==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 06-APR-07 2JOW . COMPND 2 MOLECULE: PROTEIN PRGI; . SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; . AUTHOR Y.WANG,A.N.OUELLETTE,C.W.EGAN,R.N.DE GUZMAN . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7152.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 85.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 21.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 62.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 253 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 133.6 3.9 5.9 -20.2 2 2 A A - 0 0 94 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.984 360.0-107.1-150.1 160.7 3.8 6.7 -16.4 3 3 A T - 0 0 88 -2,-0.3 5,-0.1 1,-0.1 2,-0.0 -0.590 61.0 -81.5 -82.2 148.0 4.9 5.7 -12.9 4 4 A P > - 0 0 96 0, 0.0 3,-2.0 0, 0.0 4,-0.3 -0.299 31.6-131.0 -64.9 135.5 2.1 4.3 -10.8 5 5 A W G > S+ 0 0 173 1,-0.3 3,-1.7 2,-0.2 4,-0.3 0.753 101.4 71.7 -57.8 -28.1 -0.2 6.9 -9.1 6 6 A S G 3 S+ 0 0 88 1,-0.3 -1,-0.3 2,-0.2 3,-0.2 0.711 97.1 51.4 -62.6 -20.4 0.2 5.2 -5.6 7 7 A G G < S+ 0 0 59 -3,-2.0 -1,-0.3 1,-0.1 -2,-0.2 0.503 122.2 31.0 -88.1 -7.1 3.8 6.4 -5.5 8 8 A Y S X> S+ 0 0 136 -3,-1.7 4,-2.2 -4,-0.3 3,-1.6 0.042 78.6 126.7-138.9 15.4 2.8 10.0 -6.3 9 9 A L H 3>> + 0 0 81 -4,-0.3 4,-2.5 1,-0.3 5,-1.2 0.868 67.5 61.7 -53.9 -44.3 -0.7 10.2 -4.7 10 10 A D H 345S+ 0 0 153 1,-0.2 -1,-0.3 3,-0.2 -4,-0.1 0.186 116.3 33.9 -75.1 19.3 -0.0 13.3 -2.5 11 11 A D H <>5S+ 0 0 123 -3,-1.6 4,-0.6 -6,-0.2 -2,-0.2 0.439 121.5 45.0-130.3 -41.4 0.5 15.2 -5.8 12 12 A V H <5S+ 0 0 72 -4,-2.2 3,-0.3 -7,-0.2 -3,-0.2 0.931 128.4 27.4 -74.8 -50.8 -2.0 13.5 -8.2 13 13 A S T ><5S+ 0 0 56 -4,-2.5 3,-2.6 -5,-0.2 4,-0.4 0.868 111.5 70.2 -74.9 -37.8 -4.9 13.5 -5.7 14 14 A A T >4X S+ 0 0 137 -4,-0.6 4,-1.1 -3,-0.3 3,-0.8 0.828 88.0 59.4 -52.0 -33.7 -4.5 18.6 -7.1 16 16 A F H <> S+ 0 0 51 -3,-2.6 4,-3.0 1,-0.2 5,-0.3 0.861 89.3 70.9 -60.2 -39.2 -8.0 18.4 -5.6 17 17 A D H <4 S+ 0 0 110 -3,-0.8 -1,-0.2 -4,-0.4 -2,-0.2 0.633 106.2 36.1 -65.9 -15.8 -6.9 20.3 -2.4 18 18 A T H <> S+ 0 0 94 -3,-0.8 4,-0.7 -4,-0.4 -1,-0.2 0.698 116.3 51.4-106.0 -27.4 -6.4 23.6 -4.3 19 19 A G H >X S+ 0 0 19 -4,-1.1 3,-0.8 2,-0.2 4,-0.7 0.918 110.4 50.6 -73.2 -40.4 -9.5 23.3 -6.7 20 20 A V H >X S+ 0 0 12 -4,-3.0 4,-2.9 1,-0.2 3,-0.9 0.863 103.9 60.8 -57.3 -38.0 -11.7 22.5 -3.6 21 21 A D H 3> S+ 0 0 77 -5,-0.3 4,-3.0 1,-0.3 5,-0.2 0.744 93.4 61.3 -69.7 -21.6 -10.3 25.6 -2.0 22 22 A N H X S+ 0 0 100 -4,-1.2 4,-2.5 -3,-0.2 3,-0.6 0.876 113.3 52.4 -75.2 -44.4 -21.0 37.5 5.6 34 34 A L H 3< S+ 