==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-JAN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAR-07 2JOQ . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HP_0495; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR A.GUTMANAS,A.LEMAK,A.YEE,M.KARRA,S.SRISAILAM,A.SEMESI,C.H.AR . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6623.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 27.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Q 0 0 229 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 141.5 2.0 0.2 -1.1 2 2 A G - 0 0 79 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.144 360.0-106.7 80.7 175.6 4.4 -2.0 -3.1 3 3 A H - 0 0 173 -2,-0.0 -1,-0.0 0, 0.0 0, 0.0 -0.990 19.8-110.9-142.5 150.9 4.7 -5.8 -2.7 4 4 A M - 0 0 166 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.360 44.6 -98.2 -71.3 156.9 7.2 -8.2 -1.3 5 5 A P - 0 0 100 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.018 33.9-104.1 -62.1-178.5 9.3 -10.5 -3.6 6 6 A S S > S+ 0 0 97 3,-0.1 3,-0.8 2,-0.0 2,-0.2 0.258 84.2 117.5 -95.5 11.9 8.3 -14.1 -4.4 7 7 A D T 3 S+ 0 0 132 1,-0.2 3,-0.1 2,-0.0 -3,-0.0 -0.527 74.2 20.6 -80.9 147.5 11.1 -15.3 -2.1 8 8 A S T 3 S+ 0 0 89 1,-0.2 -1,-0.2 -2,-0.2 2,-0.2 0.775 89.8 179.8 63.6 28.1 10.2 -17.4 1.0 9 9 A K < - 0 0 148 -3,-0.8 -1,-0.2 1,-0.1 -3,-0.1 -0.402 32.9-116.7 -64.6 126.3 6.9 -18.1 -0.8 10 10 A K - 0 0 158 -2,-0.2 -1,-0.1 -3,-0.1 3,-0.1 -0.532 38.4-118.6 -62.8 123.0 4.5 -20.3 1.2 11 11 A P - 0 0 100 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.254 28.5 -96.1 -68.2 152.3 4.0 -23.5 -0.8 12 12 A T - 0 0 130 1,-0.0 2,-0.4 2,-0.0 0, 0.0 -0.535 37.5-155.5 -71.0 123.8 0.6 -24.5 -2.2 13 13 A I - 0 0 80 -2,-0.3 2,-0.9 -3,-0.1 4,-0.0 -0.885 14.4-128.4-104.2 133.7 -1.1 -27.1 0.1 14 14 A I - 0 0 131 -2,-0.4 54,-0.1 54,-0.0 -2,-0.0 -0.711 32.9-132.8 -89.0 105.9 -3.7 -29.4 -1.4 15 15 A Y S S+ 0 0 63 -2,-0.9 52,-0.2 52,-0.1 2,-0.1 -0.830 80.9 45.8-101.7 145.0 -6.9 -29.4 0.6 16 16 A P S S+ 0 0 83 0, 0.0 2,-0.3 0, 0.0 51,-0.2 0.558 87.2 125.7 -78.3 156.9 -8.7 -31.5 1.6 17 17 A C E -A 66 0A 65 49,-1.7 49,-2.7 -2,-0.1 2,-0.4 -0.974 64.9 -83.2-166.3 159.2 -5.9 -33.7 3.1 18 18 A L E -A 65 0A 111 -2,-0.3 2,-0.4 47,-0.3 47,-0.3 -0.591 43.8-162.9 -69.0 124.3 -4.8 -35.4 6.2 19 19 A W E -A 64 0A 44 45,-2.8 45,-1.7 -2,-0.4 2,-0.5 -0.909 11.0-134.3-111.6 143.8 -2.9 -32.9 8.5 20 20 A D E -A 63 0A 75 -2,-0.4 2,-0.4 43,-0.2 