==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 03-MAY-07 2JPC . COMPND 2 MOLECULE: SSRB; . SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; . AUTHOR X.LIAO,L.KENNEY,W.SHENG,INTEGRATED CENTER FOR STRUCTURE AND . 61 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5094.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 60.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 15 A L > 0 0 155 0, 0.0 4,-1.4 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -60.5 8.7 -4.7 -7.6 2 16 A R H > + 0 0 168 2,-0.2 4,-1.6 1,-0.2 5,-0.2 0.868 360.0 46.0 -76.6 -39.6 6.8 -6.1 -4.6 3 17 A E H > S+ 0 0 43 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.538 111.4 56.6 -79.2 -7.5 6.3 -2.8 -3.0 4 18 A R H > S+ 0 0 153 2,-0.2 4,-0.5 3,-0.1 -2,-0.2 0.815 104.9 48.2 -90.3 -37.4 5.3 -1.4 -6.4 5 19 A Q H X S+ 0 0 82 -4,-1.4 4,-2.2 2,-0.2 5,-0.2 0.920 118.8 39.6 -68.5 -46.1 2.5 -3.9 -7.0 6 20 A V H X S+ 0 0 2 -4,-1.6 4,-4.8 2,-0.2 5,-0.3 0.968 114.3 51.2 -67.1 -55.3 1.0 -3.3 -3.6 7 21 A L H X S+ 0 0 23 -4,-0.9 4,-1.2 1,-0.2 -1,-0.2 0.704 111.0 55.1 -54.8 -18.7 1.6 0.4 -3.6 8 22 A K H X S+ 0 0 121 -4,-0.5 4,-1.2 2,-0.2 -1,-0.2 0.939 115.7 32.2 -79.1 -52.7 -0.1 0.2 -6.9 9 23 A L H < S+ 0 0 10 -4,-2.2 -2,-0.2 2,-0.2 -3,-0.2 0.852 118.0 57.2 -72.0 -36.3 -3.3 -1.4 -5.7 10 24 A I H >< S+ 0 0 1 -4,-4.8 3,-2.4 1,-0.2 4,-0.3 0.912 102.6 54.2 -59.8 -44.6 -3.0 0.3 -2.4 11 25 A D H 3< S+ 0 0 42 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.2 0.883 109.9 47.0 -56.4 -40.7 -3.0 3.7 -4.2 12 26 A E T 3< S- 0 0 125 -4,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.190 138.5 -80.5 -86.3 16.1 -6.3 2.6 -5.9 13 27 A G S < S+ 0 0 34 -3,-2.4 -1,-0.2 1,-0.1 -2,-0.2 0.528 72.4 142.6 89.0 125.7 -7.5 1.5 -2.4 14 28 A Y - 0 0 77 -4,-0.3 -1,-0.1 -3,-0.1 -4,-0.1 -0.043 20.0-173.6 166.2 78.8 -6.6 -1.7 -0.7 15 29 A T - 0 0 105 1,-0.1 -2,-0.0 3,-0.0 -5,-0.0 0.916 58.4 -79.0 -45.5 -96.4 -6.1 -1.8 3.0 16 30 A N S > S+ 0 0 29 3,-0.1 4,-3.6 -6,-0.0 5,-0.3 0.447 122.5 64.7-141.7 -49.3 -4.9 -5.3 3.8 17 31 A H H > S+ 0 0 143 1,-0.3 4,-0.9 2,-0.2 5,-0.1 0.869 111.1 43.8 -50.0 -40.7 -7.8 -7.7 3.8 18 32 A G H > S+ 0 0 28 2,-0.2 4,-1.7 