==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 19-MAR-13 4JPR . COMPND 2 MOLECULE: ASLV FUSION TM; . SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN SARCOMA LEUKOSIS VIRUS; . AUTHOR H.AYDIN,B.M.SMRKE,J.E.LEE . 76 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5803.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 81.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 50 65.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 450 A Y > 0 0 226 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 176.9 29.5 36.1 27.5 2 451 A F H > + 0 0 66 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.894 360.0 56.0 -65.2 -39.3 26.1 35.4 29.0 3 452 A Q H > S+ 0 0 125 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.867 106.6 54.2 -57.2 -33.4 27.5 32.1 30.3 4 453 A G H > S+ 0 0 34 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.979 110.7 40.8 -62.2 -59.0 30.0 34.3 32.0 5 454 A T H X S+ 0 0 94 -4,-2.2 4,-2.2 1,-0.2 -2,-0.2 0.895 117.2 50.9 -56.6 -41.5 27.6 36.5 33.8 6 455 A A H X S+ 0 0 26 -4,-2.9 4,-2.6 1,-0.2 5,-0.2 0.937 109.3 48.0 -66.0 -48.5 25.4 33.6 34.6 7 456 A N H X S+ 0 0 81 -4,-2.6 4,-2.1 -5,-0.2 -1,-0.2 0.864 111.0 52.4 -65.9 -32.7 28.3 31.5 36.1 8 457 A L H X S+ 0 0 126 -4,-2.4 4,-2.7 -5,-0.2 -1,-0.2 0.929 109.0 50.6 -65.5 -42.8 29.4 34.4 38.1 9 458 A T H X S+ 0 0 65 -4,-2.2 4,-3.1 -5,-0.2 -2,-0.2 0.932 112.5 44.5 -58.8 -48.6 25.9 34.9 39.5 10 459 A T H X S+ 0 0 5 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.915 112.7 51.7 -68.9 -35.6 25.6 31.2 40.5 11 460 A S H X S+ 0 0 65 -4,-2.1 4,-1.9 -5,-0.2 -2,-0.2 0.988 113.9 44.8 -62.1 -47.1 29.0 31.1 42.0 12 461 A L H X S+ 0 0 110 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.941 112.0 50.5 -63.6 -48.5 28.2 34.2 44.0 13 462 A L H X S+ 0 0 52 -4,-3.1 4,-2.7 1,-0.2 -1,-0.2 0.858 106.0 58.2 -57.5 -34.9 24.8 32.9 45.1 14 463 A G H X S+ 0 0 10 -4,-2.4 4,-2.0 2,-0.2 -1,-0.2 0.954 108.4 44.0 -58.0 -52.1 26.4 29.7 46.2 15 464 A D H X S+ 0 0 103 -4,-1.9 4,-2.0 1,-0.2 -2,-0.2 0.922 114.5 50.7 -60.2 -43.9 28.6 31.5 48.6 16 465 A L H X S+ 0 0 92 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.875 107.5 51.4 -65.7 -40.0 25.8 33.7 49.8 17 466 A L H X S+ 0 0 42 -4,-2.7 4,-2.3 1,-0.2 5,-0.2 0.923 110.3 50.2 -59.7 -46.6 23.4 30.8 50.5 18 467 A D H X S+ 0 0 108 -4,-2.0 4,-1.5 -5,-0.2 -2,-0.2 0.876 111.4 48.2 -61.3 -38.7 26.1 29.1 52.6 19 468 A D H X S+ 0 0 106 -4,-2.0 4,-2.1 2,-0.2 -1,-0.2 0.870 112.6 48.7 -70.3 -34.0 26.7 32.3 54.6 20 469 A V H X S+ 0 0 64 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.859 109.1 51.6 -74.8 -37.7 23.0 32.9 55.2 21 470 A T H X S+ 0 0 71 -4,-2.3 4,-1.9 2,-0.2 -1,-0.2 0.893 112.1 48.5 -57.3 -41.3 22.5 29.3 56.4 22 471 A S H X S+ 0 0 74 -4,-1.5 4,-1.9 -5,-0.2 -2,-0.2 0.881 109.5 51.7 -72.0 -39.3 25.3 29.8 58.7 23 472 A I H X S+ 