43,-0.2 -0.854 19.6-173.4-106.7 127.1 -0.7 -34.1 11.3 21 21 A Y E -A 62 0A 1 41,-3.2 41,-2.7 -2,-0.5 2,-0.6 -0.953 15.3-146.1-118.9 135.7 -0.8 -32.5 14.8 22 22 A R E -AB 61 89A 85 67,-1.9 67,-2.5 -2,-0.4 2,-0.6 -0.907 18.3-174.0-102.8 118.6 1.6 -33.3 17.7 23 23 A V E -AB 60 88A 0 37,-2.5 37,-2.9 -2,-0.6 2,-0.7 -0.933 7.5-168.1-119.5 108.9 -0.1 -33.1 21.1 24 24 A I E +AB 59 87A 33 63,-2.0 62,-2.8 -2,-0.6 63,-1.3 -0.863 19.2 169.0 -98.9 110.0 2.0 -33.5 24.3 25 25 A M E -AB 58 85A 3 33,-2.2 33,-3.1 -2,-0.7 60,-0.2 -0.841 42.0-133.1-119.8 157.7 -0.3 -34.0 27.4 26 26 A T S S+ 0 0 57 58,-2.1 2,-0.3 -2,-0.3 59,-0.1 0.149 87.0 70.8 -93.6 19.7 0.4 -34.9 31.0 27 27 A T - 0 0 35 31,-0.2 -2,-0.2 57,-0.1 31,-0.1 -0.974 60.3-157.0-135.4 147.0 -2.4 -37.5 30.9 28 28 A K S S+ 0 0 143 -2,-0.3 2,-1.7 1,-0.1 -1,-0.1 0.534 82.0 90.7 -90.9 -11.7 -3.0 -40.8 29.3 29 29 A D + 0 0 118 -3,-0.0 2,-1.0 1,-0.0 3,-0.2 -0.617 60.8 179.0 -86.0 79.0 -6.8 -40.2 29.7 30 30 A T + 0 0 22 -2,-1.7 -2,-0.0 1,-0.2 -1,-0.0 -0.757 27.7 127.3 -89.0 100.8 -7.3 -38.4 26.3 31 31 A S >> + 0 0 49 -2,-1.0 4,-3.0 3,-0.1 3,-0.9 0.693 68.7 47.7-110.9 -68.0 -11.0 -37.5 26.1 32 32 A T H 3> S+ 0 0 61 1,-0.3 4,-2.6 -3,-0.2 5,-0.2 0.803 109.1 58.8 -46.6 -38.6 -11.3 -33.8 25.2 33 33 A L H 3> S+ 0 0 1 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.933 113.8 35.1 -59.9 -48.4 -8.7 -34.3 22.5 34 34 A K H <> S+ 0 0 76 -3,-0.9 4,-2.9 2,-0.2 -2,-0.2 0.867 113.9 60.7 -74.9 -35.5 -10.7 -36.9 20.6 35 35 A E H X S+ 0 0 107 -4,-3.0 4,-1.6 1,-0.2 -2,-0.2 0.931 102.2 50.1 -55.4 -51.0 -14.0 -35.1 21.6 36 36 A L H < S+ 0 0 16 -4,-2.6 4,-0.3 1,-0.2 -1,-0.2 0.827 114.9 46.3 -60.7 -31.1 -13.1 -31.9 19.7 37 37 A L H ><>S+ 0 0 0 -4,-0.8 3,-1.6 -5,-0.2 5,-0.6 0.911 107.1 56.0 -74.8 -44.8 -12.2 -34.1 16.7 38 38 A E H ><5S+ 0 0 83 -4,-2.9 3,-2.2 1,-0.3 -2,-0.2 0.752 91.6 72.1 -63.6 -26.2 -15.4 -36.2 16.8 39 39 A T T 3<5S+ 0 0 90 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.788 89.5 61.4 -61.6 -26.0 -17.6 -33.1 16.7 40 40 A Y T < 5S- 0 0 43 -3,-1.6 -1,-0.3 -4,-0.3 -2,-0.2 0.550 103.8-136.2 -75.8 -8.7 -16.6 -32.7 13.0 41 41 A Q T < 5 + 0 0 169 -3,-2.2 -3,-0.1 1,-0.2 -2,-0.1 0.602 66.2 120.2 63.0 12.7 -18.2 -36.2 12.5 42 42 A R < - 0 0 62 -5,-0.6 -1,-0.2 1,-0.1 -2,-0.2 -0.711 68.8-101.4-105.1 156.3 -15.2 -37.1 10.4 43 43 A P - 0 0 90 0, 0.0 22,-0.7 0, 0.0 2,-0.3 -0.272 39.7-178.8 -71.4 162.9 -12.6 -39.9 11.0 44 44 A F E -C 