0 0 28 -4,-1.7 -2,-0.2 1,-0.3 -3,-0.2 0.695 109.3 49.8 -72.1 -19.7 -22.5 34.9 8.0 35 35 A A T 3< S+ 0 0 80 -4,-2.4 -1,-0.3 2,-0.1 -2,-0.2 0.672 115.0 47.7 -81.8 -23.1 -19.8 35.9 10.6 36 36 A A T <4 S- 0 0 81 -3,-0.6 -2,-0.2 -4,-0.4 -3,-0.1 0.909 138.7 -2.6 -80.8 -52.4 -20.9 39.6 9.9 37 37 A K S >< S- 0 0 137 -4,-2.5 3,-2.0 1,-0.2 7,-0.2 -0.351 87.2-165.2-139.8 48.0 -24.8 39.5 10.1 38 38 A P T 3 S+ 0 0 64 0, 0.0 6,-0.2 0, 0.0 -1,-0.2 0.503 70.2 27.6 -16.0 -91.1 -25.4 35.7 10.7 39 39 A S T 3 S+ 0 0 103 4,-0.1 -5,-0.1 5,-0.1 6,-0.0 0.354 78.2 134.2 -74.9 9.5 -28.9 34.4 10.2 40 40 A D X> - 0 0 53 -3,-2.0 4,-3.1 1,-0.2 3,-0.6 -0.447 54.7-145.7 -48.5 107.2 -29.6 37.2 7.6 41 41 A P H 3> S+ 0 0 89 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.779 90.7 62.1 -67.6 -24.3 -31.3 34.8 5.2 42 42 A A H 3> S+ 0 0 82 2,-0.2 4,-0.6 3,-0.2 -2,-0.1 0.926 119.2 27.6 -64.5 -42.7 -30.1 36.6 2.0 43 43 A L H <> S+ 0 0 23 -3,-0.6 4,-2.3 2,-0.2 -9,-0.2 0.882 121.9 52.7 -80.6 -43.6 -26.4 36.0 3.0 44 44 A L H X S+ 0 0 57 -4,-3.1 4,-2.8 1,-0.2 5,-0.2 0.872 109.7 49.8 -63.9 -35.0 -27.0 32.7 5.1 45 45 A A H X S+ 0 0 43 -4,-2.2 4,-1.5 -5,-0.3 -1,-0.2 0.845 108.6 51.8 -76.9 -26.9 -28.8 31.2 2.2 46 46 A A H X S+ 0 0 46 -4,-0.6 4,-2.5 -5,-0.2 -2,-0.2 0.888 112.0 49.0 -68.0 -36.7 -25.9 32.1 -0.2 47 47 A Y H X S+ 0 0 65 -4,-2.3 4,-2.8 -17,-0.3 -2,-0.2 0.969 111.4 46.3 -60.0 -55.0 -23.7 30.4 2.4 48 48 A Q H X S+ 0 0 98 -4,-2.8 4,-0.9 1,-0.2 -1,-0.2 0.789 112.9 52.8 -66.0 -24.3 -25.8 27.3 2.5 49 49 A S H X S+ 0 0 52 -4,-1.5 4,-2.6 -5,-0.2 3,-0.5 0.954 111.2 44.4 -65.9 -52.0 -25.9 27.4 -1.3 50 50 A K H X S+ 0 0 44 -4,-2.5 4,-2.3 2,-0.3 -23,-0.2 0.870 106.3 60.8 -66.1 -37.1 -22.0 27.6 -1.5 51 51 A L H X S+ 0 0 72 -4,-2.8 4,-0.8 2,-0.2 -1,-0.2 0.834 112.3 40.2 -53.2 -38.4 -21.8 24.8 1.2 52 52 A S H X S+ 0 0 50 -4,-0.9 4,-1.7 -3,-0.5 -2,-0.3 0.883 110.4 56.7 -79.7 -40.8 -23.7 22.7 -1.4 53 53 A E H X S+ 0 0 76 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.807 103.6 56.0 -58.6 -32.7 -21.7 24.1 -4.4 54 54 A Y H X S+ 0 0 69 -4,-2.3 4,-1.8 2,-0.2 -1,-0.2 0.898 106.7 48.0 -68.8 -37.8 -18.6 22.9 -2.6 55 55 A N H X S+ 0 0 100 -4,-0.8 4,-1.6 2,-0.2 -2,-0.2 0.793 110.3 53.6 -69.8 -27.2 -20.1 19.4 -2.6 56 56 A L H X S+ 0 0 82 -4,-1.7 4,-2.9 2,-0.3 -2,-0.2 0.838 103.7 53.8 -71.9 -34.6 -20.9 20.0 -6.3 57 57 A Y H X S+ 0 0 48 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.939 110.6 48.4 -57.4 -43.1 -17.1 20.8 -6.8 58 58 A R H < S+ 0 0 85 -4,-1.8 -2,-0.3 2,-0.2 -1,-0.2 0.857 110.8 49.2 -61.9 -39.1 -16.8 17.3 -5.1 59 59 A N H >< S+ 0 0 115 -4,-1.6 