==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 03-AUG-01 1JQ0 . COMPND 2 MOLECULE: GP41 ENVELOPE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN IMMUNODEFICIENCY VIRUS; . AUTHOR J.LIU,S.WANG,C.C.LABRANCHE,J.A.HOXIE,M.LU . 71 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5909.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 87.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 62 87.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A L > 0 0 158 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -19.5 29.4 41.1 54.1 2 5 A A H > + 0 0 62 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.905 360.0 49.5 -58.1 -40.4 32.8 41.1 52.5 3 6 A G H > S+ 0 0 57 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.868 110.8 49.0 -66.7 -37.5 31.8 38.2 50.3 4 7 A I H > S+ 0 0 105 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.930 112.7 47.3 -67.6 -45.4 28.6 39.9 49.3 5 8 A V H X S+ 0 0 14 -4,-2.8 4,-1.6 1,-0.2 -2,-0.2 0.892 111.9 51.1 -63.4 -38.0 30.5 43.2 48.5 6 9 A Q H X S+ 0 0 91 -4,-2.4 4,-2.1 -5,-0.2 -1,-0.2 0.887 107.6 53.2 -65.8 -37.9 33.0 41.1 46.5 7 10 A Q H X S+ 0 0 91 -4,-2.0 4,-2.3 1,-0.2 -1,-0.2 0.868 105.3 54.3 -66.4 -34.3 30.2 39.5 44.6 8 11 A Q H X S+ 0 0 88 -4,-1.8 4,-2.3 1,-0.2 -1,-0.2 0.889 107.1 51.0 -67.0 -35.8 28.9 42.9 43.7 9 12 A Q H X S+ 0 0 58 -4,-1.6 4,-2.5 2,-0.2 -2,-0.2 0.910 109.7 50.6 -64.9 -40.1 32.3 43.8 42.3 10 13 A Q H X S+ 0 0 93 -4,-2.1 4,-2.0 1,-0.2 -2,-0.2 0.896 111.6 47.0 -65.6 -38.4 32.3 40.6 40.2 11 14 A L H X S+ 0 0 91 -4,-2.3 4,-2.7 2,-0.2 5,-0.2 0.893 111.3 51.8 -69.8 -38.1 28.8 41.4 38.8 12 15 A L H X S+ 0 0 20 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.919 109.9 49.1 -63.9 -41.1 29.9 45.0 38.1 13 16 A D H X S+ 0 0 85 -4,-2.5 4,-2.5 2,-0.2 -1,-0.2 0.902 110.7 51.3 -64.8 -38.0 32.9 43.6 36.2 14 17 A L H X S+ 0 0 99 -4,-2.0 4,-2.6 2,-0.2 -2,-0.2 0.939 111.5 45.9 -64.4 -45.9 30.7 41.3 34.3 15 18 A V H X S+ 0 0 71 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.878 112.3 52.0 -66.2 -34.2 28.3 44.0 33.2 16 19 A T H X S+ 0 0 33 -4,-2.3 4,-1.8 -5,-0.2 -1,-0.2 0.938 111.6 45.8 -65.8 -45.6 31.2 46.2 32.3 17 20 A R H X S+ 0 0 114 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.882 111.4 52.6 -65.4 -38.6 32.7 43.5 30.1 18 21 A Q H X S+ 0 0 117 -4,-2.6 4,-2.7 1,-0.2 -1,-0.2 0.848 106.3 53.9 -66.3 -31.7 29.3 42.8 28.5 19 22 A Q H X S+ 0 0 9 -4,-1.8 4,-2.7 2,-0.2 -1,-0.2 0.896 106.2 52.5 -68.7 -37.0 28.9 46.5 27.7 20 23 A E H X S+ 0 0 87 -4,-1.8 4,-1.4 2,-0.2 -2,-0.2 0.918 112.1 45.5 -62.6 -41.8 32.3 46.4 25.9 21 24 A L H X S+ 0 0 110 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.905 111.4 52.5 -68.4 -39.6 31.0 43.4 23.9 22 25 A L H X