64 0A 60 20,-0.2 2,-0.5 -26,-0.0 20,-0.2 -0.982 27.7-117.6-160.1 153.4 -9.2 -39.4 12.6 45 45 A K E -C 63 0A 88 18,-3.1 18,-1.8 -2,-0.3 2,-0.6 -0.878 23.0-164.4 -99.4 123.5 -6.1 -41.3 13.5 46 46 A L E +C 62 0A 53 -2,-0.5 2,-0.3 16,-0.2 16,-0.2 -0.946 18.9 170.4-108.7 119.2 -5.2 -41.3 17.2 47 47 A E E -C 61 0A 87 14,-3.1 14,-2.9 -2,-0.6 2,-0.5 -0.893 30.3-143.9-128.2 155.2 -1.6 -42.5 17.9 48 48 A F E +C 60 0A 102 -2,-0.3 12,-0.2 12,-0.2 3,-0.1 -0.980 19.6 175.3-118.6 117.0 0.8 -42.6 20.9 49 49 A K E - 0 0 109 10,-2.3 2,-0.3 -2,-0.5 -1,-0.2 0.963 53.9 -45.4 -85.5 -60.5 4.4 -41.9 19.9 50 50 A N E -C 59 0A 93 9,-0.9 9,-3.1 7,-0.0 2,-0.3 -0.971 43.8-127.1-167.6 167.7 6.5 -41.8 23.2 51 51 A T E -C 58 0A 36 -2,-0.3 7,-0.2 7,-0.2 4,-0.0 -0.957 35.5 -95.7-131.4 147.9 6.6 -40.5 26.8 52 52 A S > - 0 0 36 5,-2.5 3,-2.4 -2,-0.3 -1,-0.1 -0.068 44.8 -99.3 -56.7 165.1 9.3 -38.6 28.7 53 53 A K T 3 S+ 0 0 204 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.682 127.6 47.5 -65.5 -17.9 11.8 -40.5 30.8 54 54 A N T 3 S- 0 0 131 3,-0.1 -1,-0.3 0, 0.0 -2,-0.1 0.313 111.6-121.1-101.0 5.1 9.7 -39.6 33.9 55 55 A A S < S+ 0 0 47 -3,-2.4 -2,-0.1 2,-0.2 3,-0.1 0.755 82.8 120.1 58.1 26.4 6.5 -40.7 32.2 56 56 A K + 0 0 116 1,-0.2 2,-0.5 -29,-0.0 -1,-0.1 0.855 64.8 45.4 -87.4 -40.3 5.4 -37.1 32.8 57 57 A F - 0 0 87 -31,-0.1 -5,-2.5 29,-0.0 2,-0.6 -0.933 69.5-160.0-113.8 122.5 4.8 -36.0 29.3 58 58 A Y E -AC 25 51A 27 -33,-3.1 -33,-2.2 -2,-0.5 2,-0.8 -0.907 10.5-146.1-105.1 118.5 2.9 -38.1 26.8 59 59 A S E -AC 24 50A 23 -9,-3.1 -10,-2.3 -2,-0.6 -9,-0.9 -0.753 20.8-171.0 -87.1 112.0 3.5 -37.4 23.1 60 60 A F E -AC 23 48A 11 -37,-2.9 -37,-2.5 -2,-0.8 2,-0.5 -0.775 12.8-145.7-104.8 148.5 0.3 -38.1 21.2 61 61 A N E -AC 22 47A 2 -14,-2.9 -14,-3.1 -2,-0.3 2,-0.4 -0.964 15.9-176.0-116.9 122.0 -0.1 -38.1 17.4 62 62 A V E +AC 21 46A 0 -41,-2.7 -41,-3.2 -2,-0.5 2,-0.4 -0.957 4.6 177.9-118.4 136.3 -3.3 -36.9 15.8 63 63 A S E +AC 20 45A 12 -18,-1.8 -18,-3.1 -2,-0.4 2,-0.3 -0.962 12.3 158.3-139.6 121.1 -4.1 -37.0 12.0 64 64 A M E -AC 19 44A 0 -45,-1.7 -45,-2.8 -2,-0.4 2,-0.5 -0.964 44.2 -97.7-141.9 155.7 -7.4 -35.8 10.5 65 65 A E E -A 18 0A 84 -22,-0.7 2,-0.5 -2,-0.3 -47,-0.3 -0.635 34.7-167.3 -76.1 120.1 -8.8 -34.6 7.2 66 66 A V E -A 17 0A 0 -49,-2.7 -49,-1.7 -2,-0.5 3,-0.1 -0.948 11.4-166.2-108.1 128.2 -8.9 -30.8 6.9 67 67 A S S S+ 0 0 60 -2,-0.5 2,-0.3 -51,-0.2 -1,-0.1 0.665 73.9 7.3 -87.5 -18.7 -11.0 -29.4 4.0 68 68 A N S > S- 0 0 66 -51,-0.1 4,-1.4 -53,-0.1 -51,-0.1 -0.918 78.5-101.2-151.5 178.7 -9.6 -25.9 4.4 69 69 A E H > S+ 0 0 131 -2,-0.3 4,-1.5 2,-0.2 5,-0.2 0.789 113.6 63.2 -77.6 -28.9 -7.0 -23.9 6.3 70 70 A S H > S+ 0 0 79 2,-0.2 4,-3.0 1,-0.2 3,-0.4 0.941 104.9 46.2 -63.0 -47.1 -9.5 -22.4 8.8 71 71 A E H > S+ 0 0 21 1,-0.2 4,-2.8 2,-0.2 5,-0.4 0.933 107.3 58.7 -56.9 -46.5 -10.2 -25.9 10.1 72 72 A R H X S+ 0 0 30 -4,-1.4 4,-0.8 1,-0.2 -1,-0.2 0.827 114.6 37.3 -54.2 -34.8 -6.5 -26.6 10.3 73 73 A N H X S+ 0 0 66 -4,-1.5 4,-1.8 -3,-0.4 -2,-0.2 0.922 114.9 50.8 -83.8 -48.4 -6.2 -23.6 12.6 74 74 A E H X S+ 0 0 62 -4,-3.0 4,-2.0 1,-0.2 -2,-0.2 0.908 110.5 50.3 -60.3 -43.6 -9.3 -23.9 14.7 75 75 A I H X S+ 0 0 0 -4,-2.8 4,-2.0 1,-0.2 -1,-0.2 0.911 108.5 52.8 -60.0 -43.3 -8.7 -27.5 15.5 76 76 A F H X S+ 0 0 50 -4,-0.8 4,-0.8 -5,-0.4 -1,-0.2 0.850 108.2 51.6 -60.1 -34.5 -5.1 -26.6 16.6 77 77 A Q H < S+ 0 0 113 -4,-1.8 3,-0.4 1,-0.2 4,-0.3 0.861 107.1 52.0 -72.3 -35.0 -6.7 -24.0 18.9 78 78 A K H >< S+ 0 0 55 -4,-2.0 3,-1.3 1,-0.2 -2,-0.2 0.853 102.0 61.7 -67.6 -33.7 -9.0 -26.6 20.4 79 79 A I H >< S+ 0 0 2 -4,-2.0 3,-0.7 1,-0.3 -1,-0.2 0.798 103.1 49.6 -62.1 -29.8 -5.9 -28.7 21.0 80 80 A S T 3< S+ 0 0 63 -4,-0.8 3,-0.4 -3,-0.4 -1,-0.3 0.531 99.2 68.2 -87.1 -4.8 -4.6 -26.0 23.3 81 81 A Q T < S+ 0 0 150 -3,-1.3 -1,-0.2 -4,-0.3 -2,-0.2 0.370 76.7 84.1 -93.4 3.5 -8.0 -25.8 25.1 82 82 A L S < S- 0 0 8 -3,-0.7 2,-0.7 -4,-0.2 -1,-0.2 0.845 75.6-157.2 -71.1 -34.6 -7.4 -29.3 26.6 83 83 A D S S+ 0 0 140 -3,-0.4 -1,-0.1 -4,-0.2 -2,-0.1 -0.127 82.5 81.8 77.3 -36.6 -5.3 -27.8 29.5 84 84 A K S S+ 0 0 79 -2,-0.7 -58,-2.1 -59,-0.1 2,-0.3 0.760 74.6 93.5 -62.1 -25.9 -3.8 -31.3 29.8 85 85 A V E +B 25 0A 21 -60,-0.2 -60,-0.3 -6,-0.2 3,-0.1 -0.532 49.0 179.0 -76.7 131.6 -1.5 -30.2 27.0 86 86 A V E S+ 0 0 75 -62,-2.8 2,-0.3 1,-0.3 -61,-0.2 0.604 75.9 19.3-102.7 -20.0 1.9 -28.7 27.9 87 87 A Q E -B 24 0A 102 -63,-1.3 -63,-2.0 2,-0.0 2,-0.4 -0.883 63.4-161.7-156.6 118.7 3.1 -28.2 24.3 88 88 A T E -B 23 0A 30 -2,-0.3 2,-0.6 -65,-0.2 -65,-0.2 -0.862 6.8-159.6 -98.3 133.2 1.1 -28.0 21.0 89 89 A L E +B 22 0A 60 -67,-2.5 -67,-1.9 -2,-0.4 2,-0.4 -0.921 16.4 170.3-115.1 104.7 3.0 -28.5 17.8 90 90 A G 0 0 24 -2,-0.6 -69,-0.1 -69,-0.2 -14,-0.0 -0.504 360.0 360.0-112.4 60.3 1.1 -27.1 14.8 91 91 A S 0 0 131 -2,-0.4 -1,-0.2 -71,-0.2 -70,-0.1 0.950 360.0 360.0 -84.3 360.0 3.7 -27.3 12.1