3,-1.2 1,-0.2 -2,-0.2 0.902 110.0 49.8 -68.2 -43.5 -19.4 15.9 -7.6 60 60 A A H >X S+ 0 0 50 -4,-2.9 4,-2.7 1,-0.3 3,-2.2 0.890 102.3 63.3 -61.4 -37.3 -17.5 17.5 -10.5 61 61 A Q T 3< S+ 0 0 53 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.062 104.1 48.2 -75.0 22.9 -14.3 15.8 -8.9 62 62 A S T <4 S+ 0 0 60 -3,-1.2 -1,-0.3 -5,-0.1 -2,-0.2 0.059 113.5 46.9-142.3 16.7 -16.2 12.6 -9.7 63 63 A N T X4 S+ 0 0 103 -3,-2.2 3,-1.9 2,-0.1 -2,-0.2 0.620 106.8 52.3-122.9 -50.4 -17.0 13.6 -13.3 64 64 A T G >X S+ 0 0 57 -4,-2.7 4,-2.5 1,-0.3 3,-2.0 0.910 104.6 60.9 -49.3 -43.5 -13.5 14.9 -14.4 65 65 A V G 34 S+ 0 0 81 -5,-0.3 -1,-0.3 1,-0.3 4,-0.1 0.659 110.2 40.1 -54.4 -25.6 -12.3 11.5 -13.2 66 66 A K G <4 S+ 0 0 117 -3,-1.9 -1,-0.3 2,-0.1 -2,-0.2 0.102 111.7 58.4-116.2 11.8 -14.6 10.0 -15.9 67 67 A V T X> S+ 0 0 66 -3,-2.0 4,-1.6 2,-0.2 3,-1.0 0.631 93.3 61.3-113.8 -33.1 -13.8 12.7 -18.5 68 68 A F H 3X S+ 0 0 116 -4,-2.5 4,-2.3 1,-0.3 -3,-0.1 0.872 100.9 60.5 -58.2 -31.4 -10.0 12.0 -18.6 69 69 A K H 3> S+ 0 0 117 -5,-0.3 4,-1.2 2,-0.2 -1,-0.3 0.779 100.6 52.6 -56.0 -36.7 -11.6 8.7 -19.7 70 70 A D H <> S+ 0 0 93 -3,-1.0 4,-1.4 2,-0.2 -2,-0.2 0.817 106.7 49.8 -79.1 -32.0 -13.1 10.6 -22.7 71 71 A I H X S+ 0 0 91 -4,-1.6 4,-2.1 2,-0.2 -2,-0.2 0.929 112.0 50.1 -65.3 -44.8 -9.7 12.1 -23.7 72 72 A D H X S+ 0 0 96 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.816 106.2 54.1 -65.5 -28.7 -8.5 8.5 -23.5 73 73 A A H X S+ 0 0 31 -4,-1.2 4,-2.1 2,-0.2 -1,-0.2 0.822 106.8 52.0 -71.2 -31.2 -11.4 7.4 -25.7 74 74 A A H X S+ 0 0 57 -4,-1.4 4,-2.1 2,-0.2 -2,-0.2 0.892 108.2 50.5 -67.2 -38.8 -10.1 10.1 -28.2 75 75 A I H X S+ 0 0 95 -4,-2.1 4,-1.7 2,-0.2 -2,-0.2 0.883 107.8 54.3 -59.6 -40.9 -6.7 8.3 -27.9 76 76 A L H X S+ 0 0 119 -4,-1.8 4,-1.2 2,-0.2 -2,-0.2 0.927 109.8 45.3 -59.3 -46.9 -8.7 5.1 -28.6 77 77 A E H X S+ 0 0 131 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.846 106.9 59.9 -64.8 -34.2 -10.1 6.8 -31.8 78 78 A H H X S+ 0 0 129 -4,-2.1 4,-0.6 2,-0.2 -2,-0.2 0.862 101.4 53.9 -63.4 -35.6 -6.5 8.0 -32.6 79 79 A H H >< S+ 0 0 163 -4,-1.7 3,-0.5 2,-0.2 -1,-0.2 0.890 111.6 44.6 -65.0 -38.2 -5.3 4.4 -32.7 80 80 A H H >< S+ 0 0 131 -4,-1.2 3,-2.0 1,-0.2 -2,-0.2 0.898 105.3 62.4 -68.5 -39.4 -8.1 3.7 -35.3 81 81 A H H 3< S+ 0 0 151 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.619 83.4 79.3 -63.4 -14.0 -7.1 6.9 -37.2 82 82 A H T << 0 0 172 -4,-0.6 -1,-0.3 -3,-0.5 -2,-0.2 0.696 360.0 360.0 -63.4 -21.2 -3.7 5.3 -37.8 83 83 A H < 0 0 219 -3,-2.0 -1,-0.2 -4,-0.1 -2,-0.2 0.856 360.0 360.0 -56.3 360.0 -5.5 3.3 -40.7