==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 25-MAY-07 2JPX . COMPND 2 MOLECULE: VPU PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR S.PARK,S.J.OPELLA . 21 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1283.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 81.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 81.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A I > 0 0 109 0, 0.0 4,-2.0 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -34.1 7.6 6.2 11.9 2 7 A A H > + 0 0 69 2,-0.2 4,-1.7 1,-0.2 5,-0.1 0.859 360.0 49.1 -69.9 -37.3 9.2 5.9 8.4 3 8 A I H > S+ 0 0 63 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.919 111.5 48.3 -67.9 -46.0 8.4 2.2 8.4 4 9 A V H > S+ 0 0 62 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.917 114.1 46.3 -60.5 -46.0 4.8 2.6 9.4 5 10 A A H X S+ 0 0 54 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.835 113.6 50.6 -65.7 -34.1 4.3 5.3 6.8 6 11 A L H X S+ 0 0 45 -4,-1.7 4,-3.4 2,-0.2 5,-0.3 0.918 109.0 49.8 -69.7 -46.0 6.0 3.1 4.2 7 12 A V H X S+ 0 0 54 -4,-2.9 4,-2.1 1,-0.2 -2,-0.2 0.915 115.3 43.5 -59.0 -46.0 3.9 0.1 5.1 8 13 A V H X S+ 0 0 57 -4,-2.2 4,-1.3 2,-0.2 -1,-0.2 0.834 115.4 50.3 -68.8 -34.0 0.7 2.1 4.8 9 14 A A H X S+ 0 0 55 -4,-1.7 4,-0.7 -5,-0.2 -2,-0.2 0.916 114.5 42.1 -70.0 -45.7 2.0 3.8 1.6 10 15 A I H X S+ 0 0 51 -4,-3.4 4,-1.5 1,-0.2 3,-0.5 0.833 107.5 62.8 -70.0 -34.0 2.9 0.5 -0.0 11 16 A I H X S+ 0 0 46 -4,-2.1 4,-2.5 -5,-0.3 -1,-0.2 0.882 97.6 56.5 -58.0 -41.0 -0.3 -1.0 1.1 12 17 A I H X S+ 0 0 52 -4,-1.3 4,-2.2 1,-0.2 -1,-0.3 0.835 104.9 52.9 -60.2 -34.0 -2.2 1.5 -1.0 13 18 A H H X S+ 0 0 54 -4,-0.7 4,-1.5 -3,-0.5 -1,-0.2 0.850 109.2 48.6 -69.9 -36.2 -0.3 0.3 -4.0 14 19 A I H X S+ 0 0 51 -4,-1.5 4,-1.8 2,-0.2 -2,-0.2 0.903 112.0 48.1 -70.0 -43.6 -1.3 -3.3 -3.3 15 20 A V H X S+ 0 0 54 -4,-2.5 4,-1.7 1,-0.2 -2,-0.2 0.919 109.8 52.3 -63.0 -46.0 -5.0 -2.4 -2.8 16 21 A V H X S+ 0 0 54 -4,-2.2 4,-1.2 1,-0.2 -1,-0.2 0.875 107.8 52.9 -58.0 -39.8 -5.0 -0.4 -6.0 17 22 A W H X S+ 0 0 48 -4,-1.5 4,-1.7 1,-0.2 3,-0.4 0.904 104.6 54.6 -62.8 -43.6 -3.6 -3.4 -7.9 18 23 A S H < S+ 0 0 57 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.873 104.2 55.2 -58.0 -39.4 -6.3 -5.7 -6.5 19 24 A I H < S+ 0 0 71 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.836 104.7 54.2 -63.1 -34.0 -8.9 -3.3 -8.0 20 25 A V H < 0 0 70 -4,-1.2 -1,-0.2 -3,-0.4 -2,-0.2 0.888 360.0 360.0 -67.3 -41.1 -7.2 -3.6 -11.4 21 26 A I < 0 0 107 -4,-1.7 -2,-0.2 0, 0.0 -1,-0.2 0.919 360.0 360.0 -67.6 360.0 -7.5 -7.4 -11.3