1,-0.2 -1,-0.3 0.877 112.2 51.4 -72.4 -40.2 -8.2 -6.8 0.1 19 33 A I H >>S+ 0 0 0 1,-0.2 4,-4.2 2,-0.2 5,-1.0 0.876 109.0 51.5 -63.8 -38.8 -4.5 -7.2 -0.6 20 34 A S H <5S+ 0 0 8 -4,-3.6 -1,-0.2 1,-0.2 -2,-0.2 0.785 112.5 46.4 -67.9 -28.1 -4.5 -10.5 1.1 21 35 A E H <5S+ 0 0 151 -4,-0.9 -2,-0.2 -5,-0.3 -1,-0.2 0.714 122.2 36.4 -84.7 -24.0 -7.4 -11.5 -1.1 22 36 A K H <5S+ 0 0 104 -4,-1.7 -2,-0.2 2,-0.2 -3,-0.2 0.899 134.0 23.2 -91.3 -55.3 -5.7 -10.1 -4.2 23 37 A L T <5S- 0 0 43 -4,-4.2 -3,-0.2 1,-0.2 2,-0.2 0.958 126.4 -77.8 -75.6 -55.4 -2.1 -11.0 -3.4 24 38 A H < - 0 0 148 -5,-1.0 2,-1.1 -6,-0.1 -1,-0.2 -0.664 53.8 -63.9 157.6 147.9 -2.8 -13.9 -1.1 25 39 A I S S+ 0 0 152 -2,-0.2 -4,-0.1 1,-0.2 -5,-0.1 -0.297 91.3 108.8 -52.7 92.4 -3.8 -14.6 2.5 26 40 A S > + 0 0 51 -2,-1.1 4,-2.1 -10,-0.2 5,-0.2 -0.107 23.9 157.4-166.3 49.9 -0.8 -13.1 4.1 27 41 A I H > S+ 0 0 67 1,-0.2 4,-1.3 2,-0.2 -2,-0.1 0.761 83.7 55.2 -51.5 -25.2 -1.8 -9.8 5.8 28 42 A K H > S+ 0 0 170 2,-0.2 4,-1.3 1,-0.2 3,-0.4 0.956 101.6 52.4 -72.8 -53.5 1.4 -10.5 7.8 29 43 A T H > S+ 0 0 73 1,-0.3 4,-1.2 2,-0.2 3,-0.3 0.845 109.1 53.0 -50.2 -37.6 3.7 -10.7 4.9 30 44 A V H X S+ 0 0 5 -4,-2.1 4,-4.6 1,-0.2 3,-0.4 0.901 97.3 64.7 -65.3 -42.4 2.3 -7.4 3.8 31 45 A E H X S+ 0 0 114 -4,-1.3 4,-1.4 -3,-0.4 -1,-0.2 0.846 104.6 47.0 -48.1 -38.6 3.1 -5.9 7.2 32 46 A T H X S+ 0 0 95 -4,-1.3 4,-1.4 -3,-0.3 -1,-0.3 0.842 115.7 44.5 -72.6 -35.4 6.7 -6.5 6.3 33 47 A H H X S+ 0 0 11 -4,-1.2 4,-4.3 -3,-0.4 5,-0.2 0.909 106.3 59.5 -74.1 -44.8 6.3 -5.0 2.9 34 48 A R H X S+ 0 0 37 -4,-4.6 4,-1.8 1,-0.2 -2,-0.2 0.880 106.4 49.4 -49.7 -43.7 4.3 -2.1 4.1 35 49 A M H X S+ 0 0 118 -4,-1.4 4,-1.8 -5,-0.3 -1,-0.2 0.923 114.9 42.4 -62.6 -47.1 7.3 -1.1 6.3 36 50 A N H X S+ 0 0 54 -4,-1.4 4,-0.6 1,-0.2 -2,-0.2 0.901 109.1 59.8 -66.1 -42.4 9.7 -1.4 3.4 37 51 A M H >X S+ 0 0 0 -4,-4.3 4,-1.6 1,-0.2 3,-0.6 0.874 109.1 43.8 -52.5 -41.9 7.2 0.4 1.1 38 52 A M H 3X>S+ 0 0 12 -4,-1.8 4,-2.6 -5,-0.2 5,-0.8 0.864 110.2 54.1 -71.9 -38.2 7.3 3.4 3.4 39 53 A R H 3<5S+ 0 0 160 -4,-1.8 -1,-0.2 3,-0.2 -2,-0.2 0.480 106.6 58.1 -74.2 -2.3 11.1 3.2 3.7 40 54 A K H <<5S+ 0 0 136 -4,-0.6 -2,-0.2 -3,-0.6 -1,-0.2 