0 0 102 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.948 108.9 50.7 -60.0 -49.4 23.9 33.1 60.0 24 473 A R H X S+ 0 0 44 -4,-2.4 4,-1.9 1,-0.2 -2,-0.2 0.882 107.7 52.6 -59.0 -42.7 20.5 31.5 60.7 25 474 A H H X S+ 0 0 114 -4,-1.9 4,-2.1 1,-0.2 -1,-0.2 0.919 109.7 49.3 -59.8 -42.8 22.1 28.6 62.6 26 475 A A H X S+ 0 0 38 -4,-1.9 4,-2.6 1,-0.2 -1,-0.2 0.869 108.3 53.0 -65.1 -38.0 24.0 31.1 64.8 27 476 A V H X S+ 0 0 56 -4,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.873 109.7 48.4 -67.0 -36.9 20.9 33.2 65.5 28 477 A L H X S+ 0 0 35 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.864 111.2 49.1 -73.1 -36.3 19.0 30.1 66.7 29 478 A Q H X S+ 0 0 111 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.890 110.9 52.5 -64.1 -40.2 21.9 29.0 68.9 30 479 A N H X S+ 0 0 106 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.950 109.0 49.0 -61.2 -47.7 21.9 32.6 70.3 31 480 A R H X S+ 0 0 47 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.936 109.3 52.1 -57.8 -43.9 18.1 32.3 71.0 32 481 A A H X S+ 0 0 35 -4,-2.4 4,-1.4 2,-0.2 -1,-0.2 0.882 109.8 49.8 -56.5 -40.7 18.6 29.0 72.8 33 482 A A H X S+ 0 0 50 -4,-1.9 4,-2.1 1,-0.2 -2,-0.2 0.916 108.7 52.5 -64.4 -44.6 21.3 30.6 74.9 34 483 A I H X S+ 0 0 75 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.902 106.9 52.6 -56.2 -40.1 19.0 33.5 75.7 35 484 A D H X S+ 0 0 25 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.814 105.6 53.6 -73.7 -32.4 16.2 31.1 76.9 36 485 A F H X S+ 0 0 151 -4,-1.4 4,-2.0 -3,-0.2 -1,-0.2 0.900 110.2 48.3 -64.7 -45.5 18.6 29.4 79.2 37 486 A L H X S+ 0 0 113 -4,-2.1 4,-0.7 2,-0.2 -2,-0.2 0.918 110.0 50.5 -57.5 -45.1 19.4 32.7 80.8 38 487 A L H ><>S+ 0 0 31 -4,-2.4 5,-3.0 1,-0.2 3,-1.1 0.930 108.8 54.3 -59.0 -45.1 15.7 33.7 81.1 39 488 A L H ><5S+ 0 0 116 -4,-2.2 3,-2.5 1,-0.2 -1,-0.2 0.929 103.5 54.5 -49.9 -48.9 15.2 30.4 82.7 40 489 A A H 3<5S+ 0 0 88 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.651 105.9 53.3 -70.1 -12.4 17.9 31.1 85.3 41 490 A H T <<5S- 0 0 150 -3,-1.1 -1,-0.3 -4,-0.7 -2,-0.2 0.365 125.1-104.9 -93.7 3.4 16.1 34.3 86.1 42 491 A G T < 5S+ 0 0 69 -3,-2.5 2,-0.3 1,-0.3 -3,-0.2 0.687 82.8 124.8 78.7 20.6 12.9 32.3 86.7 43 492 A H < - 0 0 98 -5,-3.0 -1,-0.3 -6,-0.2 -2,-0.2 -0.859 52.0-138.5-113.3 151.0 11.4 33.5 83.5 44 493 A G > - 0 0 18 -2,-0.3 3,-2.8 -3,-0.1 4,-0.2 -0.608 34.1-104.0-100.1 163.6 10.0 31.4 80.5 45 494 A a G > S+ 0 0 32 1,-0.3 3,-2.0 -2,-0.2 6,-0.5 0.785 116.8 72.7 -61.2 -22.6 10.5 32.2 76.9 46 495 A E G 3 S+ 0 0 136 1,-0.3 -1,-0.3 5,-0.2 3,-0.1 0.577 83.7 69.3 -64.8 -10.6 6.9 33.5 76.8 47 496 A D G < S+ 0 0 85 -3,-2.8 2,-0.4 1,-0.2 -1,-0.3 0.558 98.5 54.5 -85.7 -6.6 8.1 36.5 78.8 48 497 A V S X S- 0 0 59 -3,-2.0 3,-2.7 -4,-0.2 4,-0.3 -0.977 97.0-102.9-136.6 119.0 10.1 37.9 75.8 49 498 A A T 3 S- 0 0 98 -2,-0.4 -3,-0.1 