S+ 0 0 90 -4,-2.7 4,-2.5 1,-0.2 5,-0.2 0.907 105.4 54.9 -61.6 -41.6 27.7 45.2 23.2 23 26 A R H X S+ 0 0 89 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.889 109.2 49.0 -58.6 -38.2 29.6 48.2 22.0 24 27 A L H X S+ 0 0 113 -4,-1.4 4,-2.4 2,-0.2 -1,-0.2 0.868 109.2 50.3 -70.7 -38.1 31.4 45.9 19.5 25 28 A T H X S+ 0 0 66 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.892 110.6 50.5 -68.7 -35.5 28.2 44.3 18.3 26 29 A V H X S+ 0 0 19 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.923 110.4 49.8 -65.6 -41.8 26.6 47.7 17.7 27 30 A W H X S+ 0 0 166 -4,-2.1 4,-2.3 -5,-0.2 -2,-0.2 0.921 110.7 50.8 -60.2 -43.2 29.7 48.7 15.8 28 31 A G H X S+ 0 0 20 -4,-2.4 4,-2.0 2,-0.2 -2,-0.2 0.908 110.7 47.4 -61.9 -43.0 29.4 45.5 13.7 29 32 A I H X S+ 0 0 67 -4,-2.3 4,-2.5 1,-0.2 -1,-0.2 0.914 111.8 50.2 -67.1 -41.6 25.8 46.1 12.9 30 33 A K H X S+ 0 0 73 -4,-2.5 4,-1.3 1,-0.2 -1,-0.2 0.891 110.6 50.6 -63.0 -38.4 26.4 49.7 11.9 31 34 A N H < S+ 0 0 90 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.872 114.0 43.6 -68.2 -35.7 29.3 48.6 9.7 32 35 A L H < S+ 0 0 148 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.844 106.6 60.3 -76.9 -34.4 27.1 46.0 7.9 33 36 A Q H < 0 0 84 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.838 360.0 360.0 -62.6 -33.3 24.1 48.3 7.6 34 37 A T < 0 0 140 -4,-1.3 -3,-0.2 -5,-0.2 -4,-0.1 0.267 360.0 360.0-141.5 360.0 26.3 50.7 5.5 35 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 36 45 A G 0 0 122 0, 0.0 3,-0.4 0, 0.0 4,-0.2 0.000 360.0 360.0 360.0-149.6 13.9 52.7 6.8 37 46 A G > + 0 0 56 1,-0.2 4,-1.5 2,-0.1 5,-0.1 0.176 360.0 100.6 -98.6 17.7 13.9 52.7 10.6 38 47 A W H > S+ 0 0 115 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.802 72.3 62.7 -71.7 -30.2 17.6 52.7 11.0 39 48 A Q H > S+ 0 0 71 -3,-0.4 4,-1.7 1,-0.2 -1,-0.2 0.941 110.7 38.9 -60.1 -47.0 17.8 56.5 11.8 40 49 A E H > S+ 0 0 97 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.828 110.5 59.9 -73.3 -30.9 15.7 56.0 14.9 41 50 A W H X S+ 0 0 76 -4,-1.5 4,-2.5 1,-0.2 -2,-0.2 0.949 107.0 48.1 -59.4 -47.3 17.5 52.7 15.7 42 51 A K H X S+ 0 0 41 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.899 108.9 52.8 -59.8 -44.5 20.8 54.7 15.9 43 52 A R H X S+ 0 0 135 -4,-1.7 4,-1.8 1,-0.2 -1,-0.2 0.905 112.3 45.2 -59.7 -40.4 19.2 57.4 18.1 44 53 A K H X S+ 0 0 139 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.900 112.4 50.1 -70.9 -42.0 18.0 54.8 20.6 45 54 A V H X S+ 0 0 19 -4,-2.5 4,-2.7 1,-0.2 5,-0.2 0.917 109.7 52.0 -63.3 -41.0 21.3 52.9 20.6 46 55 A D H X S+ 0 0 74 -4,-2.7 4,-2.2 1,-0.2 -1,-0.2 0.909 109.8 49.1 -61.6 -42.7 23.2 56.2 21.2 47 56 A F H X S+ 0 0 131 -4,-1.8 4,-2.8 -5,-0.2 5,-0.2 0.936 112.5 47.4 -62.0 -47.6 21.0 57.0 24.1 48 57 A L H X S+ 0 0 91 -4,-2.5 4,-2.9 1,-0.2 5,-0.3 0.906 110.3 51.5 -62.3 -43.0 21.4 53.6 25.7 49 58 A E H X S+ 0 0 45 -4,-2.7 4,-2.0 2,-0.2 -1,-0.2 0.927 114.3 43.9 -60.5 -44.5 25.2 53.6 25.2 50 59 A E H X S+ 0 0 87 -4,-2.2 4,-2.0 -5,-0.2 -2,-0.2 0.925 115.7 47.6 -65.6 -45.6 25.5 57.0 26.9 51 60 A N H X S+ 0 0 65 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.889 112.4 48.5 -64.0 -41.6 23.1 56.1 29.7 52 61 A I H X S+ 0 0 44 -4,-2.9 4,-2.3 2,-0.2 -1,-0.2 0.911 109.1 53.3 -66.9 -41.0 24.7 52.8 30.5 53 62 A T H X S+ 0 0 49 -4,-2.0 4,-1.7 -5,-0.3 -1,-0.2 0.917 110.4 47.8 -59.2 -42.9 28.2 54.4 30.6 54 63 A A H X S+ 0 0 38 -4,-2.0 4,-2.1 1,-0.2 -1,-0.2 0.905 111.3 50.8 -63.9 -42.8 26.9 56.9 33.1 55 64 A L H X S+ 0 0 88 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.828 106.3 54.6 -65.2 -34.6 25.3 54.1 35.2 56 65 A L H X S+ 0 0 14 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.911 108.4 49.6 -65.7 -41.0 28.5 52.1 35.2 57 66 A E H X S+ 0 0 114 -4,-1.7 4,-2.1 1,-0.2 -2,-0.2 0.929 112.0 47.7 -62.2 -44.8 30.3 55.1 36.6 58 67 A E H X S+ 0 0 115 -4,-2.1 4,-2.4 1,-0.2 -1,-0.2 0.883 110.9 51.1 -64.1 -39.2 27.7 55.5 39.3 59 68 A A H X S+ 0 0 39 -4,-2.4 4,-2.3 2,-0.2 -1,-0.2 0.882 108.4 52.3 -67.0 -35.8 27.8 51.8 40.2 60 69 A Q H X S+ 0 0 102 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.911 110.0 48.7 -65.2 -41.3 31.6 52.0 40.5 61 70 A I H X S+ 0 0 97 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.920 111.8 48.7 -63.7 -43.8 31.2 55.0 42.9 62 71 A Q H X S+ 0 0 96 -4,-2.4 4,-2.5 1,-0.2 -2,-0.2 0.888 108.7 54.4 -64.5 -36.1 28.6 53.1 44.9 63 72 A Q H X S+ 0 0 14 -4,-2.3 4,-2.4 1,-0.2 -1,-0.2 0.928 108.9 48.3 -62.0 -44.7 31.0 50.1 45.0 64 73 A E H X S+ 0 0 84 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.887 111.1 49.6 -63.3 -41.7 33.7 52.2 46.4 65 74 A K H X S+ 0 0 117 -4,-2.2 4,-2.6 2,-0.2 5,-0.2 0.916 111.9 48.8 -63.8 -43.0 31.5 53.7 49.1 66 75 A N H X S+ 0 0 42 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.904 112.3 48.3 -62.9 -40.9 30.3 50.2 50.1 67 76 A M H X S+ 0 0 58 -4,-2.4 4,-3.3 2,-0.2 5,-0.2 0.883 110.6 52.3 -67.3 -38.2 33.9 49.1 50.3 68 77 A Y H X S+ 0 0 159 -4,-2.5 4,-2.9 2,-0.2 -2,-0.2 0.956 109.9 46.5 -61.4 -52.0 34.8 52.1 52.4 69 78 A E H < S+ 0 0 145 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.862 115.3 49.1 -60.2 -33.9 32.0 51.5 54.9 70 79 A L H < S+ 0 0 60 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.952 113.9 43.7 -69.0 -50.4 33.1 47.9 55.0 71 80 A Q H < 0 0 141 -4,-3.3 -2,-0.2 1,-0.3 -1,-0.2 0.833 360.0 360.0 -64.8 -36.4 36.9 48.6 55.5 72 81 A K < 0 0 111 -4,-2.9 -1,-0.3 -5,-0.2 -4,-0.1 -0.227 360.0 360.0 -69.1 360.0 36.2 51.3 58.1