0.910 124.1 15.3 -90.0 -57.1 11.1 3.3 -0.1 41 55 A L H <5S- 0 0 60 -4,-1.6 -2,-0.2 -5,-0.1 -3,-0.2 0.648 108.8-121.2 -90.5 -19.4 9.3 6.5 -0.7 42 56 A Q T <5 + 0 0 158 -4,-2.6 -3,-0.2 -5,-0.3 -4,-0.1 0.965 63.3 127.6 74.8 84.4 9.8 7.6 2.9 43 57 A V < - 0 0 40 -5,-0.8 3,-0.1 1,-0.1 -5,-0.1 0.231 59.1-109.8-128.3-108.1 6.3 8.2 4.3 44 58 A H S S+ 0 0 163 1,-0.5 2,-0.3 -2,-0.0 -6,-0.1 0.068 76.5 4.3-159.8 -75.8 4.9 6.8 7.5 45 59 A K S > S- 0 0 127 -7,-0.1 4,-4.2 -8,-0.1 -1,-0.5 -0.773 74.8 -99.5-123.9 168.9 2.2 4.2 7.3 46 60 A V H > S+ 0 0 5 -2,-0.3 4,-2.4 1,-0.2 5,-0.1 0.854 125.3 52.5 -54.5 -36.9 0.4 2.4 4.4 47 61 A T H > S+ 0 0 95 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.965 115.0 37.9 -63.7 -55.4 -2.4 4.9 4.9 48 62 A E H > S+ 0 0 111 1,-0.2 4,-1.1 2,-0.2 3,-0.4 0.918 120.8 46.4 -62.2 -45.9 -0.1 7.9 4.6 49 63 A L H X S+ 0 0 0 -4,-4.2 4,-2.1 1,-0.2 5,-0.3 0.844 102.9 65.8 -64.8 -34.5 2.0 6.3 2.0 50 64 A L H X S+ 0 0 35 -4,-2.4 4,-1.8 -5,-0.4 -1,-0.2 0.888 102.6 46.8 -53.3 -42.6 -1.2 5.3 0.2 51 65 A N H X S+ 0 0 32 -4,-1.4 4,-4.6 -3,-0.4 5,-0.4 0.818 104.0 63.8 -68.8 -31.7 -1.8 8.9 -0.4 52 66 A C H < S+ 0 0 48 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.952 107.8 39.9 -55.9 -53.0 1.7 9.3 -1.6 53 67 A A H < S+ 0 0 27 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.859 117.8 51.6 -64.1 -36.3 1.1 7.0 -4.5 54 68 A R H < S- 0 0 58 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.971 80.5-169.1 -64.1 -56.9 -2.3 8.6 -4.9 55 69 A R < + 0 0 197 -4,-4.6 -3,-0.1 1,-0.1 -4,-0.1 0.895 68.3 73.0 65.2 41.9 -0.9 12.2 -5.0 56 70 A M S S- 0 0 108 -5,-0.4 -5,-0.1 0, 0.0 -4,-0.1 0.421 74.6-150.9-145.6 -50.6 -4.4 13.6 -4.7 57 71 A R + 0 0 188 -6,-0.2 -6,-0.0 1,-0.0 -5,-0.0 0.976 56.6 119.7 64.7 58.4 -5.8 13.1 -1.2 58 72 A L - 0 0 83 -7,-0.0 -7,-0.0 0, 0.0 -3,-0.0 0.732 46.3-164.7-114.2 -56.1 -9.5 12.9 -2.2 59 73 A I + 0 0 124 -8,-0.0 -8,-0.0 1,-0.0 -46,-0.0 0.975 47.5 122.1 62.8 57.8 -10.7 9.6 -1.1 60 74 A E 0 0 146 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.771 360.0 360.0-110.8 -61.3 -13.9 9.7 -3.2 61 75 A Y 0 0 239 0, 0.0 -49,-0.0 0, 0.0 -48,-0.0 0.907 360.0 360.0 -38.3 360.0 -13.9 6.7 -5.6