1,-0.3 -2,-0.1 -0.134 101.6 -5.6 -36.7 113.4 8.8 38.6 72.3 50 499 A G T > S+ 0 0 42 -4,-0.1 3,-1.5 1,-0.1 -1,-0.3 0.266 93.9 120.3 88.0 -6.8 9.8 35.8 69.9 51 500 A M T < S+ 0 0 24 -3,-2.7 -5,-0.2 -6,-0.5 -16,-0.1 0.698 72.3 52.5 -77.5 -15.0 12.0 33.9 72.3 52 501 A a T 3 S+ 0 0 63 -4,-0.3 2,-0.5 -7,-0.3 -1,-0.3 0.599 90.9 96.0 -83.1 -18.1 9.9 30.6 72.2 53 502 A S < + 0 0 53 -3,-1.5 3,-0.0 1,-0.1 -22,-0.0 -0.652 31.9 158.0 -89.4 127.5 10.1 30.5 68.4 54 503 A F + 0 0 91 -2,-0.5 2,-0.8 1,-0.1 -1,-0.1 0.133 53.8 94.7-125.0 16.6 12.8 28.5 66.6 55 504 A N + 0 0 84 -27,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.840 55.2 170.4-114.1 83.5 10.9 28.1 63.3 56 505 A L - 0 0 58 -2,-0.8 2,-0.2 1,-0.2 -2,-0.1 -0.451 54.8 -67.1 -83.5 166.7 12.4 31.0 61.3 57 506 A S + 0 0 110 -2,-0.2 -1,-0.2 1,-0.1 0, 0.0 -0.423 63.0 173.0 -55.3 124.8 11.8 31.4 57.6 58 507 A D > + 0 0 86 -2,-0.2 2,-1.4 -3,-0.1 3,-0.8 -0.307 18.1 155.9-142.3 48.0 13.7 28.4 56.4 59 508 A Q T 3> + 0 0 49 1,-0.3 4,-2.2 2,-0.1 5,-0.2 0.070 35.0 125.5 -71.3 30.8 13.0 28.2 52.7 60 509 A S H 3> + 0 0 39 -2,-1.4 4,-2.4 2,-0.2 -1,-0.3 0.891 66.8 53.5 -60.5 -42.3 16.3 26.2 52.6 61 510 A E H <> S+ 0 0 83 -3,-0.8 4,-2.0 1,-0.2 3,-0.3 0.984 112.0 43.3 -51.9 -64.0 14.6 23.3 50.8 62 511 A S H > S+ 0 0 59 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.808 114.1 50.7 -54.0 -39.8 13.2 25.3 48.1 63 512 A I H X S+ 0 0 68 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.910 107.3 51.4 -72.6 -42.7 16.3 27.4 47.6 64 513 A Q H X S+ 0 0 51 -4,-2.4 4,-3.0 -3,-0.3 5,-0.2 0.934 111.4 47.2 -60.8 -47.4 18.8 24.5 47.3 65 514 A K H X S+ 0 0 67 -4,-2.0 4,-2.8 -5,-0.2 -1,-0.2 0.933 114.8 46.2 -62.8 -43.4 16.7 22.7 44.6 66 515 A K H X S+ 0 0 137 -4,-2.0 4,-1.8 2,-0.2 -1,-0.2 0.848 112.0 52.2 -64.2 -38.6 16.3 26.0 42.6 67 516 A F H X S+ 0 0 32 -4,-2.5 4,-2.3 2,-0.2 -2,-0.2 0.961 111.1 46.6 -60.8 -52.7 20.0 26.7 43.0 68 517 A Q H X S+ 0 0 88 -4,-3.0 4,-2.6 1,-0.2 5,-0.3 0.943 112.7 49.9 -52.6 -49.3 20.8 23.2 41.7 69 518 A L H X S+ 0 0 56 -4,-2.8 4,-1.3 1,-0.2 -1,-0.2 0.853 110.7 51.4 -60.8 -33.2 18.4 23.6 38.8 70 519 A M H X S+ 0 0 68 -4,-1.8 4,-2.9 2,-0.2 -1,-0.2 0.910 111.0 45.7 -71.1 -42.9 20.0 27.0 38.0 71 520 A K H X S+ 0 0 67 -4,-2.3 4,-3.5 2,-0.2 -2,-0.2 0.961 112.8 49.3 -62.8 -52.7 23.5 25.6 37.9 72 521 A E H < S+ 0 0 124 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.808 117.9 42.2 -58.4 -31.2 22.6 22.6 35.8 73 522 A H H >< S+ 0 0 160 -4,-1.3 3,-0.6 -5,-0.3 -1,-0.2 0.869 118.5 44.1 -82.4 -40.2 20.7 25.0 33.4 74 523 A V H 3< S+ 0 0 26 -4,-2.9 -2,-0.2 1,-0.2 -3,-0.2 0.868 120.9 37.2 -75.9 -35.9 23.4 27.7 33.4 75 524 A N T 3< 0 0 77 -4,-3.5 -1,-0.2 -5,-0.2 -2,-0.1 -0.081 360.0 360.0-113.8 33.2 26.5 25.5 33.1 76 525 A K < 0 0 114 -3,-0.6 -1,-0.1 -5,-0.1 0, 0.0 -0.925 360.0 360.0-145.8 360.0 25.3 22.7 30.7