,-0.1 2,-0.3 -0.248 75.2-143.6 -84.6 174.1 -81.9 -8.4 -25.7 81 105 A I E -G 95 0E 3 -47,-2.9 2,-0.5 14,-0.3 -45,-0.4 -0.901 14.0-143.6-137.0 160.8 -84.2 -11.5 -25.9 82 106 A I E -G 94 0E 0 12,-2.5 12,-0.6 -2,-0.3 2,-0.1 -0.962 27.7-157.0-122.6 108.7 -85.6 -14.0 -28.3 83 107 A d E -G 93 0E 0 -2,-0.5 -43,-3.0 10,-0.3 10,-0.2 -0.357 8.5-162.4 -83.0 169.2 -89.2 -14.9 -27.4 84 108 A Y B +f 40 0D 63 8,-0.8 2,-0.4 -45,-0.3 -43,-0.2 -0.702 41.9 66.2-137.9-172.6 -90.9 -18.1 -28.4 85 109 A G S S- 0 0 35 -45,-0.5 2,-0.3 -2,-0.2 5,-0.1 -0.796 94.8 -15.4 98.5-138.4 -94.3 -19.7 -28.8 86 110 A Q S > S- 0 0 138 -2,-0.4 3,-2.0 3,-0.1 2,-0.3 -0.823 74.3 -99.6-107.5 147.6 -96.8 -18.5 -31.4 87 111 A L T 3 S+ 0 0 65 -2,-0.3 -47,-0.1 1,-0.3 3,-0.1 -0.478 111.8 31.8 -67.1 123.3 -96.5 -15.2 -33.3 88 112 A G T 3 S+ 0 0 7 -2,-0.3 2,-0.8 -86,-0.0 -1,-0.3 0.311 90.4 105.2 108.5 -6.0 -98.8 -12.7 -31.7 89 113 A S < + 0 0 47 -3,-2.0 2,-2.1 -86,-0.1 3,-0.4 -0.691 39.7 172.4-108.9 79.0 -98.4 -14.1 -28.2 90 114 A F + 0 0 0 -88,-3.1 -88,-0.2 -2,-0.8 3,-0.1 -0.477 51.1 99.3 -83.0 63.7 -96.1 -11.5 -26.5 91 115 A S S S+ 0 0 33 -2,-2.1 2,-0.3 1,-0.3 -1,-0.2 0.186 79.7 36.4-135.4 13.2 -96.5 -13.2 -23.1 92 116 A N + 0 0 99 -3,-0.4 -8,-0.8 -8,-0.2 -1,-0.3 -0.875 59.6 155.8-168.9 132.2 -93.3 -15.2 -22.9 93 117 A d E -G 83 0E 33 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.3 -0.857 18.9-153.3-144.1-179.6 -89.7 -14.8 -24.0 94 118 A S E -G 82 0E 60 -12,-0.6 -12,-2.5 -2,-0.3 2,-0.2 -0.913 37.2 -79.8-149.1 175.7 -86.2 -15.9 -23.2 95 119 A H E -G 81 0E 98 -14,-0.3 2,-0.3 -2,-0.3 -14,-0.3 -0.511 55.3 -87.9 -87.8 151.4 -82.7 -14.4 -23.7 96 120 A S + 0 0 2 -16,-1.2 -1,-0.1 -20,-0.3 -16,-0.1 -0.358 68.0 134.8 -61.2 114.1 -80.8 -14.4 -27.0 97 121 A R - 0 0 185 -2,-0.3 2,-0.3 -3,-0.0 -1,-0.2 0.564 69.0 -23.7-120.0 -76.6 -78.8 -17.6 -27.4 98 122 A N S S+ 0 0 145 -16,-0.1 2,-0.2 4,-0.0 4,-0.1 -0.786 78.3 117.2-153.9 99.5 -79.0 -19.4 -30.7 99 123 A D S S- 0 0 49 -2,-0.3 -60,-0.1 2,-0.2 -54,-0.0 -0.568 75.4 -75.4-137.8-153.6 -81.8 -19.1 -33.3 100 124 A M S S+ 0 0 97 -2,-0.2 2,-1.2 -62,-0.1 -61,-0.0 0.470 96.8 99.2 -95.2 -2.6 -82.2 -17.9 -36.8 101 125 A b + 0 0 3 1,-0.1 2,-1.8 2,-0.1 -2,-0.2 -0.701 41.1 175.9 -92.1 91.3 -82.1 -14.2 -35.9 102 126 A H S S- 0 0 118 -2,-1.2 -31,-0.4 -57,-0.2 -30,-0.3 -0.572 88.9 -55.4 -82.6 67.9 -78.7 -12.9 -36.7 103 127 A S S S- 0 0 1 -2,-1.8 -32,-2.6 1,-0.2 2,-0.3 0.985 74.9-154.5 48.8 68.4 -80.1 -9.6 -35.7 104 128 A L E - E 0 70C 3 -68,-0.7 2,-0.4 -34,-0.2 -1,-0.2 -0.587 14.0-138.0 -69.9 130.4 -83.0 -9.7 -38.2 105 129 A G E - E 0 69C 8 -36,-2.8 -36,-1.7 -2,-0.3 2,-0.4 -0.785 12.9-155.9-105.6 131.8 -83.9 -6.1 -38.9 106 130 A L E -DE 22 68C 7 -84,-1.3 -84,-2.7 -2,-0.4 2,-0.3 -0.798 9.2-174.6 -99.7 142.5 -87.3 -4.6 -39.2 107 131 A T E - E 0 67C 25 -40,-1.4 -40,-2.7 -2,-0.4 -86,-0.3 -0.874 36.3-108.0-144.8 107.2 -87.9 -1.4 -41.1 108 132 A c E S- E 0 66C 2 -42,-0.4 2,-2.4 -2,-0.3 -42,-0.4 -0.065 87.0 -38.2 -46.5 108.1 -91.3 0.2 -41.2 109 133 A L 0 0 80 -44,-1.0 -1,-0.2 -59,-0.2 -46,-0.1 -0.440 360.0 360.0 73.4 -65.2 -92.7 -0.5 -44.7 110 134 A E 0 0 161 -2,-2.4 -43,-0.1 -48,-0.3 -4,-0.0 -0.754 360.0 360.0-148.3 360.0 -89.3 0.1 -46.4